DKKL1 (dickkopf like acrosomal protein 1) - Rat Genome Database

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Gene: DKKL1 (dickkopf like acrosomal protein 1) Canis lupus familiaris
Analyze
Symbol: DKKL1
Name: dickkopf like acrosomal protein 1
RGD ID: 12316285
Description: INVOLVED IN canonical Wnt signaling pathway (ortholog); positive regulation of fat cell differentiation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); FOUND IN acrosomal vesicle (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dickkopf-like 1 (soggy); dickkopf-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,109,787 - 107,113,932 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,109,791 - 107,113,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,693,253 - 106,697,206 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,630,262 - 107,634,229 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,630,266 - 107,634,131 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,303,172 - 107,307,137 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,945,347 - 106,949,315 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,786,470 - 107,790,436 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DKKL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,109,787 - 107,113,932 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,109,791 - 107,113,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,693,253 - 106,697,206 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,630,262 - 107,634,229 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,630,266 - 107,634,131 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,303,172 - 107,307,137 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,945,347 - 106,949,315 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,786,470 - 107,790,436 (-)NCBIUU_Cfam_GSD_1.0
DKKL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,360,515 - 49,375,116 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,361,783 - 49,375,116 (+)EnsemblGRCh38hg38GRCh38
GRCh371949,867,134 - 49,878,373 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,558,854 - 54,570,185 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,558,853 - 54,570,183NCBI
Celera1946,733,898 - 46,745,228 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,243,555 - 46,254,943 (+)NCBIHuRef
CHM1_11949,868,966 - 49,880,350 (+)NCBICHM1_1
T2T-CHM13v2.01952,357,951 - 52,372,571 (+)NCBIT2T-CHM13v2.0
Dkkl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,856,949 - 44,861,592 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,856,943 - 44,861,571 (-)EnsemblGRCm39 Ensembl
GRCm38745,207,525 - 45,212,165 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,207,519 - 45,212,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,462,895 - 52,467,253 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,075,567 - 45,079,892 (-)NCBIMGSCv36mm8
Celera740,663,416 - 40,667,775 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.19NCBI
Dkkl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,830,462 - 104,835,711 (-)NCBIGRCr8
mRatBN7.2195,694,010 - 95,699,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,694,010 - 95,699,259 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,079,409 - 101,084,658 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,552,075 - 109,557,324 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,842,478 - 102,847,727 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,205,426 - 101,210,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,205,426 - 101,210,675 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,270,284 - 102,275,533 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,684,794 - 95,690,043 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera189,952,293 - 89,957,542 (-)NCBICelera
Cytogenetic Map1q22NCBI
Dkkl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,445,149 - 1,449,004 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,445,082 - 1,449,167 (-)NCBIChiLan1.0ChiLan1.0
DKKL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,479,696 - 55,493,609 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,398,633 - 57,413,230 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,375,301 - 46,389,822 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,300,173 - 55,313,690 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,301,955 - 55,313,690 (+)Ensemblpanpan1.1panPan2
Dkkl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,638,880 - 21,645,597 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,257,698 - 3,264,565 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,257,744 - 3,263,787 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DKKL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,463,759 - 54,468,361 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,462,367 - 54,468,363 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DKKL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,544,459 - 42,555,653 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,547,593 - 42,555,566 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607322,470,364 - 22,482,443 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dkkl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,816,277 - 4,819,740 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,816,383 - 4,820,082 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DKKL1
