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Gene: PCARE (photoreceptor cilium actin regulator) Canis lupus familiaris

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Symbol:

PCARE

Name:

photoreceptor cilium actin regulator

RGD ID:

12351230

Description:

INVOLVED IN photoreceptor cell outer segment organization (ortholog); protein localization to photoreceptor outer segment (ortholog); ASSOCIATED WITH retinitis pigmentosa 54; cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); FOUND IN cilium (inferred); cone photoreceptor outer segment (inferred); photoreceptor inner segment (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

C17H2orf71; chromosome 17 C2orf71 homolog; chromosome 17 open reading frame, human C2orf71; uncharacterized protein C2orf71 homolog; uncharacterized protein C2orf71-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	22,898,998 - 22,910,639 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	22,898,998 - 22,910,639 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	22,693,218 - 22,704,868 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	23,461,566 - 23,473,219 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	23,461,566 - 23,473,219 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	22,760,906 - 22,772,557 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	22,813,432 - 22,825,070 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	22,929,554 - 22,941,209 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cone-rod dystrophy (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Neuroblastoma 3 (ISO)

optic atrophy (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 54 (IAGP,ISO)

Stargardt disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

photoreceptor cell outer segment organization (IBA,IEA,ISO)

protein localization to photoreceptor outer segment (IBA,IEA,ISO)

Cellular Component

cilium (IEA)

cone photoreceptor outer segment (IEA)

photoreceptor inner segment (IBA,IEA)

photoreceptor outer segment (IBA)

References

Additional References at PubMed

PMID:22686255	PMID:30032202

Genomics

Comparative Map Data

PCARE
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	22,898,998 - 22,910,639 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	22,898,998 - 22,910,639 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	22,693,218 - 22,704,868 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	23,461,566 - 23,473,219 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	23,461,566 - 23,473,219 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	22,760,906 - 22,772,557 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	22,813,432 - 22,825,070 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	22,929,554 - 22,941,209 (-)	NCBI		UU_Cfam_GSD_1.0

PCARE
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	29,061,695 - 29,074,523 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	29,060,976 - 29,074,523 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	29,284,561 - 29,297,389 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	29,138,062 - 29,150,631 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	29,128,955 - 29,141,525 (-)	NCBI		Celera
Cytogenetic Map	2	p23.2	NCBI
HuRef	2	29,025,584 - 29,038,159 (-)	NCBI		HuRef
CHM1_1	2	29,215,022 - 29,227,597 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	29,105,151 - 29,117,982 (-)	NCBI		T2T-CHM13v2.0

Pcare
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	72,050,919 - 72,059,904 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	72,050,550 - 72,059,889 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	71,743,555 - 71,752,905 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	71,743,555 - 71,752,894 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	72,092,895 - 72,102,225 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	71,648,412 - 71,657,742 (-)	NCBI		MGSCv36	mm8
Celera	17	76,019,873 - 76,029,225 (-)	NCBI		Celera
Cytogenetic Map	17	E1.3	NCBI
cM Map	17	42.67	NCBI

Pcare
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	29,469,232 - 29,478,541 (+)	NCBI		GRCr8
mRatBN7.2	6	23,749,700 - 23,758,424 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	23,749,757 - 23,758,169 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	24,049,302 - 24,058,026 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	24,365,179 - 24,373,903 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	23,853,252 - 23,861,982 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	23,337,507 - 23,346,232 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	23,337,571 - 23,346,173 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	33,203,823 - 33,212,656 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	23,852,967 - 23,860,878 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	23,856,228 - 23,863,831 (+)	NCBI
Celera	6	23,249,047 - 23,257,772 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

Pcare
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	10,921,124 - 10,928,862 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	10,919,776 - 10,930,392 (-)	NCBI	ChiLan1.0	ChiLan1.0

PCARE
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	97,431,339 - 97,444,489 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	97,435,312 - 97,448,462 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	29,069,651 - 29,082,796 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	29,147,730 - 29,160,296 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	29,147,730 - 29,160,296 (-)	Ensembl	panpan1.1		panPan2

