Advanced Search (OLGA)

Gene: RAB5B (RAB5B, member RAS oncogene family) Canis lupus familiaris

Analyze

Symbol:

RAB5B

Name:

RAB5B, member RAS oncogene family

RGD ID:

12314467

Description:

ENCODES a protein that exhibits GDP binding (inferred); GTP binding (inferred); GTP-dependent protein binding (inferred); INVOLVED IN endosome organization (ortholog); regulation of endocytosis (ortholog); ASSOCIATED WITH Pulmonary Surfactant Metabolism Dysfunction 1 (ortholog); FOUND IN synaptic vesicle membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ras-related protein Rab-5B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	307,693 - 325,766 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	320,366 - 323,844 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	369,626 - 387,933 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	314,513 - 332,609 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	314,547 - 332,362 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	292,317 - 310,622 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	535,089 - 553,175 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	659,367 - 677,675 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Pulmonary Surfactant Metabolism Dysfunction 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antigen processing and presentation (IEA)

endocytosis (IBA)

endosome organization (IEA,ISO)

intracellular protein transport (IBA)

plasma membrane to endosome transport (IEA)

regulation of endocytosis (IEA,ISO)

Cellular Component

early endosome (IBA)

endocytic vesicle (IBA,IEA)

endomembrane system (IBA,IEA)

endosome (IEA)

extracellular exosome (IEA)

intracellular membrane-bounded organelle (IEA)

plasma membrane (IBA)

synaptic vesicle membrane (ISO)

Molecular Function

GDP binding (IEA)

GTP binding (IEA)

GTP-dependent protein binding (IEA)

GTPase activity (IBA,IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

RAB5B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	307,693 - 325,766 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	320,366 - 323,844 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	369,626 - 387,933 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	314,513 - 332,609 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	314,547 - 332,362 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	292,317 - 310,622 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	535,089 - 553,175 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	659,367 - 677,675 (+)	NCBI		UU_Cfam_GSD_1.0

RAB5B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	55,973,949 - 55,996,683 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	55,973,913 - 55,996,683 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	56,367,733 - 56,390,467 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	54,654,129 - 54,674,757 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	54,654,128 - 54,674,753	NCBI
Celera	12	56,020,546 - 56,041,174 (+)	NCBI		Celera
Cytogenetic Map	12	q13.2	NCBI
HuRef	12	53,406,584 - 53,429,353 (+)	NCBI		HuRef
CHM1_1	12	56,334,808 - 56,357,578 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	55,941,012 - 55,963,746 (+)	NCBI		T2T-CHM13v2.0

Rab5b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	128,511,980 - 128,532,160 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	128,513,044 - 128,532,133 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	128,677,170 - 128,696,284 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	128,677,175 - 128,696,264 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	128,114,235 - 128,133,324 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	128,080,826 - 128,099,213 (-)	NCBI		MGSCv36	mm8
Celera	10	131,069,284 - 131,088,400 (-)	NCBI		Celera
Cytogenetic Map	10	D3	NCBI
cM Map	10	77.13	NCBI

Rab5b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	1,693,971 - 1,712,936 (-)	NCBI		GRCr8
mRatBN7.2	7	1,109,449 - 1,128,348 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	1,109,454 - 1,128,268 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	3,872,624 - 3,891,374 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,748,296 - 5,767,046 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	6,045,368 - 6,063,861 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	3,104,530 - 3,123,384 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	3,104,551 - 3,123,297 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	3,077,228 - 3,096,075 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	1,979,776 - 1,998,540 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	1,980,577 - 1,998,878 (-)	NCBI
Celera	7	979,663 - 998,427 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

Rab5b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	3,576,247 - 3,580,192 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	3,563,363 - 3,582,620 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB5B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	38,334,994 - 38,355,711 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	38,329,770 - 38,352,483 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	32,916,314 - 32,939,047 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	33,168,248 - 33,188,865 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	33,168,254 - 33,188,676 (-)	Ensembl	panpan1.1		panPan2

Rab5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	58,461,972 - 58,483,266 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	386,833 - 410,192 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	386,958 - 408,265 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB5B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	21,387,250 - 21,389,745 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	21,373,333 - 21,392,729 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RAB5B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	51,912,417 - 51,933,862 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	51,926,016 - 51,931,356 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	194,051,372 - 194,074,986 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab5b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	12,059,503 - 12,066,296 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624802	12,058,916 - 12,065,177 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RAB5B
142 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038487731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038549619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038613590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038678954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_531627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000000142 ⟹ ENSCAFP00000000123

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	10	320,366 - 323,538 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000087717 ⟹ ENSCAFP00000065532

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	10	320,366 - 323,844 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845010569 ⟹ ENSCAFP00845008229

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	10	314,547 - 332,362 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845010583 ⟹ ENSCAFP00845008241

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	10	314,575 - 332,361 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845010588 ⟹ ENSCAFP00845008246

