DKKL1 (dickkopf like acrosomal protein 1) - Rat Genome Database

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Gene: DKKL1 (dickkopf like acrosomal protein 1) Canis lupus familiaris
Analyze
Symbol: DKKL1
Name: dickkopf like acrosomal protein 1
RGD ID: 12316285
Description: INVOLVED IN positive regulation of fat cell differentiation (ortholog); FOUND IN acrosomal vesicle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: dickkopf-like 1 (soggy); dickkopf-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,109,787 - 107,113,932 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,109,791 - 107,113,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,693,253 - 106,697,206 (-)NCBI
ROS_Cfam_1.01107,630,262 - 107,634,229 (-)NCBI
UMICH_Zoey_3.11107,303,172 - 107,307,137 (-)NCBI
UNSW_CanFamBas_1.01106,945,347 - 106,949,315 (-)NCBI
UU_Cfam_GSD_1.01107,786,470 - 107,790,436 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
DKKL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,109,787 - 107,113,932 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,109,791 - 107,113,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,693,253 - 106,697,206 (-)NCBI
ROS_Cfam_1.01107,630,262 - 107,634,229 (-)NCBI
UMICH_Zoey_3.11107,303,172 - 107,307,137 (-)NCBI
UNSW_CanFamBas_1.01106,945,347 - 106,949,315 (-)NCBI
UU_Cfam_GSD_1.01107,786,470 - 107,790,436 (-)NCBI
DKKL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1949,361,783 - 49,375,116 (+)EnsemblGRCh38hg38GRCh38
GRCh381949,360,520 - 49,375,132 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371949,867,134 - 49,878,373 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,558,854 - 54,570,185 (+)NCBINCBI36hg18NCBI36
Build 341954,558,853 - 54,570,183NCBI
Celera1946,733,898 - 46,745,228 (+)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1946,243,555 - 46,254,943 (+)NCBIHuRef
CHM1_11949,868,966 - 49,880,350 (+)NCBICHM1_1
Dkkl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,856,949 - 44,861,592 (-)NCBIGRCm39mm39
GRCm39 Ensembl744,856,943 - 44,861,571 (-)Ensembl
GRCm38745,207,525 - 45,212,165 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,207,519 - 45,212,147 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,462,895 - 52,467,253 (-)NCBIGRCm37mm9NCBIm37
MGSCv36745,075,567 - 45,079,892 (-)NCBImm8
Celera740,663,416 - 40,667,775 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.19NCBI
Dkkl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2195,694,010 - 95,699,259 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl195,694,010 - 95,699,259 (-)Ensembl
Rnor_6.01101,205,426 - 101,210,675 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,205,426 - 101,210,675 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,270,284 - 102,275,533 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,684,794 - 95,690,043 (-)NCBIRGSC3.4rn4RGSC3.4
Celera189,952,293 - 89,957,542 (-)NCBICelera
Cytogenetic Map1q22NCBI
Dkkl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,445,149 - 1,449,004 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,445,082 - 1,449,167 (-)NCBIChiLan1.0ChiLan1.0
DKKL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11955,300,173 - 55,313,690 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,301,955 - 55,313,690 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01946,375,301 - 46,389,822 (+)NCBIMhudiblu_PPA_v0panPan3
Dkkl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,638,880 - 21,645,597 (+)NCBI
SpeTri2.0NW_0049366643,257,744 - 3,263,787 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DKKL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,463,759 - 54,468,361 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,462,367 - 54,468,363 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DKKL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,544,459 - 42,555,653 (+)NCBI
ChlSab1.1 Ensembl642,547,593 - 42,555,566 (+)Ensembl
Vero_WHO_p1.0NW_02366607322,470,364 - 22,482,443 (+)NCBI
Dkkl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248324,816,383 - 4,820,082 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8
Low 2 10 1 6 1 12 7 3
Below cutoff 3 5 12 6 5 6 5 3 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003638821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005616315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038467551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038467552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038467553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038528258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038592554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038592555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038592556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038656343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038656344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038656345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_859219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000005919   ⟹   ENSCAFP00000005483
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1107,109,791 - 107,113,811 (-)Ensembl
RefSeq Acc Id: XM_003638821   ⟹   XP_003638869
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11107,109,787 - 107,113,927 (-)NCBI
Dog10K_Boxer_Tasha1106,693,253 - 106,697,197 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005616315   ⟹   XP_005616372
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11107,109,787 - 107,113,927 (-)NCBI
Dog10K_Boxer_Tasha1106,693,253 - 106,697,206 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038467551   ⟹   XP_038323479
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11107,303,172 - 107,307,128 (-)NCBI
RefSeq Acc Id: XM_038467552   ⟹   XP_038323480
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11107,303,172 - 107,307,137 (-)NCBI
RefSeq Acc Id: XM_038467553   ⟹   XP_038323481
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11107,303,172 - 107,307,128 (-)NCBI
RefSeq Acc Id: XM_038528256   ⟹   XP_038384184
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01107,786,470 - 107,790,427 (-)NCBI
RefSeq Acc Id: XM_038528257   ⟹   XP_038384185
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01107,786,470 - 107,790,436 (-)NCBI
RefSeq Acc Id: XM_038528258   ⟹   XP_038384186
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01107,786,470 - 107,790,427 (-)NCBI
RefSeq Acc Id: XM_038592554   ⟹   XP_038448482
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01106,945,347 - 106,949,306 (-)NCBI
RefSeq Acc Id: XM_038592555   ⟹   XP_038448483
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01106,945,347 - 106,949,315 (-)NCBI
RefSeq Acc Id: XM_038592556   ⟹   XP_038448484
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01106,945,347 - 106,949,306 (-)NCBI
RefSeq Acc Id: XM_038656343   ⟹   XP_038512271
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01107,630,262 - 107,634,220 (-)NCBI
RefSeq Acc Id: XM_038656344   ⟹   XP_038512272
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01107,630,262 - 107,634,229 (-)NCBI
RefSeq Acc Id: XM_038656345   ⟹   XP_038512273
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01107,630,262 - 107,634,220 (-)NCBI
RefSeq Acc Id: XM_859219   ⟹   XP_864312
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11107,109,787 - 107,113,932 (-)NCBI
Dog10K_Boxer_Tasha1106,693,253 - 106,697,197 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005616372   ⟸   XM_005616315
- Peptide Label: isoform X2
- UniProtKB: E2QYS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_864312   ⟸   XM_859219
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_003638869   ⟸   XM_003638821
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCAFP00000005483   ⟸   ENSCAFT00000005919
RefSeq Acc Id: XP_038323480   ⟸   XM_038467552
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038323481   ⟸   XM_038467553
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038323479   ⟸   XM_038467551
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038448483   ⟸   XM_038592555
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038448484   ⟸   XM_038592556
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038448482   ⟸   XM_038592554
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038512272   ⟸   XM_038656344
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038512273   ⟸   XM_038656345
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038512271   ⟸   XM_038656343
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038384185   ⟸   XM_038528257
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038384186   ⟸   XM_038528258
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038384184   ⟸   XM_038528256
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003681 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000005483 ENTREZGENE
NCBI Gene DKKL1 ENTREZGENE
UniProt E2QYS1 ENTREZGENE
VGNC ID VGNC:39973 ENTREZGENE