Pcare
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	67,060,502 - 67,070,836 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	3,768,688 - 3,777,634 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	3,768,032 - 3,781,511 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCARE
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	110,209,535 - 110,218,348 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	110,209,100 - 110,220,608 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	117,036,680 - 117,045,698 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCARE
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	78,528,526 - 78,540,067 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	33,592,022 - 33,602,906 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pcare
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	10,953,896 - 10,962,103 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	10,948,502 - 10,962,353 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PCARE
169 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	13	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001284459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JN390834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000036452 ⟹ ENSCAFP00000031832

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	17	22,898,998 - 22,910,639 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000071574 ⟹ ENSCAFP00000049531

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	17	22,901,382 - 22,910,639 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845019886 ⟹ ENSCAFP00845015576

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	17	23,461,566 - 23,473,219 (-)	Ensembl

RefSeq Acc Id:

NM_001284459 ⟹ NP_001271388

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	17	22,898,998 - 22,910,639 (-)	NCBI
Dog10K_Boxer_Tasha	17	22,693,218 - 22,704,868 (-)	NCBI
ROS_Cfam_1.0	17	23,461,566 - 23,473,219 (-)	NCBI
UMICH_Zoey_3.1	17	22,760,906 - 22,772,557 (-)	NCBI
UNSW_CanFamBas_1.0	17	22,813,432 - 22,825,070 (-)	NCBI
UU_Cfam_GSD_1.0	17	22,929,554 - 22,941,209 (-)	NCBI

Sequence:

