LOC102154185 (ubiquitin-associated protein 1-like) - Rat Genome Database

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Gene: LOC102154185 (ubiquitin-associated protein 1-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC102154185
Name: ubiquitin-associated protein 1-like
RGD ID: 12350515
Description: ENCODES a protein that exhibits ubiquitin binding (inferred); INVOLVED IN ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (inferred); FOUND IN ESCRT I complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin-associated protein 1 pseudogene
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,784,591 - 99,787,191 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1100,179,579 - 100,182,755 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01100,425,551 - 100,428,730 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11100,070,733 - 100,073,907 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,782,994 - 99,786,164 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01100,538,227 - 100,541,403 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in LOC102154185
43 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038466821   ⟹   XP_038322749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11100,070,733 - 100,073,907 (+)NCBI
RefSeq Acc Id: XM_038527523   ⟹   XP_038383451
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01100,538,227 - 100,541,403 (+)NCBI
RefSeq Acc Id: XM_038591832   ⟹   XP_038447760
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0199,782,994 - 99,786,164 (+)NCBI
RefSeq Acc Id: XM_038619800   ⟹   XP_038475728
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1100,179,579 - 100,182,755 (+)NCBI
RefSeq Acc Id: XM_038655599   ⟹   XP_038511527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01100,425,551 - 100,428,730 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038322749   ⟸   XM_038466821
RefSeq Acc Id: XP_038447760   ⟸   XM_038591832
RefSeq Acc Id: XP_038511527   ⟸   XM_038655599
- UniProtKB: A0A8C0MCJ6 (UniProtKB/TrEMBL),   A0A8I3S6A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038475728   ⟸   XM_038619800
- UniProtKB: A0A8C0MCJ6 (UniProtKB/TrEMBL),   A0A8I3S6A3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038383451   ⟸   XM_038527523
- UniProtKB: A0A8C0MCJ6 (UniProtKB/TrEMBL),   A0A8I3S6A3 (UniProtKB/TrEMBL)
Protein Domains
UBA   UMA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001905 UniProtKB/TrEMBL
  ENSCAFG00000002375 UniProtKB/TrEMBL
  ENSCAFG00030005957 UniProtKB/TrEMBL
  ENSCAFG00040002666 UniProtKB/TrEMBL
  ENSCAFG00040008041 UniProtKB/TrEMBL
  ENSCAFG00845000835 UniProtKB/TrEMBL
  ENSCAFG00845022972 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000003728.5 UniProtKB/TrEMBL
  ENSCAFT00000069348.2 UniProtKB/TrEMBL
  ENSCAFT00030011034.1 UniProtKB/TrEMBL
  ENSCAFT00040005081.1 UniProtKB/TrEMBL
  ENSCAFT00040015129.1 UniProtKB/TrEMBL
  ENSCAFT00845001378.1 UniProtKB/TrEMBL
  ENSCAFT00845040618.1 UniProtKB/TrEMBL
Gene3D-CATH UBAP1 SOUBA domain UniProtKB/TrEMBL
InterPro UBA UniProtKB/TrEMBL
  UBAP-1-like_UBA2 UniProtKB/TrEMBL
  UBAP1 UniProtKB/TrEMBL
  UBAP1_C UniProtKB/TrEMBL
  UMA UniProtKB/TrEMBL
NCBI Gene LOC102154185 ENTREZGENE
PANTHER PTHR15960 UniProtKB/TrEMBL
  UBIQUITIN-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
Pfam UBAP-1_UBA2 UniProtKB/TrEMBL
PROSITE UBA UniProtKB/TrEMBL
  UMA UniProtKB/TrEMBL
UniProt A0A8C0MCJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PUT2_CANLF UniProtKB/TrEMBL
  A0A8I3MFJ3_CANLF UniProtKB/TrEMBL
  A0A8I3S6A3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC102154185  ubiquitin-associated protein 1-like  LOC102154185  ubiquitin-associated protein 1 pseudogene  Symbol and/or name change 5135510 APPROVED