CSRP3 (cysteine and glycine rich protein 3) - Rat Genome Database

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Gene: CSRP3 (cysteine and glycine rich protein 3) Canis lupus familiaris
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Symbol: CSRP3
Name: cysteine and glycine rich protein 3
RGD ID: 12381547
Description: ENCODES a protein that exhibits MRF binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN blood vessel remodeling (ortholog); cardiac muscle tissue development (ortholog); glucose homeostasis (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); cardiomyopathy (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cysteine and glycine-rich protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12141,300,277 - 41,318,788 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2141,300,425 - 41,318,738 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2140,778,804 - 40,797,354 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02142,423,567 - 42,442,117 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2142,423,567 - 42,442,039 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12141,425,878 - 41,444,425 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02141,603,282 - 41,621,845 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02141,980,467 - 41,999,019 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)
Z disc  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CSRP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12141,300,277 - 41,318,788 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2141,300,425 - 41,318,738 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2140,778,804 - 40,797,354 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02142,423,567 - 42,442,117 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2142,423,567 - 42,442,039 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12141,425,878 - 41,444,425 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02141,603,282 - 41,621,845 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02141,980,467 - 41,999,019 (-)NCBIUU_Cfam_GSD_1.0
CSRP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381119,182,030 - 19,201,983 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1119,182,030 - 19,210,571 (-)EnsemblGRCh38hg38GRCh38
GRCh371119,203,577 - 19,223,530 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361119,160,154 - 19,180,177 (-)NCBINCBI36Build 36hg18NCBI36
Build 341119,160,153 - 19,180,177NCBI
Celera1119,336,055 - 19,356,021 (-)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1118,887,548 - 18,916,047 (-)NCBIHuRef
CHM1_11119,202,919 - 19,231,414 (-)NCBICHM1_1
T2T-CHM13v2.01119,302,167 - 19,322,081 (-)NCBIT2T-CHM13v2.0
Csrp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39748,480,146 - 48,497,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl748,480,146 - 48,497,781 (-)EnsemblGRCm39 Ensembl
GRCm38748,830,398 - 48,848,051 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl748,830,398 - 48,848,033 (-)EnsemblGRCm38mm10GRCm38
MGSCv37756,085,768 - 56,099,021 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36748,698,419 - 48,711,672 (-)NCBIMGSCv36mm8
Celera744,274,422 - 44,287,671 (-)NCBICelera
Cytogenetic Map7B4NCBI
cM Map731.11NCBI
Csrp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81107,664,338 - 107,682,916 (-)NCBIGRCr8
mRatBN7.2198,528,067 - 98,546,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl198,528,068 - 98,546,653 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1103,881,687 - 103,900,350 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01112,353,629 - 112,372,274 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01105,676,355 - 105,694,925 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01104,147,205 - 104,166,389 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1104,147,206 - 104,166,367 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01105,206,459 - 105,225,635 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4198,601,681 - 98,611,747 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1198,679,791 - 98,689,858 (-)NCBI
Celera192,735,902 - 92,745,962 (-)NCBICelera
Cytogenetic Map1q22NCBI
Csrp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955476154,917 - 176,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955476155,913 - 176,122 (-)NCBIChiLan1.0ChiLan1.0
CSRP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2921,487,369 - 21,507,272 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11121,447,665 - 21,467,550 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01119,208,025 - 19,228,000 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11119,121,234 - 19,149,374 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1119,121,234 - 19,140,820 (-)Ensemblpanpan1.1panPan2
Csrp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494743,636,738 - 43,655,378 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936654271,067 - 289,823 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936654271,067 - 313,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSRP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl240,215,353 - 40,240,616 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1240,219,288 - 40,240,614 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2243,258,339 - 43,279,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSRP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1145,792,106 - 45,813,715 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl145,803,243 - 45,813,800 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038143,137,913 - 143,148,273 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csrp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476610,611,804 - 10,631,490 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476610,611,798 - 10,631,567 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CSRP3
329 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 21 15 5 6 5 6 32 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000014992   ⟹   ENSCAFP00000013877
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2141,300,425 - 41,318,738 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845033230   ⟹   ENSCAFP00845026015
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2142,423,567 - 42,442,039 (-)Ensembl
RefSeq Acc Id: XM_038430686   ⟹   XP_038286614
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02142,423,567 - 42,442,117 (-)NCBI
RefSeq Acc Id: XM_038506019   ⟹   XP_038361947
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12141,425,878 - 41,444,425 (-)NCBI
RefSeq Acc Id: XM_038569241   ⟹   XP_038425169
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02141,980,467 - 41,999,019 (-)NCBI
RefSeq Acc Id: XM_038633432   ⟹   XP_038489360
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02141,603,282 - 41,621,845 (-)NCBI
RefSeq Acc Id: XM_847235   ⟹   XP_852328
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12141,300,277 - 41,318,788 (-)NCBI
Dog10K_Boxer_Tasha2140,778,804 - 40,797,354 (-)NCBI
Sequence:
RefSeq Acc Id: XP_852328   ⟸   XM_847235
- UniProtKB: A0A8C0L2U6 (UniProtKB/TrEMBL),   A0A8C0P4K8 (UniProtKB/TrEMBL),   A0A8I3NXE1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000013877   ⟸   ENSCAFT00000014992
RefSeq Acc Id: XP_038361947   ⟸   XM_038506019
RefSeq Acc Id: XP_038489360   ⟸   XM_038633432
RefSeq Acc Id: XP_038286614   ⟸   XM_038430686
- UniProtKB: A0A8C0L2U6 (UniProtKB/TrEMBL),   A0A8C0P4K8 (UniProtKB/TrEMBL),   A0A8I3NXE1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425169   ⟸   XM_038569241
- UniProtKB: A0A8C0L2U6 (UniProtKB/TrEMBL),   A0A8C0P4K8 (UniProtKB/TrEMBL),   A0A8I3NXE1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845026015   ⟸   ENSCAFT00845033230
Protein Domains
LIM zinc-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009424 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022189 UniProtKB/TrEMBL
  ENSCAFG00040024361 UniProtKB/TrEMBL
  ENSCAFG00845018814 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000014992.5 UniProtKB/TrEMBL
  ENSCAFT00030040751.1 UniProtKB/TrEMBL
  ENSCAFT00040045374.1 UniProtKB/TrEMBL
  ENSCAFT00845033230 ENTREZGENE
  ENSCAFT00845033230.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro Znf_LIM UniProtKB/TrEMBL
KEGG Report cfa:610946 UniProtKB/TrEMBL
NCBI Gene CSRP3 ENTREZGENE
PANTHER CYSTEINE AND GLYCINE-RICH PROTEIN 3 UniProtKB/TrEMBL
  RHO-GTPASE-ACTIVATING PROTEIN LRG1 UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A8C0L2U6 ENTREZGENE
  A0A8C0P4K8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NXE1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:39676 ENTREZGENE