show sequence

CTGGACCAACTAGTAAGGCTGCCTTTTGTTCCTATTTCAAGGATGATTCTTTGAAAATTGCAAA
GAGTGTGGGTGGGTGGGAGATGACTGCAGGCTGAAGTCATGGGGTGTACACCTTCCCACAATGA
CATTGTTAATAGTGTTGCTAAGAGTGGCATCCAGTTTTTTAAAAAGCCCAAGGCAATTTTGCCA
GGACGTCAGGGGGGCAGTGAAAGATGCTCTATCCCTTTGCTGGTTCCAAGCTCCACCTGCTATG
ATTCTGGGGGAGGCTCCTCCCAGGCACAGAGGCTGGCAGAGGAGCAGCCAAAGGCCAGGTGGAC
CCAAAGCCCAAATGAAGGTCTCTATCAGCTCACAAGAGATCCCAAAGGGAAAGATATGGAAGGA
CTGCCCCCAGAAACCAAAACGTCCCGATCCCAGCTGGATGAATCACAAAGCCACATGGCTAAGG
ACCTTCCATCCAAGACACAGAGTTCTCATGGGTTCCAAGGGGCAGCCTTTTCTGGGGAAGAGAG
TGAAGAAAGTACTACCCAGCAAAGAAAGCTGAGATGCCACACATGTGGCCAACAGGGCCATTTC
TGCCAAACCATCCTTCCTGCTCACGAGCCTAAAGGCAAAGTGGATTTCCCTGAGCCCCTGGTGA
AGGCCCACCAGCACGCCTACACCTACCTACACTCCTGCCTCTCCAAATATGAAGCAATTCTGTG
CATCATTCATCAGGCCACCCAGACCCAAGAGCTGCTGCAGCCCATGGTCACCTTCCTGCTGCTA
TGCGTTGATGAGGTCAACCGGCTCTTGGGGGAGATCTCCAAGGATGGAGAAATGCTTCTCAAGG
AAGTTAAGGGGGATCTGTCTTGGCCGTTGGGGAAAGGAGAGCCCCACGAGCAGCCAGATCTCCT
GCAACAGCTTCTGCAGTACACAGTCAGCAAGCTGCTGGTGCTCAGTGGCACGGTGGCCTCGATC
ACGGGCAGCTTCCTGGAGGGCTCCGGCAATTACCTCCACGCTACCGCCTGCCACTTGGGAAATA
AGCTGAGTACAAAGAGGGGTGTGGATGAATGCCTCCTAAGGGCTCTGGGGCAACTGGAAAGCTT
GGCGAGCGGCCACGGAGACCCTGGGATGCAGGACAGACCCTTGTGCTCTGAGGACAGTGGCATC
GGTGCTGACAACGAGTCTGTGCATCTGGTGGACAAGCTGGGCAAGCAAACCAGCTGGGACTCAG
CATCAGAGCCTGCAGAATGGATGCCAGTGCTTTCATCCACAGGGGAAGCCAAGCTGTCAGGACA
TAGCTGGCAGCAAGGTCCTTTCCGGATGGGTTCCGACAGACCCCAGGACTGCCCACTCTCCAGG
CCTCCGACGGCAAAGGTTCAGCCAACAGCATGGGGTGGAGCAGGTGGCCCATGGCCCTCTAGCA
CAGGCCCAGAAAATACTACTGCCAGGCCTGGAGGGATCAGCAAAAGTGCTCTGTGTGATTCCCT
TGGGATTGGGATCTCGACAGAAGCACATTTTTCTAAAGGCTCCAGGTTGATGGACACCCCTTCC
CTCAGTGAAGGTGAGGACAGCAGCCCAGACGAGGAGGAAGACCAGGTGAGTGGCATGAGTCAGT
GTCCATGGCAGGAAAAATTGTCCCATCCGAGGCCACGCTCCTCACCTGGTGGCCCAGCAAGCCC
ATTCCAGCCACACCCCAGGAGGCTCAAGAGTCTCCAAGCCCAGGAAATGATTCTGAAAATGAAG
GAAGCAATCAGTGAAAGGATCAAGTTCGTCCCTGTGCCTTCTGGGCCCCAGGACTGGGCCGAGG
AGGAGGAGAAGACAGTGGTCTCCCCGAGACCTAGCACAGCCAGTGGCAGCAGCAGGGCCCCTGT
GAGGCAGAGAAGGTCCCACTCAGAGGGGTGTCTGAAGAGTCACGTGGAGGACCCCACCCTCCAG
GAGCTGCAGAGGGTCCAGAGAGACCTTAGCCAGAGGCTGGAGGCATTTTATGCCCTGGGTGCAC
ATCTGGGGCAGAACTCAAAGCAGGTTCTGCAGCCCCGGGCCACAGCTCTGAGGCCCGACACCTG
CAGGGTTGCACCCAGCAACACCACCAGCAAACTGAAGGCTTCCCTCACCAAGGACTTCAGCATT
TTACCGAGTCAGGCCAAGAGCATCTTACAGAAATGCAGTCCCCACCCTGAGAGCAAACAGTCCC
CACAGGGGAAGGCCGAGGGGCTCCGGGTCACCACTCCATCGGGTGAGAAGGCCCATGAGGCTGC
AGGGGCCGAGGACTGGAATGTCAGGAGCTGTCCCACCAGAACATCAGTCAAGAAACTCATTGAA
ACCTTCAGTCCCACTGAGGGTCTGAGGACCCTGGGCGATTTCAAGGACTCTGGGCCAAGCCCCT
