LOC100686146 (scm-like with four MBT domains protein 1) - Rat Genome Database

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Gene: LOC100686146 (scm-like with four MBT domains protein 1) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC100686146
Name: scm-like with four MBT domains protein 1
RGD ID: 12414677
Description: ENCODES a protein that exhibits chromatin binding (inferred); histone binding (inferred); INVOLVED IN negative regulation of DNA-templated transcription (inferred); regulation of DNA-templated transcription (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: scm-like with four MBT domains protein 1 pseudogene
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,567 - 49,557 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2460,951 - 62,926 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.024424,364 - 426,339 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12434,178 - 36,153 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.024127,066 - 129,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024417,009 - 418,984 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Variants

.
Variants in LOC100686146
8 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038432893   ⟹   XP_038288821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.024424,364 - 426,339 (-)NCBI
RefSeq Acc Id: XM_038457797   ⟹   XP_038313725
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2460,951 - 62,926 (-)NCBI
RefSeq Acc Id: XM_038509589   ⟹   XP_038365517
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12434,178 - 36,153 (-)NCBI
RefSeq Acc Id: XM_038572975   ⟹   XP_038428903
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.024417,009 - 418,984 (-)NCBI
RefSeq Acc Id: XM_038635600   ⟹   XP_038491528
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.024127,066 - 129,041 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038365517   ⟸   XM_038509589
RefSeq Acc Id: XP_038491528   ⟸   XM_038635600
RefSeq Acc Id: XP_038288821   ⟸   XM_038432893
RefSeq Acc Id: XP_038313725   ⟸   XM_038457797
RefSeq Acc Id: XP_038428903   ⟸   XM_038572975
Protein Domains
SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000056746 UniProtKB/TrEMBL
  ENSCAFG00040021978 UniProtKB/TrEMBL
  ENSCAFG00845026576 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000107493.1 UniProtKB/TrEMBL
  ENSCAFT00040040782.1 UniProtKB/TrEMBL
  ENSCAFT00845046826.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
  3.90.1150.190 UniProtKB/TrEMBL
InterPro Mbt UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  SLED UniProtKB/TrEMBL
  SLED_sf UniProtKB/TrEMBL
NCBI Gene LOC100686146 ENTREZGENE
PANTHER POLYCOMB GROUP PROTEIN UniProtKB/TrEMBL
  SCM-LIKE WITH FOUR MBT DOMAINS PROTEIN 1 UniProtKB/TrEMBL
Pfam MBT UniProtKB/TrEMBL
  SLED UniProtKB/TrEMBL
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A8C0Z452_CANLF UniProtKB/TrEMBL
  A0A8I3PPS2_CANLF UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC100686146  scm-like with four MBT domains protein 1  LOC100686146  scm-like with four MBT domains protein 1 pseudogene  Symbol and/or name change 5135510 APPROVED