CDRT4 (CMT1A duplicated region transcript 4) - Rat Genome Database

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Gene: CDRT4 (CMT1A duplicated region transcript 4) Canis lupus familiaris
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Symbol: CDRT4
Name: CMT1A duplicated region transcript 4
RGD ID: 12367381
Description: ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Charcot-Marie-Tooth disease type 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1538,983,194 - 39,015,364 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl538,983,243 - 39,022,283 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,127,920 - 39,160,096 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,091,407 - 39,123,385 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1539,064,198 - 39,096,376 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,009,773 - 39,041,744 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,197,824 - 39,229,990 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
CDRT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1538,983,194 - 39,015,364 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl538,983,243 - 39,022,283 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,127,920 - 39,160,096 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,091,407 - 39,123,385 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1539,064,198 - 39,096,376 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,009,773 - 39,041,744 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,197,824 - 39,229,990 (-)NCBIUU_Cfam_GSD_1.0
CDRT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381715,436,015 - 15,467,621 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1715,436,015 - 15,475,728 (-)EnsemblGRCh38hg38GRCh38
GRCh371715,339,332 - 15,370,935 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,280,063 - 15,311,650 (-)NCBINCBI36Build 36hg18NCBI36
Celera1715,363,875 - 15,395,464 (-)NCBICelera
Cytogenetic Map17p12NCBI
HuRef1715,232,750 - 15,264,347 (-)NCBIHuRef
CHM1_11715,348,150 - 15,379,751 (-)NCBICHM1_1
T2T-CHM13v2.01715,342,066 - 15,373,671 (-)NCBIT2T-CHM13v2.0
Cdrt4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,842,019 - 62,883,921 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,842,019 - 62,883,921 (+)EnsemblGRCm39 Ensembl
GRCm381162,951,193 - 62,993,095 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,951,193 - 62,993,095 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,764,695 - 62,806,597 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,767,388 - 62,809,290 (+)NCBIMGSCv36mm8
Celera1169,884,665 - 69,921,808 (+)NCBICelera
Cytogenetic Map11B2- B3NCBI
cM Map1138.84NCBI
Cdrt4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81048,124,695 - 48,156,717 (+)NCBIGRCr8
mRatBN7.21047,625,470 - 47,657,493 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,625,470 - 47,657,493 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1052,328,139 - 52,360,163 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,818,670 - 51,850,689 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01047,322,095 - 47,354,119 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01049,368,183 - 49,400,284 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1049,368,314 - 49,400,193 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01049,146,582 - 49,178,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41049,164,392 - 49,166,416 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1046,868,245 - 46,900,098 (+)NCBICelera
Cytogenetic Map10q23NCBI
Cdrt4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554672,228,031 - 2,267,814 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554672,228,017 - 2,267,693 (+)NCBIChiLan1.0ChiLan1.0
CDRT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21958,190,693 - 58,317,222 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11762,997,386 - 63,130,967 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01736,092,239 - 36,218,700 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11740,801,122 - 40,868,224 (+)NCBIpanpan1.1PanPan1.1panPan2
Cdrt4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560257,964,847 - 58,007,421 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367241,943,391 - 1,965,105 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDRT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11258,816,336 - 58,881,611 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21261,907,846 - 61,971,025 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDRT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11614,730,673 - 14,763,609 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1614,730,763 - 14,746,717 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660596,485,952 - 6,488,385 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdrt4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248773,507,944 - 3,541,194 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDRT4
418 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 18 16 11 2 6 2 6 28 21 7 13 9