GCCTCAGGAAGTGGGGGATCCCCATCATACCTCCCAGATTTCCTATATACAGGGGACTTTCCCC
TTTGTATCCAAAGCCCCAAATTTCTCCAGCTGCAAGTGGAGACTCTCTCAAGGTGGGCCCAGGC
TGGAGGCCCCTAGCTCCCCTTTTCCCTCCTCTGCTTACAGCAGGAGCGTGCAAGAGGGAGGACC
CCAATTTTAACTGTGAAACAGAAGAGGATCTAGAGCACCTCCCTCCACCACCTCTGGAAATCCT
GATGGACAAATCATTCACCTCTCTGGAGTCCCCAGAAAGCAGCAAGCCAGCAGGAAGCTCCTCC
AAAGGGACCCGGGCTCCGGGGCTCGGATCGGCCGACCCCGACAGGAGAACGTGGGCTTCGCCAA
AGCTAAGAGCCTCCTTGAGCCCCACTGACCTGCTACCCAGCAAGAGCGCGAATGCCCCCGCCAG
GCCCCACGGCACAGGCCCGGGGGGCAGCAAGAGCGGCTGCGGTACCAGAAAGCTCACCTTGGAC
CTGAGCCCCCCGCCCGCAGCCAGTGGAAACCCAGAGGCGGAGGGCAGAGGGGCTCGGAGTGCGG
CGCCTGCAGACAGGGCCACCAGCCTGTGCAAGCATCCCCAGAAGGCCACCCCCTGGCACCACCC
CAGCCACACATGTGGACAGCACAGGACCTGGGAACCCAGCCCGGCCAGGCCAGCGGGGGGGCCA
CGCTCTCCCGAGGGCCCCCGGCAGAGCCAAGACCGGAGCCCCCTGCTCGCCAGCAAGGCCTCTC
CCACAAGAGGCTCCTGGACACGCCGAGCAGACAGGAGGCAGCCGGCCTGTCACAGGCCCGCCCA
GCCGAGTGCTCCCTCTGTGCAAGGCCCCCCCAGCGCACCCGGCAGCCCCCCGTGCAGCCCCCCG
CTGCGGGGCCCCCCGGCCAGGGGGGAAGGAGCGCCCAGCGCTGCGCCCGAGAGCCCGCCCGCGC
AGGACGAGGCCTGCAGCCCCCCGGGCCCGCGCACAGAGGCCAGTTCCCCCTCCTCGCGCCCCTC
GCCCTCGCCCCCCGTGTCGCCTGCTCTGGGGCGCAGGTGGCCGGGCGCTTCTGGGCAGGGCGGG
GGCGGCGCAGCCAGAGCCTCGGGGAACCCGCGCCCCCTCTTCTGGCCCGCGTCCTCGCCCGCGT
TTGAAGCCGCCCCACCCGGGCCGCCGCCCCCTGAGGCTGGGGGCCCCCGGGGGACCCCCGCGGG
CGGCTGGAGGAGCTCGGGGCCCGCGGCCAGGGCCGCCTCCCAGCGGGGCGGGGCTCTGTGCGCG
CTCAACCCCCGGCCTTTCATCAGAAGGACCGCTTCGGACCCGCGCCCCGGCGGCCGCCCCCGGC
TGCCCGCCCCCCGGGCGGCCGGCGACGCGGGGGGCTCCGCGCTCAGCAGGAGCAGCAGCAGTGA
GGAGAGCCTCAAGAAGGACACAGAGCCATGGAACAGCCCCTGTGCCCCAGAACTGAAGGGTGGT
AGCAGGGGTGCGTCTCCCCCAGAGCTCTGCGTGTTGGGCCACGGGCTGCAACGGGAGGTCAGAG
CCAGCCGCACCCAGGACAAGCCTCAACAGAAAGAAGTAGCTAATCAGGCTAATCAACAGGGTGA
CACTGATGCCAGTCACCCCAGAAGGCAATGGGAGACAGCCAAGCATCAGACTGTCCCATAAATG
GTGGGCCCACCAAACTCCTATGGAGGTGTCCTAGAACCATCTGGAAGGTGCAATGCCCAGAGAG
TCTGCTAAATTCTACACATTTGCCATTTTCAGCCCCAGATTCTGGTTTGCCTAAGGGTTCAAAG
ATGAACTATAACTTTGGACCCCAGGGTGACATTCTTTAATCTTTCAAGTCCTGGCCTTAACTTA
GGGGGGAAAATACATTTATCGCCTACTTGATGGGCTGGGGGGTTTTACCTGGGTTAGTTTCATG
GACTCATTTAATCTGCACAACAACGAATGGAGCAGATAGCATGTTCCTGGTTTTGCAGATACGA
AAACCAAAGCGCCCCTTCCCCTACCCCAACCCCAAAGTGTCTTGCCTGAGGTCTCACAGCCAGG
AAGAGAAGAGAGCAAAAATTTGAACAGGTGTGCCTGACACCAGAATCCCTTGTTTTTCGTTACG
TTTCATTGCCCATGACTATTCCATCACTCCATTTGCCTAAAGCAAACATAGTTGTACAAATGGT
TGGAAAGCGTTGTGGTTTTTTCACAGGTTACACAGCGGCACAGCATTCAAGTCACCATTGAGAG
CTTTGTTGAGAAGCTGATTACTCCAGAGATAGGAAGACCATGGAATTAAGACACACACCCTCCT
