NAPSA (napsin A aspartic peptidase) - Rat Genome Database

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Pathways
Gene: NAPSA (napsin A aspartic peptidase) Canis lupus familiaris
Analyze
Symbol: NAPSA
Name: napsin A aspartic peptidase
RGD ID: 12348016
Description: ENCODES a protein that exhibits aspartic-type endopeptidase activity (inferred); endopeptidase activity (inferred); peptidase activity (inferred); INVOLVED IN membrane protein proteolysis (inferred); proteolysis (inferred); surfactant homeostasis (inferred); ASSOCIATED WITH Breast Cancer, Familial (ortholog); lung cancer (ortholog); melanoma (ortholog); FOUND IN alveolar lamellar body (inferred); extracellular region (inferred); lysosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: napsin 1; napsin-A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,351,842 - 106,361,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,318,488 - 106,374,987 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1105,924,958 - 105,934,699 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01106,862,954 - 106,872,701 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,829,581 - 106,896,644 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,535,027 - 106,544,763 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,176,569 - 106,186,313 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,017,232 - 107,026,974 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NAPSA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,351,842 - 106,361,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,318,488 - 106,374,987 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1105,924,958 - 105,934,699 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01106,862,954 - 106,872,701 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,829,581 - 106,896,644 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,535,027 - 106,544,763 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,176,569 - 106,186,313 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,017,232 - 107,026,974 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
NAPSA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,358,477 - 50,369,302 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,358,472 - 50,369,342 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371950,861,734 - 50,868,896 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,553,546 - 55,560,743 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341955,553,546 - 55,560,743NCBI
Celera1947,911,985 - 47,919,182 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1947,199,888 - 47,207,085 (-)NCBIHuRef
CHM1_11950,863,518 - 50,870,712 (-)NCBICHM1_1
T2T-CHM13v2.01953,446,012 - 53,456,870 (-)NCBIT2T-CHM13v2.0
Napsa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,221,869 - 44,236,270 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,221,804 - 44,236,295 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38744,572,445 - 44,586,846 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,572,380 - 44,586,862 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37751,827,815 - 51,842,216 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36744,440,487 - 44,454,888 (+)NCBIMGSCv36mm8
Celera740,022,411 - 40,036,713 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.84NCBI
Napsa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,200,967 - 104,213,603 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1104,200,960 - 104,213,608 (+)EnsemblGRCr8
mRatBN7.2195,064,726 - 95,077,101 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,064,900 - 95,077,094 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1100,450,303 - 100,462,481 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,922,947 - 108,935,138 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,213,368 - 102,225,554 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1102,838,136 - 102,850,331 (+)NCBI
Lyon_Normotensive1107,948,204 - 107,960,395 (+)NCBI
Lyon_Hypertensive1104,481,508 - 104,493,704 (+)NCBI
F344_StmMcwi1102,938,679 - 102,950,860 (+)NCBI
Rnor_6.01100,577,497 - 100,589,802 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,577,056 - 100,589,836 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01101,642,884 - 101,655,189 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4195,050,761 - 95,062,774 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera189,327,190 - 89,339,345 (+)NCBICelera
RGSC_v3.1195,128,906 - 95,140,864 (+)NCBI
Cytogenetic Map1q22NCBI
Napsa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955559769,477 - 778,543 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_004955559769,555 - 777,970 (+)NCBIChiLan1.0ChiLan1.0
NAPSA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,423,327 - 56,435,810 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,344,656 - 58,357,209 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01947,321,581 - 47,333,307 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11956,225,421 - 56,232,978 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1956,225,421 - 56,232,822 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
Napsa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1156,055,470 - 6,063,239 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934922,328,347 - 22,340,805 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936889204,384 - 208,110 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936889204,337 - 216,795 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAPSA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,221,205 - 55,230,449 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1655,221,203 - 55,230,609 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,070,030 - 51,079,473 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAPSA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap167,722,891 - 7,729,656 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366607323,402,227 - 23,408,910 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1643,416,721 - 43,428,423 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl643,416,338 - 43,428,297 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Napsa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248324,150,415 - 4,158,399 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248324,150,298 - 4,162,432 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Napsa