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	10	314,575 - 332,361 (+)	Ensembl

RefSeq Acc Id:

XM_038487731 ⟹ XP_038343659

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	10	292,317 - 310,622 (+)	NCBI

RefSeq Acc Id:

XM_038549619 ⟹ XP_038405547

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	10	659,367 - 677,675 (+)	NCBI

RefSeq Acc Id:

XM_038613590 ⟹ XP_038469518

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	10	535,089 - 553,175 (+)	NCBI

RefSeq Acc Id:

XM_038678954 ⟹ XP_038534882

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	10	314,513 - 332,609 (+)	NCBI

RefSeq Acc Id:

XM_531627 ⟹ XP_531627

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	10	307,693 - 325,766 (+)	NCBI
Dog10K_Boxer_Tasha	10	369,626 - 387,933 (+)	NCBI

Sequence:

show sequence

GGGTAATCGTGCTACTGGCTGGGGCCCCCGCCCCAGGACGAGGAGGAGGAGGAGGGGCAGGAGG
GTTTGGTTGAGCTGCAGCTGTTTGTCTGTTCGACACAGGCTTGGGCCCGGCGGGGGAGACGGAG
CCCCAGGATTGTTGAAGCCTGAAGTCCCCTCCCCTTCCCCCCTCCCCCCTTTGCCGCTTTGTGG
CATCCCCCTCCCTCTACCCTTCCCCATTCTGATAATCTAGCCATGACTAGCAGAAGCACAGCCA
GGCCCAATGGGCAGCCCCAGGCCAGCAAAATATGCCAGTTCAAATTGGTCCTGCTGGGTGAATC
TGCAGTGGGGAAGTCTAGCCTGGTATTACGTTTTGTCAAAGGGCAGTTTCATGAGTACCAGGAG
AGCACCATTGGAGCGGCCTTCCTCACCCAGTCTGTTTGTCTAGATGACACAACAGTCAAGTTTG
AGATCTGGGACACAGCTGGGCAGGAGCGATACCATAGCTTGGCCCCCATGTACTACAGGGGTGC
CCAAGCTGCCATTGTGGTTTATGACATTACTAATCAGGAAACCTTCGCTCGAGCAAAGACCTGG
GTAAAGGAACTACAGCGACAGGCCAGTCCTAGCATCGTTATTGCCCTGGCGGGGAACAAAGCTG
ATCTGGCCAATAAGCGCATGGTGGAGTATGAAGAGGCCCAGGCGTATGCAGATGACAACAGCTT
ATTGTTTATGGAGACTTCAGCCAAGACAGCTATGAACGTGAACGATCTCTTCCTGGCTATAGCT
AAGAAGTTGCCAAAGAGTGAACCCCAGAATCTGGGGGGTGCAGCAGGCCGAAGCCGGGGTGTGG
ATCTCCATGAGCAGTCCCAGCAGAACAAGAGCCAGTGTTGTAGCAACTGAGGGGGTGGCTAGCA
GCAAACAATTATGGAGCTAGCACGAGAGCTAAGAAATAACCTCCATCCCCACCCCTCAGCACAC
AGCCCCTATGGTAACAGCACACTGAGCCCTGGCTCCCAAGGGCTGCCTCCTGACAGCTCCATCA
TGGCACTTTTTAACGCTTCAGCAACCAACACCAGGCAGCTGTTGCCACTGGCCTCCTACCCCTA
CTCGGGTTTGGGGGTCAGATCCCCCAGGACTTACCTTCCAAAACAAACTTTCTTCACTTTGTAT
TATAGGTGCAAGACAGTGACCTACTTATCTTTCCTCCTCCTCCTCCTCATTTTTTTCAGAAAAC
ATTTTTTGTCTCCTGCCCCTTCCCCTTCTGCTTTTGGTCAATCCCTGTTCTTGATCCCCTTTTC
CTCCTCTCCCCAGGATGGAGAAGGTGGTGAACCCAGGAACTGAGGAAGGATGTTTCCAGTTCAG
TCACATTAAGGGCCCTGGGGCGGGGAAGGGGAGTAAGCCTCAGAGCAGGAGGGAGTAAGGAAAC
AGTTCCTTTTTGTTTCTATTTGGTTGGAGTCTCTCATATTTGAAAACACTGCAGCCTCCATGAG
TTGGCCTTGTGGAGGGTGTTTCCAGGTAGAGGTGAGAATGGGAAGGCAAACTCTTGGGTACCAG
GTAGGAGTTGTTGTTGGCTAAATGGGCAGAGGTGGAGGAGGTGGAGATGCAGTGTACCTATGGC