TCTCCTCCCTCCCAAGTACAGACCCAAAGCCCTCAACACAGCTTCCAGCCCACTCCTTTGGCTG
AGCGGCCTCGGGTTGCTTCTCAGAGGCGTGTCTTGGATGCTCTGCCCTACGCATCCACATGCCT
CTCACACTGGGTGCAATCATGCCTTGCAAACAAGCAGCCTATTCTCCACGCCCTATAGGGGCTG
GAGCGCGGGAAGATGCACGCACTCACACACACACACACACACACACACACACACACACGTACGT
GCATGCACATGCCAGTCTCTCCCAGGGGCTTCTCGGCCAACTTTATTCCCAAGTCATCTGGACA
ACTTCTGCCAGAGTCAAAATGGAGTGAAGAACTACCGTTCCTGCCAAAACCCTGCTTCTGCCAA
CGCGCTAGATATTTGCTGCAGATCTTGGAACTCTTCCACTGGTGGCTGTGAGTGCTTTCTATTT
AGAAAGAATTTGCAGTAATTGGGTGATTCAGTGCCGGCTCAGTAGGTTGTCAAAAGACAAGAAT
TCTCACCCACGGGGTATGGCTAAGGGGCCATCCTCCAGATCTGCTGCAAAGCTGATTTTCTTTT
TAAGTTTGGAAAAATTACAGACTTCAAGTCCTTTCTGGTTGAAATAGATCATGGCTCGAGAACA
AGTTAAGCTGGGTCCTACGGGCTACAGCTACCTGTAAATGAAGTCACCTTGACTCATTCAGTTA
TTAAAATAGGGGTGACAAGGATAATCTCTTCAAAGGCACCCAAAGAATCATTGATTAAACCACC
AACAGGGGCCACAAGCCACCCCTCTATTGGGAAATGTCTGTACACACCCAGCTGAATGCTCACG
GTTGCTGCGTGGCGGCACTAATTGTCAGAGCAGAGCTCGGGCAGCTGTAGGGCAGACTTCGGGC
AGAGCCACATGCAGGGGTGAGTGGGTGGACCTGGGGATCCGCCTGGCCACAGGAAATGGGAGCA
AGTCCAGCTACCCGGGCAGGGCAGGGCTGAGGTAAGTGTGTGGGAACAGCCAGCTTTGGGAAAC
ATGCGTGCTACAAAGCTGGCCAGTCTGCCTACCTGGGCAGGCCAGCTGCAGTGGGGAGGGAAGG
GGGGTGTGGGCCCTAGGCAGGCTGGGCACGGAGCCAAGCCAAGGGGAAGCAAGCAGGAGAAGAA
ATGCTGCAGCTCATGGGTAAGCAGGCTCAGGATGGACCCTGCCCTGGGCAAGGGTTTAGGGGCA
GACTTCCCAAGGTCTGGAGAAACAAAGCAGAAACAGAGAAGCAAAGGGAGATTGGACAGGGACG
CCATTCATGAAATGGGGAGACAATCTGGGGTGTTATCACAGAGACAATAAAAAAATCTAGTTCT
GGGAACCAGGATAGGAATTGGGAGCCAGATCTGCAAGAGGAGGAAGAAAGGCCAACCTCTCCCT
CAAAGGATCCCCACTCAGAGGTTTGGGCTGGTTTAAGTCTTTAGGGGGGCCGAGTGTACCCAGC
TACGGCAATGAAAGCTAGGTGTGGACACCTGGGAGCCACGTACCCTATTACATCCCAGAGGGAG
TCAGCGTCAGAGAGAATGCCCTGCAAGAGTAGGGCCTCCCTGAGTGTGCCGGGCAGGAGGCTCT
CTGAGGGCAGACGGTGCCCCTTCCCCCGAGCTAGGCCACTAAGCAGCAGTGACATCCACCGTTC
CTGCGCTGCAGGCAGCGCTGAAGGATAGAGGGCTTCCAGGATTCCTGTGTCAGGGGCCCTGACC
TGCTCCCTCCACATCTACTGAGCACCTAGTTGTACCAGGACAGTGCCAGACTCCTGCTATATAC
CCCCATACATGATGTCGTGAGAGGCCTCCCGGTCCAAGCAGCAATGACAATGAGGTGATATAGA
CTCTTGTGTTGGTGAAGGACCCAAAGTCTTCAAGAATCCCAAGTCAGCTTCCTCTGGGGTAAAG
CAGAGGGGTTGCAAGGCCAAGGTCAAAGGTGAAGCAGTGCCTAGCTGGCACAGGAGCAGATGGG
TCACAGATGTGGTTTTTTGGCTACCATCACAACCACCAGACTTAGCTCAAATTATAGGTGAATT
AGACATTGTATAAAAGAAATTAAATGTACCATGACAGGCAACTTGAGTGGCTTCAATTCAGTTT
CACCCCTCCTTGAGAACAAGCCTTTACTCAAACCCATGTCTTTGGTTCCTGCCTTGGAGAGCAT
GCTGCTGGTGGTCATGAGGGACAAGCCCAATCCCACAGCTTCTCAGGTCACTCTCACGCACCCA
CCTCTCCTCCACCCAAGAACCTCATCCTTGCTGAGCCCAATCCACTTCTTGAGCTCAAAGCAGA
AGGGAGAGCAGAGTTTCTATTTTGTCTTATCTTTTAAAAGTAATTATACCAATAGGCCCAACGC
A