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12154,948,365 - 154,960,882 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in NAPSA
73 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000005351   ⟹   ENSCAFP00000004955
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1106,351,187 - 106,362,528 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000061009   ⟹   ENSCAFP00000057740
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1106,318,488 - 106,361,578 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000082536   ⟹   ENSCAFP00000050562
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1106,351,187 - 106,374,987 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000084907   ⟹   ENSCAFP00000060216
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1106,351,187 - 106,363,417 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845031545   ⟹   ENSCAFP00845024696
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1106,829,581 - 106,872,682 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845031687   ⟹   ENSCAFP00845024804
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1106,862,819 - 106,872,682 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845031810   ⟹   ENSCAFP00845024888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1106,865,977 - 106,872,682 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032129   ⟹   ENSCAFP00845025120
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1106,865,991 - 106,896,644 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032203   ⟹   ENSCAFP00845025174
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1106,865,991 - 106,873,521 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032259   ⟹   ENSCAFP00845025216
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1106,865,991 - 106,872,632 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845032318   ⟹   ENSCAFP00845025261
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1106,866,670 - 106,872,682 (+)Ensembl
RefSeq Acc Id: XM_038467406   ⟹   XP_038323334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11106,535,027 - 106,544,763 (+)NCBI
RefSeq Acc Id: XM_038528104   ⟹   XP_038384032
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01107,017,232 - 107,026,974 (+)NCBI
RefSeq Acc Id: XM_038592401   ⟹   XP_038448329
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01106,176,569 - 106,186,313 (+)NCBI
RefSeq Acc Id: XM_038656193   ⟹   XP_038512121
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01106,862,954 - 106,872,701 (+)NCBI
RefSeq Acc Id: XM_533610   ⟹   XP_533610
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11106,351,842 - 106,361,592 (+)NCBI
Dog10K_Boxer_Tasha1105,924,958 - 105,934,699 (+)NCBI
Sequence:
RefSeq Acc Id: XP_533610   ⟸   XM_533610
- UniProtKB: A0A8C0L5X5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000004955   ⟸   ENSCAFT00000005351
Ensembl Acc Id: ENSCAFP00000060216   ⟸   ENSCAFT00000084907
Ensembl Acc Id: ENSCAFP00000050562   ⟸   ENSCAFT00000082536
Ensembl Acc Id: ENSCAFP00000057740   ⟸   ENSCAFT00000061009
RefSeq Acc Id: XP_038323334   ⟸   XM_038467406
RefSeq Acc Id: XP_038448329   ⟸   XM_038592401
RefSeq Acc Id: XP_038512121   ⟸   XM_038656193
- UniProtKB: A0A8C0L5X5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038384032   ⟸   XM_038528104
- UniProtKB: A0A8C0L5X5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845025261   ⟸   ENSCAFT00845032318
Ensembl Acc Id: ENSCAFP00845024888   ⟸   ENSCAFT00845031810
Ensembl Acc Id: ENSCAFP00845025216   ⟸   ENSCAFT00845032259
Ensembl Acc Id: ENSCAFP00845025174   ⟸   ENSCAFT00845032203
Ensembl Acc Id: ENSCAFP00845024696   ⟸   ENSCAFT00845031545
Ensembl Acc Id: ENSCAFP00845024804   ⟸   ENSCAFT00845031687
Ensembl Acc Id: ENSCAFP00845025120   ⟸   ENSCAFT00845032129
Protein Domains
Peptidase A1

Promoters
RGD ID:13682181
Promoter ID:EPDNEW_C250
Type:multiple initiation site
Name:NAPSA_1
Description:napsin A aspartic peptidase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11106,352,107 - 106,352,167EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003342 Ensembl
  ENSCAFG00845017555 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845031545.1 UniProtKB/TrEMBL
  ENSCAFT00845031687.1 UniProtKB/TrEMBL
  ENSCAFT00845031810.1 UniProtKB/TrEMBL
  ENSCAFT00845032129.1 UniProtKB/TrEMBL
  ENSCAFT00845032203.1 UniProtKB/TrEMBL
  ENSCAFT00845032259.1 UniProtKB/TrEMBL
  ENSCAFT00845032318 ENTREZGENE
  ENSCAFT00845032318.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.70.10 UniProtKB/TrEMBL
InterPro Aspartic_peptidase_A1 UniProtKB/TrEMBL
  Aspartic_peptidase_AS UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/TrEMBL
  Peptidase_aspartic_dom_sf UniProtKB/TrEMBL
NCBI Gene NAPSA ENTREZGENE
PANTHER NAPSIN-A UniProtKB/TrEMBL
  PTHR47966 UniProtKB/TrEMBL
Pfam Asp UniProtKB/TrEMBL
PRINTS PEPSIN UniProtKB/TrEMBL
PROSITE ASP_PROTEASE UniProtKB/TrEMBL
  PEPTIDASE_A1 UniProtKB/TrEMBL
Superfamily-SCOP SSF50630 UniProtKB/TrEMBL
UniProt A0A8C0L5X5 ENTREZGENE
  A0A8I3P250_CANLF UniProtKB/TrEMBL
  A0A8I3P2A6_CANLF UniProtKB/TrEMBL
  A0A8I3P3J7_CANLF UniProtKB/TrEMBL
  A0A8I3P9E3_CANLF UniProtKB/TrEMBL
  A0A8I3PAT9_CANLF UniProtKB/TrEMBL
  A0A8I3S059_CANLF UniProtKB/TrEMBL
  A0A8I3S070_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:43624 ENTREZGENE