IPO9 (importin 9) - Rat Genome Database

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Gene: IPO9 (importin 9) Canis lupus familiaris
Analyze
Symbol: IPO9
Name: importin 9
RGD ID: 12394634
Description: ENCODES a protein that exhibits histone binding (inferred); histone chaperone activity (inferred); nuclear import signal receptor activity (inferred); INVOLVED IN protein import into nucleus (ortholog); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nuclear envelope (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: importin-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.171,076,628 - 1,131,579 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl71,077,212 - 1,109,988 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,124,217 - 1,183,340 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.071,080,460 - 1,139,473 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,080,460 - 1,139,463 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.171,068,380 - 1,127,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,176,601 - 1,235,590 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.071,200,625 - 1,259,845 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IPO9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.171,076,628 - 1,131,579 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl71,077,212 - 1,109,988 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,124,217 - 1,183,340 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.071,080,460 - 1,139,473 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,080,460 - 1,139,463 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.171,068,380 - 1,127,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,176,601 - 1,235,590 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.071,200,625 - 1,259,845 (-)NCBIUU_Cfam_GSD_1.0
IPO9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381201,829,157 - 201,884,291 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1201,829,149 - 201,884,291 (+)EnsemblGRCh38hg38GRCh38
GRCh371201,798,285 - 201,853,419 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361200,064,911 - 200,120,045 (+)NCBINCBI36Build 36hg18NCBI36
Build 341198,529,994 - 198,576,839NCBI
Celera1174,922,106 - 174,977,247 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1172,964,184 - 173,019,336 (+)NCBIHuRef
CHM1_11203,220,529 - 203,275,666 (+)NCBICHM1_1
T2T-CHM13v2.01201,086,926 - 201,142,038 (+)NCBIT2T-CHM13v2.0
Ipo9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,310,050 - 135,358,260 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,310,050 - 135,358,237 (-)EnsemblGRCm39 Ensembl
GRCm381135,382,312 - 135,430,499 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,382,312 - 135,430,499 (-)EnsemblGRCm38mm10GRCm38
MGSCv371137,278,892 - 137,327,068 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,198,026 - 137,246,910 (-)NCBIMGSCv36mm8
Celera1138,010,453 - 138,059,620 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.6NCBI
Ipo9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,362,244 - 49,414,477 (-)NCBIGRCr8
mRatBN7.21346,810,460 - 46,862,694 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,813,171 - 46,862,673 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,421,608 - 49,470,464 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01350,709,684 - 50,758,534 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,973,651 - 48,021,979 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01352,203,384 - 52,256,196 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,207,435 - 52,256,196 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,258,618 - 57,305,942 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,382,355 - 48,433,927 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11348,396,099 - 48,459,702 (-)NCBI
Celera1347,133,940 - 47,182,232 (-)NCBICelera
Cytogenetic Map13q13NCBI
Ipo9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540637,897,864 - 37,946,991 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540637,898,415 - 37,946,991 (+)NCBIChiLan1.0ChiLan1.0
IPO9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,498,802 - 47,553,582 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,463,517 - 47,518,380 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,426,144 - 177,480,948 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11181,727,622 - 181,783,461 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1181,727,697 - 181,775,242 (+)Ensemblpanpan1.1panPan2
Ipo9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,376,535 - 73,427,275 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365672,610,294 - 2,662,038 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365672,613,358 - 2,661,928 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IPO9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1024,110,064 - 24,150,291 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11024,110,126 - 24,150,294 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,601,398 - 28,612,506 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IPO9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12527,533,114 - 27,585,273 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2527,534,042 - 27,585,336 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605528,308,852 - 28,367,259 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ipo9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248078,900,702 - 8,944,336 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248078,896,540 - 8,944,003 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IPO9