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Protein Sequences


Protein RefSeqs	NP_001271388	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AEM43812	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000049531.2
	ENSCAFP00030022993.1
	ENSCAFP00040024347.1
	ENSCAFP00040024377.1
	ENSCAFP00040024397.1
	ENSCAFP00845015576
	ENSCAFP00845015576.1

RefSeq Acc Id:

NP_001271388 ⟸ NM_001284459

- UniProtKB:

F1PFL2 (UniProtKB/TrEMBL), G1JSL3 (UniProtKB/TrEMBL), A0A8I3NIP9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGCTPSHNDIVNSVAKSGIQFFKKPKAILPGRQGGSERCSIPLLVPSSTCYDSGGGSSQAQRLA
EEQPKARWTQSPNEGLYQLTRDPKGKDMEGLPPETKTSRSQLDESQSHMAKDLPSKTQSSHGFQ
GAAFSGEESEESTTQQRKLRCHTCGQQGHFCQTILPAHEPKGKVDFPEPLVKAHQHAYTYLHSC
LSKYEAILCIIHQATQTQELLQPMVTFLLLCVDEVNRLLGEISKDGEMLLKEVKGDLSWPLGKG
EPHEQPDLLQQLLQYTVSKLLVLSGTVASITGSFLEGSGNYLHATACHLGNKLSTKRGVDECLL
RALGQLESLASGHGDPGMQDRPLCSEDSGIGADNESVHLVDKLGKQTSWDSASEPAEWMPVLSS
TGEAKLSGHSWQQGPFRMGSDRPQDCPLSRPPTAKVQPTAWGGAGGPWPSSTGPENTTARPGGI
SKSALCDSLGIGISTEAHFSKGSRLMDTPSLSEGEDSSPDEEEDQVSGMSQCPWQEKLSHPRPR
SSPGGPASPFQPHPRRLKSLQAQEMILKMKEAISERIKFVPVPSGPQDWAEEEEKTVVSPRPST
ASGSSRAPVRQRRSHSEGCLKSHVEDPTLQELQRVQRDLSQRLEAFYALGAHLGQNSKQVLQPR
ATALRPDTCRVAPSNTTSKLKASLTKDFSILPSQAKSILQKCSPHPESKQSPQGKAEGLRVTTP
SGEKAHEAAGAEDWNVRSCPTRTSVKKLIETFSPTEGLRTLGDFKDSGPSPCLRKWGIPIIPPR
FPIYRGLSPLYPKPQISPAASGDSLKVGPGWRPLAPLFPPLLTAGACKREDPNFNCETEEDLEH
LPPPPLEILMDKSFTSLESPESSKPAGSSSKGTRAPGLGSADPDRRTWASPKLRASLSPTDLLP
SKSANAPARPHGTGPGGSKSGCGTRKLTLDLSPPPAASGNPEAEGRGARSAAPADRATSLCKHP
QKATPWHHPSHTCGQHRTWEPSPARPAGGPRSPEGPRQSQDRSPLLASKASPTRGSWTRRADRR
QPACHRPAQPSAPSVQGPPSAPGSPPCSPPLRGPPARGEGAPSAAPESPPAQDEACSPPGPRTE
ASSPSSRPSPSPPVSPALGRRWPGASGQGGGGAARASGNPRPLFWPASSPAFEAAPPGPPPPEA
GGPRGTPAGGWRSSGPAARAASQRGGALCALNPRPFIRRTASDPRPGGRPRLPAPRAAGDAGGS
ALSRSSSSEESLKKDTEPWNSPCAPELKGGSRGASPPELCVLGHGLQREVRASRTQDKPQQKEV
ANQANQQGDTDASHPRRQWETAKHQTVP