Sequence


Ensembl Acc Id: ENSCAFT00000028449   ⟹   ENSCAFP00000026459
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl538,983,243 - 39,015,324 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000044484   ⟹   ENSCAFP00000037388
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl538,983,302 - 39,022,283 (-)Ensembl
RefSeq Acc Id: XM_005620069   ⟹   XP_005620126
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1538,983,194 - 39,015,364 (-)NCBI
Dog10K_Boxer_Tasha539,127,920 - 39,160,096 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038475769   ⟹   XP_038331697
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1539,064,198 - 39,096,376 (-)NCBI
RefSeq Acc Id: XM_038475770   ⟹   XP_038331698
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1539,064,198 - 39,096,376 (-)NCBI
RefSeq Acc Id: XM_038536952   ⟹   XP_038392880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0539,197,824 - 39,229,990 (-)NCBI
RefSeq Acc Id: XM_038536953   ⟹   XP_038392881
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0539,197,824 - 39,229,990 (-)NCBI
RefSeq Acc Id: XM_038601095   ⟹   XP_038457023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0539,009,773 - 39,041,744 (-)NCBI
RefSeq Acc Id: XM_038601096   ⟹   XP_038457024
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0539,009,788 - 39,041,744 (-)NCBI
RefSeq Acc Id: XM_038665666   ⟹   XP_038521594
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0539,091,407 - 39,123,385 (-)NCBI
RefSeq Acc Id: XM_038665667   ⟹   XP_038521595
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0539,091,422 - 39,123,385 (-)NCBI
RefSeq Acc Id: XM_845981   ⟹   XP_851074
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1538,983,194 - 39,015,364 (-)NCBI
Dog10K_Boxer_Tasha539,127,920 - 39,160,096 (-)NCBI
Sequence:
RefSeq Acc Id: XP_851074   ⟸   XM_845981
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PU02 (UniProtKB/TrEMBL),   A0A8P0SLZ7 (UniProtKB/TrEMBL),   A0A8C0M671 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005620126   ⟸   XM_005620069
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PU02 (UniProtKB/TrEMBL),   A0A8P0SLZ7 (UniProtKB/TrEMBL),   A0A8C0M671 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000026459   ⟸   ENSCAFT00000028449
Ensembl Acc Id: ENSCAFP00000037388   ⟸   ENSCAFT00000044484
RefSeq Acc Id: XP_038331697   ⟸   XM_038475769
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038331698   ⟸   XM_038475770
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038457023   ⟸   XM_038601095
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038457024   ⟸   XM_038601096
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038521594   ⟸   XM_038665666
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MRH2 (UniProtKB/TrEMBL),   A0A8C0M671 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038521595   ⟸   XM_038665667
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MRH2 (UniProtKB/TrEMBL),   A0A8C0M671 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038392880   ⟸   XM_038536952
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M671 (UniProtKB/TrEMBL),   A0A8C0PU02 (UniProtKB/TrEMBL),   A0A8P0SLZ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038392881   ⟸   XM_038536953
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M671 (UniProtKB/TrEMBL),   A0A8C0PU02 (UniProtKB/TrEMBL),   A0A8P0SLZ7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017926 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030003324 UniProtKB/TrEMBL
  ENSCAFG00040000313 UniProtKB/TrEMBL
  ENSCAFG00845004185 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028449.5 UniProtKB/TrEMBL
  ENSCAFT00000044484.4 UniProtKB/TrEMBL
  ENSCAFT00030006187.1 UniProtKB/TrEMBL
  ENSCAFT00040000512.1 UniProtKB/TrEMBL
  ENSCAFT00845007502.1 UniProtKB/TrEMBL
  ENSCAFT00845007507 ENTREZGENE
  ENSCAFT00845007507.1 UniProtKB/TrEMBL
InterPro CDRT4 UniProtKB/TrEMBL
KEGG Report cfa:608845 UniProtKB/TrEMBL
NCBI Gene CDRT4 ENTREZGENE
PANTHER CMT1A DUPLICATED REGION TRANSCRIPT 4 PROTEIN UniProtKB/TrEMBL
  PTHR37885 UniProtKB/TrEMBL
Pfam CDRT4 UniProtKB/TrEMBL
UniProt A0A8C0M671 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PU02 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MRH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MWV2_CANLF UniProtKB/TrEMBL
  A0A8P0SLZ7 ENTREZGENE
  A0A8P0SS53_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0SLZ7 UniProtKB/TrEMBL
VGNC ID VGNC:56008 ENTREZGENE