42 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003638821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005616315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038467551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038467552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038467553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038592554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038592555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038592556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038656343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038656344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038656345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_859219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000005919   ⟹   ENSCAFP00000005483
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1107,109,791 - 107,113,811 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845000156   ⟹   ENSCAFP00845000121
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1107,630,266 - 107,634,131 (-)Ensembl
RefSeq Acc Id: XM_003638821   ⟹   XP_003638869
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11107,109,787 - 107,113,927 (-)NCBI
Dog10K_Boxer_Tasha1106,693,253 - 106,697,197 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005616315   ⟹   XP_005616372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11107,109,787 - 107,113,927 (-)NCBI
Dog10K_Boxer_Tasha1106,693,253 - 106,697,206 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038467551   ⟹   XP_038323479
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11107,303,172 - 107,307,128 (-)NCBI
RefSeq Acc Id: XM_038467552   ⟹   XP_038323480
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11107,303,172 - 107,307,137 (-)NCBI
RefSeq Acc Id: XM_038467553   ⟹   XP_038323481
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11107,303,172 - 107,307,128 (-)NCBI
RefSeq Acc Id: XM_038528256   ⟹   XP_038384184
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01107,786,470 - 107,790,427 (-)NCBI
RefSeq Acc Id: XM_038528257   ⟹   XP_038384185
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01107,786,470 - 107,790,436 (-)NCBI
RefSeq Acc Id: XM_038528258   ⟹   XP_038384186
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01107,786,470 - 107,790,427 (-)NCBI
RefSeq Acc Id: XM_038592554   ⟹   XP_038448482
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01106,945,347 - 106,949,306 (-)NCBI
RefSeq Acc Id: XM_038592555   ⟹   XP_038448483
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01106,945,347 - 106,949,315 (-)NCBI
RefSeq Acc Id: XM_038592556   ⟹   XP_038448484
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01106,945,347 - 106,949,306 (-)NCBI
RefSeq Acc Id: XM_038656343   ⟹   XP_038512271
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01107,630,262 - 107,634,220 (-)NCBI
RefSeq Acc Id: XM_038656344   ⟹   XP_038512272
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01107,630,262 - 107,634,229 (-)NCBI
RefSeq Acc Id: XM_038656345   ⟹   XP_038512273
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01107,630,262 - 107,634,220 (-)NCBI
RefSeq Acc Id: XM_859219   ⟹   XP_864312
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11107,109,787 - 107,113,932 (-)NCBI
Dog10K_Boxer_Tasha1106,693,253 - 106,697,197 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005616372   ⟸   XM_005616315
- Peptide Label: isoform X2
- UniProtKB: E2QYS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_864312   ⟸   XM_859219
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003638869   ⟸   XM_003638821
- Peptide Label: isoform X1
- UniProtKB: A0A8P0N6I0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000005483   ⟸   ENSCAFT00000005919
RefSeq Acc Id: XP_038323480   ⟸   XM_038467552
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038323481   ⟸   XM_038467553
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038323479   ⟸   XM_038467551
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038448483   ⟸   XM_038592555
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038448484   ⟸   XM_038592556
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038448482   ⟸   XM_038592554
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038512272   ⟸   XM_038656344
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LN60 (UniProtKB/TrEMBL),   A0A8C0NHJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038512273   ⟸   XM_038656345
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038512271   ⟸   XM_038656343
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Z1E6 (UniProtKB/TrEMBL),   A0A8I3M9V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038384185   ⟸   XM_038528257
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LN60 (UniProtKB/TrEMBL),   A0A8C0NHJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038384186   ⟸   XM_038528258
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038384184   ⟸   XM_038528256
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Z1E6 (UniProtKB/TrEMBL),   A0A8I3M9V3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845000121   ⟸   ENSCAFT00845000156


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003681 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016683 UniProtKB/TrEMBL
  ENSCAFG00040018336 UniProtKB/TrEMBL
  ENSCAFG00845000090 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000005919.5 UniProtKB/TrEMBL
  ENSCAFT00030030843.1 UniProtKB/TrEMBL
  ENSCAFT00040033881.1 UniProtKB/TrEMBL
  ENSCAFT00845000156 ENTREZGENE
  ENSCAFT00845000156.1 UniProtKB/TrEMBL
InterPro DKK1-4 UniProtKB/TrEMBL
  DKKL1 UniProtKB/TrEMBL
KEGG Report cfa:610302 UniProtKB/TrEMBL
NCBI Gene DKKL1 ENTREZGENE
PANTHER DICKKOPF-LIKE PROTEIN 1 UniProtKB/TrEMBL
  DICKKOPF3-LIKE 3 UniProtKB/TrEMBL
UniProt A0A8C0LN60 ENTREZGENE
  A0A8C0NHJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z1E6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3M9V3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N6I0 ENTREZGENE, UniProtKB/TrEMBL
  E2QYS1 ENTREZGENE
VGNC ID VGNC:39973 ENTREZGENE