hide sequence

Ensembl Acc Id:

ENSCAFP00000031832 ⟸ ENSCAFT00000036452

Ensembl Acc Id:

ENSCAFP00000049531 ⟸ ENSCAFT00000071574

Ensembl Acc Id:

ENSCAFP00845015576 ⟸ ENSCAFT00845019886

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000023626	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030014222	UniProtKB/TrEMBL
	ENSCAFG00040015233	UniProtKB/TrEMBL
	ENSCAFG00845011214	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000071574.2	UniProtKB/TrEMBL
	ENSCAFT00030026333.1	UniProtKB/TrEMBL
	ENSCAFT00040028033.1	UniProtKB/TrEMBL
	ENSCAFT00040028063.1	UniProtKB/TrEMBL
	ENSCAFT00040028085.1	UniProtKB/TrEMBL
	ENSCAFT00845019886	ENTREZGENE
	ENSCAFT00845019886.1	UniProtKB/TrEMBL
InterPro	PCARE	UniProtKB/TrEMBL
KEGG Report	cfa:100688240	UniProtKB/TrEMBL
NCBI Gene	C17H2orf71	ENTREZGENE
PANTHER	PHOTORECEPTOR CILIUM ACTIN REGULATOR	UniProtKB/TrEMBL
	PTHR22017	UniProtKB/TrEMBL
Pfam	Retinal	UniProtKB/TrEMBL
UniProt	A0A8C0NB34_CANLF	UniProtKB/TrEMBL
	A0A8C0SPB8_CANLF	UniProtKB/TrEMBL
	A0A8C0SQ55_CANLF	UniProtKB/TrEMBL
	A0A8C0SS25_CANLF	UniProtKB/TrEMBL
	A0A8I3NIP9	ENTREZGENE, UniProtKB/TrEMBL
	F1PFL2	ENTREZGENE, UniProtKB/TrEMBL
	G1JSL3	ENTREZGENE
UniProt Secondary	A0A8P0T2C6	UniProtKB/TrEMBL
	G1JSL3	UniProtKB/TrEMBL
VGNC ID	VGNC:49223	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-05-15	PCARE	photoreceptor cilium actin regulator	C17H2orf71	chromosome 17 C2orf71 homolog	Symbol and/or name change	5135510	APPROVED
2017-09-12	C17H2orf71	chromosome 17 C2orf71 homolog		chromosome 17 open reading frame, human C2orf71	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIA

Imported Disease Annotations - OMIM

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