Cdrt4 (CMT1A duplicated region transcript 4) - Rat Genome Database
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Gene: Cdrt4 (CMT1A duplicated region transcript 4) Mus musculus
Analyze
Symbol: Cdrt4
Name: CMT1A duplicated region transcript 4
RGD ID: 1624007
MGI Page MGI
Description: Orthologous to human CDRT4 (CMT1A duplicated region transcript 4); INTERACTS WITH potassium dichromate; valproic acid; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 1700019I23Rik; CMT1A duplicated region transcript 4 protein homolog; RP23-172P19.2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,842,019 - 62,883,921 (+)NCBIGRCm39mm39
GRCm39 Ensembl1162,842,019 - 62,883,921 (+)Ensembl
GRCm381162,951,193 - 62,993,095 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,951,193 - 62,993,095 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,764,695 - 62,806,597 (+)NCBIGRCm37mm9NCBIm37
MGSCv361162,767,388 - 62,809,290 (+)NCBImm8
Celera1169,884,665 - 69,921,808 (+)NCBICelera
Cytogenetic Map11B2- B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Cdrt4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,842,019 - 62,883,921 (+)NCBIGRCm39mm39
GRCm39 Ensembl1162,842,019 - 62,883,921 (+)Ensembl
GRCm381162,951,193 - 62,993,095 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,951,193 - 62,993,095 (+)EnsemblGRCm38mm10GRCm38
MGSCv371162,764,695 - 62,806,597 (+)NCBIGRCm37mm9NCBIm37
MGSCv361162,767,388 - 62,809,290 (+)NCBImm8
Celera1169,884,665 - 69,921,808 (+)NCBICelera
Cytogenetic Map11B2- B3NCBI
CDRT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1715,436,015 - 15,503,608 (-)EnsemblGRCh38hg38GRCh38
GRCh381715,436,015 - 15,467,621 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371715,339,332 - 15,370,935 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,280,063 - 15,311,650 (-)NCBINCBI36hg18NCBI36
Celera1715,363,875 - 15,395,464 (-)NCBI
Cytogenetic Map17p12NCBI
HuRef1715,232,750 - 15,264,347 (-)NCBIHuRef
CHM1_11715,348,150 - 15,379,751 (-)NCBICHM1_1
Cdrt4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21047,625,448 - 47,657,493 (+)NCBI
Rnor_6.0 Ensembl1049,368,314 - 49,400,193 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01049,368,183 - 49,400,284 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01049,146,582 - 49,178,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41049,164,392 - 49,166,416 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1046,868,245 - 46,900,098 (+)NCBICelera
Cytogenetic Map10q23NCBI
Cdrt4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554672,228,031 - 2,267,814 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554672,228,017 - 2,267,693 (+)NCBIChiLan1.0ChiLan1.0
CDRT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11740,801,122 - 40,868,224 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01736,092,239 - 36,218,700 (+)NCBIMhudiblu_PPA_v0panPan3
CDRT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl538,983,243 - 39,022,283 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1538,983,194 - 39,015,364 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cdrt4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367241,943,391 - 1,965,105 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDRT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11258,816,336 - 58,881,611 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21261,907,846 - 61,971,025 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDRT4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11614,730,673 - 14,763,609 (-)NCBI
ChlSab1.1 Ensembl1614,730,763 - 14,746,717 (-)Ensembl
Cdrt4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248773,507,944 - 3,541,194 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5417484463428696Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115417484467187585Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115419011565213015Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:113
Interacting mature miRNAs:114
Transcripts:ENSMUST00000035854
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000035854   ⟹   ENSMUSP00000048844
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1162,951,193 - 62,993,095 (+)Ensembl
RefSeq Acc Id: NM_025496   ⟹   NP_079772
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,842,019 - 62,883,921 (+)NCBI
GRCm381162,951,193 - 62,993,095 (+)ENTREZGENE
MGSCv371162,764,695 - 62,806,597 (+)RGD
Celera1169,884,665 - 69,921,808 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_079772 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH48461 (Get FASTA)   NCBI Sequence Viewer  
  BAB24420 (Get FASTA)   NCBI Sequence Viewer  
  BAB24537 (Get FASTA)   NCBI Sequence Viewer  
  EDL10377 (Get FASTA)   NCBI Sequence Viewer  
  Q9DA64 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_079772   ⟸   NM_025496
- UniProtKB: Q9DA64 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000048844   ⟸   ENSMUST00000035854

Promoters
RGD ID:8675014
Promoter ID:EPDNEW_M15538
Type:initiation region
Name:Cdrt4_1
Description:Mus musculus CMT1A duplicated region transcript 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,951,215 - 62,951,275EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913588 AgrOrtholog
Ensembl Genes ENSMUSG00000042200 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000048844 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000035854 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro CDRT4 UniProtKB/Swiss-Prot
KEGG Report mmu:66338 UniProtKB/Swiss-Prot
MGD MGI:1913588 ENTREZGENE
NCBI Gene 66338 ENTREZGENE
PANTHER PTHR37885 UniProtKB/Swiss-Prot
Pfam CDRT4 UniProtKB/Swiss-Prot
PhenoGen Cdrt4 PhenoGen
UniProt CDRT4_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9D9Y3 UniProtKB/Swiss-Prot