334 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 1 16 6 6 12 10 6
Low 1 4 6 6 6 6 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005622194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038606029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038606030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000016957   ⟹   ENSCAFP00000015686
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl71,077,574 - 1,109,988 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000085187   ⟹   ENSCAFP00000064155
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl71,077,212 - 1,109,988 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000092932   ⟹   ENSCAFP00000063234
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl71,077,212 - 1,109,988 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845029743   ⟹   ENSCAFP00845023361
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl71,080,460 - 1,116,934 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845030049   ⟹   ENSCAFP00845023573
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl71,080,460 - 1,116,934 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845030136   ⟹   ENSCAFP00845023638
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl71,080,466 - 1,139,463 (-)Ensembl
RefSeq Acc Id: XM_038480570   ⟹   XP_038336498
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.171,068,380 - 1,127,574 (-)NCBI
RefSeq Acc Id: XM_038480571   ⟹   XP_038336499
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.171,073,867 - 1,127,574 (-)NCBI
RefSeq Acc Id: XM_038541896   ⟹   XP_038397824
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.071,200,625 - 1,259,845 (-)NCBI
RefSeq Acc Id: XM_038541897   ⟹   XP_038397825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.071,206,113 - 1,259,845 (-)NCBI
RefSeq Acc Id: XM_038560702   ⟹   XP_038416630
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha71,124,217 - 1,183,340 (-)NCBI
RefSeq Acc Id: XM_038560703   ⟹   XP_038416631
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha71,129,706 - 1,183,340 (-)NCBI
RefSeq Acc Id: XM_038606029   ⟹   XP_038461957
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.071,176,601 - 1,235,590 (-)NCBI
RefSeq Acc Id: XM_038606030   ⟹   XP_038461958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.071,182,089 - 1,235,590 (-)NCBI
RefSeq Acc Id: XM_038670733   ⟹   XP_038526661
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.071,080,460 - 1,139,473 (-)NCBI
RefSeq Acc Id: XM_038670734   ⟹   XP_038526662
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.071,085,948 - 1,139,473 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000063234   ⟸   ENSCAFT00000092932
RefSeq Acc Id: ENSCAFP00000015686   ⟸   ENSCAFT00000016957
RefSeq Acc Id: ENSCAFP00000064155   ⟸   ENSCAFT00000085187
RefSeq Acc Id: XP_038336498   ⟸   XM_038480570
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038336499   ⟸   XM_038480571
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038461957   ⟸   XM_038606029
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038461958   ⟸   XM_038606030
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038526661   ⟸   XM_038670733
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RXA4 (UniProtKB/TrEMBL),   A0A8I3NYG3 (UniProtKB/TrEMBL),   A0A8C0KV01 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526662   ⟸   XM_038670734
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KXL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416630   ⟸   XM_038560702
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RXA4 (UniProtKB/TrEMBL),   A0A8I3NYG3 (UniProtKB/TrEMBL),   A0A8C0KV01 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416631   ⟸   XM_038560703
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KXL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397824   ⟸   XM_038541896
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KV01 (UniProtKB/TrEMBL),   A0A8C0RXA4 (UniProtKB/TrEMBL),   A0A8I3NYG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397825   ⟸   XM_038541897
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KXL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845023573   ⟸   ENSCAFT00845030049
RefSeq Acc Id: ENSCAFP00845023361   ⟸   ENSCAFT00845029743
RefSeq Acc Id: ENSCAFP00845023638   ⟸   ENSCAFT00845030136
Protein Domains
Importin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010649 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000776 UniProtKB/TrEMBL
  ENSCAFG00040003959 UniProtKB/TrEMBL
  ENSCAFG00845016777 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016957.6 UniProtKB/TrEMBL
  ENSCAFT00000085187.2 UniProtKB/TrEMBL
  ENSCAFT00030001338.1 UniProtKB/TrEMBL
  ENSCAFT00040007544.1 UniProtKB/TrEMBL
  ENSCAFT00040007570.1 UniProtKB/TrEMBL
  ENSCAFT00845029743.1 UniProtKB/TrEMBL
  ENSCAFT00845030049.1 UniProtKB/TrEMBL
  ENSCAFT00845030136 ENTREZGENE
  ENSCAFT00845030136.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
NCBI Gene IPO9 ENTREZGENE
PANTHER IMPORTIN-7, 8, 11 UniProtKB/TrEMBL
  IMPORTIN-9 UniProtKB/TrEMBL
Pfam IBN_N UniProtKB/TrEMBL
PROSITE IMPORTIN_B_NT UniProtKB/TrEMBL
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C0KV01 ENTREZGENE
  A0A8C0KXL8 ENTREZGENE
  A0A8C0Q6R0_CANLF UniProtKB/TrEMBL
  A0A8C0RXA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NXQ3_CANLF UniProtKB/TrEMBL
  A0A8I3NYG3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RZK4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:42069 ENTREZGENE