SYNPO (synaptopodin) - Rat Genome Database

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Gene: SYNPO (synaptopodin) Canis lupus familiaris
Analyze
Symbol: SYNPO
Name: synaptopodin
RGD ID: 12410341
Description: INVOLVED IN postsynaptic modulation of chemical synaptic transmission (ortholog); regulation of long-term neuronal synaptic plasticity (ortholog); regulation of postsynaptic cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH chronic kidney disease (ortholog); familial adenomatous polyposis 1 (ortholog); focal segmental glomerulosclerosis 8 (ortholog); FOUND IN cell periphery (ortholog); glutamatergic synapse (ortholog); Schaffer collateral - CA1 synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,501,361 - 58,549,340 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,497,734 - 58,550,438 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,260,078 - 58,297,258 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0458,974,689 - 59,011,637 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl458,974,684 - 59,029,816 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,763,050 - 58,800,212 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0458,877,636 - 58,914,546 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,408,732 - 59,445,642 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:26504173   PMID:30032202  


Genomics

Comparative Map Data
SYNPO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,501,361 - 58,549,340 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,497,734 - 58,550,438 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,260,078 - 58,297,258 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0458,974,689 - 59,011,637 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl458,974,684 - 59,029,816 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,763,050 - 58,800,212 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0458,877,636 - 58,914,546 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,408,732 - 59,445,642 (-)NCBIUU_Cfam_GSD_1.0
SYNPO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385150,586,010 - 150,659,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5150,601,080 - 150,659,207 (+)EnsemblGRCh38hg38GRCh38
GRCh375149,980,638 - 150,038,769 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365150,000,433 - 150,017,145 (+)NCBINCBI36Build 36hg18NCBI36
Build 345150,000,432 - 150,017,145NCBI
Celera5146,061,703 - 146,120,135 (+)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5145,127,069 - 145,185,217 (+)NCBIHuRef
CHM1_15149,413,067 - 149,471,214 (+)NCBICHM1_1
T2T-CHM13v2.05151,122,525 - 151,195,715 (+)NCBIT2T-CHM13v2.0
Synpo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391860,727,053 - 60,793,241 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1860,727,045 - 60,793,214 (-)EnsemblGRCm39 Ensembl
GRCm381860,593,981 - 60,660,173 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1860,593,973 - 60,660,142 (-)EnsemblGRCm38mm10GRCm38
MGSCv371860,753,644 - 60,783,959 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361860,719,342 - 60,749,998 (-)NCBIMGSCv36mm8
Celera1861,877,103 - 61,907,329 (-)NCBICelera
Cytogenetic Map18D3- E1NCBI
cM Map1834.36NCBI
Synpo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81856,326,369 - 56,347,359 (-)NCBIGRCr8
mRatBN7.21854,048,299 - 54,106,388 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,026,152 - 54,102,126 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1856,144,901 - 56,165,878 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01856,859,497 - 56,880,474 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01854,679,863 - 54,700,853 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01855,863,081 - 55,921,412 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1855,865,467 - 55,916,220 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,096,559 - 55,154,838 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,552,991 - 56,573,981 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11856,625,222 - 56,627,418 (-)NCBI
Celera1852,210,523 - 52,231,513 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Synpo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554153,932,192 - 3,990,022 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554153,929,781 - 3,977,769 (-)NCBIChiLan1.0ChiLan1.0
SYNPO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24145,853,273 - 145,887,848 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15143,992,845 - 144,027,395 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05146,048,956 - 146,083,490 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15152,046,461 - 152,087,703 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5152,046,207 - 152,085,595 (+)Ensemblpanpan1.1panPan2
Synpo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213142,748,009 - 142,801,743 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365044,321,962 - 4,358,294 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365044,321,985 - 4,358,757 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNPO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,599,597 - 151,632,099 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,571,264 - 151,634,103 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SYNPO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,189,617 - 53,261,808 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2353,220,796 - 53,262,103 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603424,452,467 - 24,493,442 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Synpo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247749,902,851 - 9,910,752 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247749,860,274 - 9,912,722 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SYNPO
508 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038473938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038535034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_536465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000028748   ⟹   ENSCAFP00000026740
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl458,497,734 - 58,550,438 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000044540   ⟹   ENSCAFP00000041711
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl458,501,294 - 58,550,438 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845011510   ⟹   ENSCAFP00845008992
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl458,974,684 - 59,029,816 (-)Ensembl
RefSeq Acc Id: XM_038473938   ⟹   XP_038329866
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1458,763,050 - 58,800,212 (-)NCBI
RefSeq Acc Id: XM_038473939   ⟹   XP_038329867
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1458,763,050 - 58,793,660 (-)NCBI
RefSeq Acc Id: XM_038473940   ⟹   XP_038329868
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1458,763,050 - 58,779,413 (-)NCBI
RefSeq Acc Id: XM_038473941   ⟹   XP_038329869
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1458,763,050 - 58,779,386 (-)NCBI
RefSeq Acc Id: XM_038473942   ⟹   XP_038329870
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1458,763,050 - 58,794,186 (-)NCBI
RefSeq Acc Id: XM_038473943   ⟹   XP_038329871
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1458,763,050 - 58,794,169 (-)NCBI
RefSeq Acc Id: XM_038497545   ⟹   XP_038353473
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha458,260,078 - 58,297,258 (-)NCBI
RefSeq Acc Id: XM_038497553   ⟹   XP_038353481
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha458,260,078 - 58,290,705 (-)NCBI
RefSeq Acc Id: XM_038497562   ⟹   XP_038353490
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha458,260,078 - 58,276,447 (-)NCBI
RefSeq Acc Id: XM_038497572   ⟹   XP_038353500
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha458,260,078 - 58,276,420 (-)NCBI
RefSeq Acc Id: XM_038497579   ⟹   XP_038353507
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha458,260,078 - 58,291,233 (-)NCBI
RefSeq Acc Id: XM_038497587   ⟹   XP_038353515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha458,260,078 - 58,291,216 (-)NCBI
RefSeq Acc Id: XM_038535029   ⟹   XP_038390957
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0459,408,732 - 59,445,642 (-)NCBI
RefSeq Acc Id: XM_038535030   ⟹   XP_038390958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0459,408,732 - 59,439,088 (-)NCBI
RefSeq Acc Id: XM_038535031   ⟹   XP_038390959
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0459,408,732 - 59,425,079 (-)NCBI
RefSeq Acc Id: XM_038535032   ⟹   XP_038390960
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0459,408,732 - 59,425,052 (-)NCBI
RefSeq Acc Id: XM_038535033   ⟹   XP_038390961
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0459,408,732 - 59,439,616 (-)NCBI
RefSeq Acc Id: XM_038535034   ⟹   XP_038390962
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0459,408,732 - 59,439,599 (-)NCBI
RefSeq Acc Id: XM_038599334   ⟹   XP_038455262
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0458,877,636 - 58,914,546 (-)NCBI
RefSeq Acc Id: XM_038663638   ⟹   XP_038519566
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0458,974,689 - 59,011,637 (-)NCBI
RefSeq Acc Id: XM_038663639   ⟹   XP_038519567
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0458,974,689 - 59,005,078 (-)NCBI
RefSeq Acc Id: XM_038663640   ⟹   XP_038519568
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0458,974,689 - 58,991,058 (-)NCBI
RefSeq Acc Id: XM_038663641   ⟹   XP_038519569
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0458,974,689 - 58,991,031 (-)NCBI
RefSeq Acc Id: XM_038663642   ⟹   XP_038519570
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0458,974,689 - 59,005,605 (-)NCBI
RefSeq Acc Id: XM_038663643   ⟹   XP_038519571
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0458,974,689 - 59,005,588 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038329866 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329867 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329868 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329869 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329870 (Get FASTA)   NCBI Sequence Viewer  
  XP_038329871 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353473 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353481 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353490 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353500 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353507 (Get FASTA)   NCBI Sequence Viewer  
  XP_038353515 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390957 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390958 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390959 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390960 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390961 (Get FASTA)   NCBI Sequence Viewer  
  XP_038390962 (Get FASTA)   NCBI Sequence Viewer  
  XP_038455262 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519566 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519567 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519568 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519569 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519570 (Get FASTA)   NCBI Sequence Viewer  
  XP_038519571 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000026740.4
  ENSCAFP00030005056.1
  ENSCAFP00030005064.1
  ENSCAFP00040013978.1
  ENSCAFP00845008992
  ENSCAFP00845008992.1
Ensembl Acc Id: ENSCAFP00000026740   ⟸   ENSCAFT00000028748
Ensembl Acc Id: ENSCAFP00000041711   ⟸   ENSCAFT00000044540
RefSeq Acc Id: XP_038329866   ⟸   XM_038473938
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038329870   ⟸   XM_038473942
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329871   ⟸   XM_038473943
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329867   ⟸   XM_038473939
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329868   ⟸   XM_038473940
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038329869   ⟸   XM_038473941
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038455262   ⟸   XM_038599334
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038519566   ⟸   XM_038663638
- Peptide Label: isoform X2
- UniProtKB: A0A8I3RUS9 (UniProtKB/TrEMBL),   A0A8C0LHM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519570   ⟸   XM_038663642
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519571   ⟸   XM_038663643
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519567   ⟸   XM_038663639
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519568   ⟸   XM_038663640
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519569   ⟸   XM_038663641
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038353473   ⟸   XM_038497545
- Peptide Label: isoform X2
- UniProtKB: A0A8P0SMA2 (UniProtKB/TrEMBL),   A0A8C0LHM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038353507   ⟸   XM_038497579
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038353515   ⟸   XM_038497587
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038353481   ⟸   XM_038497553
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038353490   ⟸   XM_038497562
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038353500   ⟸   XM_038497572
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390957   ⟸   XM_038535029
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LHM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390961   ⟸   XM_038535033
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390962   ⟸   XM_038535034
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390958   ⟸   XM_038535030
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390959   ⟸   XM_038535031
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038390960   ⟸   XM_038535032
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M8Y3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845008992   ⟸   ENSCAFT00845011510

