CHP2 (calcineurin like EF-hand protein 2) - Rat Genome Database

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Gene: CHP2 (calcineurin like EF-hand protein 2) Canis lupus familiaris
Analyze
Symbol: CHP2
Name: calcineurin like EF-hand protein 2
RGD ID: 12391974
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); INVOLVED IN positive regulation of phosphatase activity (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcineurin B homologous protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1622,127,422 - 22,129,637 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha623,692,416 - 23,695,700 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0622,268,938 - 22,272,231 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl622,268,470 - 22,272,191 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1622,073,288 - 22,076,560 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0621,975,160 - 21,978,449 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0622,370,651 - 22,373,928 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleolus  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)
plasma membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CHP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1622,127,422 - 22,129,637 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha623,692,416 - 23,695,700 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0622,268,938 - 22,272,231 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl622,268,470 - 22,272,191 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1622,073,288 - 22,076,560 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0621,975,160 - 21,978,449 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0622,370,651 - 22,373,928 (-)NCBIUU_Cfam_GSD_1.0
CHP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381623,755,026 - 23,758,935 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1623,755,026 - 23,758,935 (+)EnsemblGRCh38hg38GRCh38
GRCh371623,766,347 - 23,770,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361623,673,449 - 23,677,757 (+)NCBINCBI36Build 36hg18NCBI36
Celera1622,544,109 - 22,548,418 (+)NCBICelera
Cytogenetic Map16p12.2NCBI
HuRef1621,855,543 - 21,859,868 (+)NCBIHuRef
CHM1_11624,776,237 - 24,780,562 (+)NCBICHM1_1
T2T-CHM13v2.01624,028,856 - 24,032,766 (+)NCBIT2T-CHM13v2.0
Chp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397121,807,839 - 121,823,094 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7121,818,719 - 121,822,047 (+)EnsemblGRCm39 Ensembl
GRCm387122,208,621 - 122,222,539 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7122,219,496 - 122,222,824 (+)EnsemblGRCm38mm10GRCm38
MGSCv377129,363,010 - 129,366,053 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367122,010,628 - 122,014,157 (+)NCBIMGSCv36mm8
Celera7122,109,863 - 122,112,971 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map765.62NCBI
Chp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81186,189,090 - 186,203,663 (+)NCBIGRCr8
mRatBN7.21176,757,945 - 176,772,443 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1176,757,876 - 176,772,139 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1185,096,765 - 185,099,920 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01192,282,733 - 192,285,888 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,966,885 - 184,970,046 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01192,169,634 - 192,173,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1192,169,841 - 192,173,253 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01199,230,968 - 199,234,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41181,055,296 - 181,058,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11181,195,210 - 181,198,123 (+)NCBI
Celera1174,477,349 - 174,480,508 (+)NCBICelera
Cytogenetic Map1q36NCBI
Chp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554932,275,892 - 2,281,178 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554932,278,494 - 2,281,125 (+)NCBIChiLan1.0ChiLan1.0
CHP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21825,163,763 - 25,169,054 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11629,683,249 - 29,688,520 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01614,354,139 - 14,358,463 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11624,002,908 - 24,007,232 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1624,002,908 - 24,007,232 (+)Ensemblpanpan1.1panPan2
Chp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344120,276,462 - 120,279,355 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365018,374,323 - 8,377,155 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365018,374,323 - 8,377,195 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl322,473,247 - 22,478,588 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1322,473,241 - 22,478,697 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CHP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1521,471,384 - 21,476,454 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl521,472,349 - 21,476,611 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660688,320,103 - 8,324,406 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247828,873,085 - 8,876,346 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247828,873,003 - 8,881,370 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CHP2
35 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845002380   ⟹   ENSCAFP00845001891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl622,268,470 - 22,272,191 (-)Ensembl
RefSeq Acc Id: XM_038480409   ⟹   XP_038336337
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1622,073,288 - 22,076,560 (-)NCBI
RefSeq Acc Id: XM_038533762   ⟹   XP_038389690
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha623,692,416 - 23,695,700 (-)NCBI
RefSeq Acc Id: XM_038538869   ⟹   XP_038394797
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0622,370,651 - 22,373,928 (-)NCBI
RefSeq Acc Id: XM_038602995   ⟹   XP_038458923
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0621,975,160 - 21,978,449 (-)NCBI
RefSeq Acc Id: XM_038667701   ⟹   XP_038523629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0622,268,938 - 22,272,231 (-)NCBI
RefSeq Acc Id: XP_038336337   ⟸   XM_038480409
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038458923   ⟸   XM_038602995
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038523629   ⟸   XM_038667701
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038389690   ⟸   XM_038533762
- Peptide Label: isoform X5
- UniProtKB: A0A8C0NXL5 (UniProtKB/TrEMBL),   A0A8C0R585 (UniProtKB/TrEMBL),   A0A8I3ME63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394797   ⟸   XM_038538869
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NXL5 (UniProtKB/TrEMBL),   A0A8C0R585 (UniProtKB/TrEMBL),   A0A8I3ME63 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845001891   ⟸   ENSCAFT00845002380
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000052925 UniProtKB/TrEMBL
  ENSCAFG00030021122 UniProtKB/TrEMBL
  ENSCAFG00040003161 UniProtKB/TrEMBL
  ENSCAFG00845001380 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000095207.1 UniProtKB/TrEMBL
  ENSCAFT00000106292.1 UniProtKB/TrEMBL
  ENSCAFT00030038785.1 UniProtKB/TrEMBL
  ENSCAFT00030038849.1 UniProtKB/TrEMBL
  ENSCAFT00040005986.1 UniProtKB/TrEMBL
  ENSCAFT00040005996.1 UniProtKB/TrEMBL
  ENSCAFT00845002380 ENTREZGENE
  ENSCAFT00845002380.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro Calcineurin_B_homologous UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
NCBI Gene CHP2 ENTREZGENE
PANTHER CALCINEURIN B HOMOLOGOUS PROTEIN 2 UniProtKB/TrEMBL
  EG:114D9.1 PROTEIN-RELATED UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0NXL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PWD2_CANLF UniProtKB/TrEMBL
  A0A8C0R585 ENTREZGENE
  A0A8C0RQ77_CANLF UniProtKB/TrEMBL
  A0A8I3ME63 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0PNB4 UniProtKB/TrEMBL
VGNC ID VGNC:54012 ENTREZGENE