Promoters
RGD ID:13683023
Promoter ID:EPDNEW_C1091
Type:multiple initiation site
Name:SYNPO_1
Description:synaptopodin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1458,505,471 - 58,505,531EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018091 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030003032 UniProtKB/TrEMBL
  ENSCAFG00040008662 UniProtKB/TrEMBL
  ENSCAFG00845006489 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028748.4 UniProtKB/TrEMBL
  ENSCAFT00030005682.1 UniProtKB/TrEMBL
  ENSCAFT00030005691.1 UniProtKB/TrEMBL
  ENSCAFT00040016141.1 UniProtKB/TrEMBL
  ENSCAFT00845011510 ENTREZGENE
  ENSCAFT00845011510.1 UniProtKB/TrEMBL
InterPro Synaptopodin_domain UniProtKB/TrEMBL
NCBI Gene SYNPO ENTREZGENE
PANTHER PTHR24217:SF13 UniProtKB/TrEMBL
  PUTATIVE-RELATED UniProtKB/TrEMBL
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
UniProt A0A8C0LHM7 ENTREZGENE
  A0A8C0M5M8_CANLF UniProtKB/TrEMBL
  A0A8C0M8Y3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QHT8_CANLF UniProtKB/TrEMBL
  A0A8I3RUS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SMA2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47034 ENTREZGENE