TCTGGAACTGTTCCAAGGCCTAATATCCCCCTCACCCAGCCTCGGTAGCTCCTCCCCCATAGTG
GGGGAGACTCTGGACCCCAGAGTCCTCCAAAGAATCTTCACTGGTTGCCTGCATCTTTGGCTCT
GCTGTGATCTAATTAGAGGAGGGACCAGTTTCTGATACCCATCCTCTGATTTATACATATGCAT
TTTTTTTTTCCTCTGGCCTTTAGATGGCCTCAGCCCCAGCCACTCTATTTCCCTGCAGTTTGCA
CTTTAATTGGTGGTAGTTCAGTTGGGATACTTGTTTTATGGGGGTTTTGATTGATTTACCTGCC
CTCTCACCTTTTTAATTAAATGAAAGCCAAGGTAGTATATATATGAGGTTTTGGGAGGGGCTAA
GAGAACAGAACCAGTGGCAGCTACTCAAGCCCAGTCTCCGCTGCTTGCTTCCTCCAACTCTGAT
TCTTAACCTATATTCTTGCCAACCTAGCTCTCAAGAGTATAGGTTTGCCTTTCCTGGGGAATTA
ACTGAGCAACTGGAGATAGGATAGCCTAGGCCATGTATGGGAGTAAAGAGGGGTCAGGAAAGAG
AGAGGAGTTTTCTCTCCTTTCCTAAGGTTCACATTCAATTTGATCTACCCATTACCATGTCTTT
TCTACTTCCCTGTAAATAGATATGATCTTTATTCCCACTGTACAGTCTGTTCTGTCCTCCACCT
CCCATCAGGCCCTAGATCTTTTCTCCTTTGTTAGTACCTTCGGTTTAGTTCCTCCATCCTTATC
CTCAGACCCACCCCCAGCCAGTGGTTTAATCCACATACCACTAAAGGCTAATACCACAGAGGCC
TACTTGTGGCTCCCTCATATGGTAACACCTGTTCCTGTGGACAGGAAACAACAGCTGACACTGA
AGGTCCATCACAACTGTCTCACATTACCCGAGGACACATCCCTCATCAGGTATTTTAGGATGTC
TCTGAGAGCCATCAAGGCAAGAGAGAACTCTAAACTCCTTCTTGGTTCCAGCCCAGAGTTTGGG
GAAAATTGGAGGAAGAAGTAAGATAGGAAAAGTCATGGTGACCTAGGATTGGAACCTTTCTGCC
CTTTGGTTTACAGACTGCCTTCTGTCCCAGAGCAGCTGAGAGATCCTTGGAGCTGAGACTCTGA
AGGACCCAGCTTAGGTTCTTCCACTTAGGACTCATTTCCCTTTCTTTTCCAGGGGCAGCCTTAG
TTCCCGTGGCCCTGAAACACACATATATTTTCCCCTTCCTTTCCCAGCACCCACCAGCCCCACA
AAGCACCCAGTGCATCCTTATAAGTGGAAGAACTAAGATAGCGCTCTTAAATTCCTTAGAAATG
AAGTTTTTTTGTTTTGTTTTTGTTTTTGTTTTTCTCAGTATCTTTCCCCATGGAACAGGAGTGA
AAGTATTTCATTGCCTTGGGGCTGGGAAAGCATTTCTCCAGCCTTCTTCTCCCCTCCCCAGCCC
CCTTAGGAACAGGATTGGCCTCAGCTTCTGGGCCTATCTGCTGCCTTCCTTCGATTTCCTACCA
GCTCTTTTGCTTTCCTTTGAGCTCTCTCGGGCTTGGGGATCTTAGTTTTTATTTCCCAGCTCTT
CTTCCTCTTTTTTTTTTTTTTTTTCTTCTGATCAGTTTTTTTTTAGGGGGGGTGTCCTTTTTTT
TCTTCTAAGAAAGCATTTGCCTTTTTCCCCTTTTCTTCCTCTCCCAACGTAACAATCGTGGTAA
CAGAATGCGACTGCTGATTTACCGATGTATTTAATGTAAGTAAAAAAGGAAAAAAAAAAAAGAA
AAAAAAAGTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_038343659	(Get FASTA)	NCBI Sequence Viewer
	XP_038405547	(Get FASTA)	NCBI Sequence Viewer
	XP_038469518	(Get FASTA)	NCBI Sequence Viewer
	XP_038534882	(Get FASTA)	NCBI Sequence Viewer
	XP_531627	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000000123.3
	ENSCAFP00000065532.1
	ENSCAFP00000068752.1
	ENSCAFP00030025712.1
	ENSCAFP00030025741.1
	ENSCAFP00040006602.1
	ENSCAFP00040006612.1
	ENSCAFP00845008229.1
	ENSCAFP00845008241
	ENSCAFP00845008241.1
	ENSCAFP00845008246.1

RefSeq Acc Id:	XP_531627 ⟸ XM_531627
- UniProtKB:	A0A8C0LQ91 (UniProtKB/TrEMBL), A0A8C0Q6S0 (UniProtKB/TrEMBL), A0A8I3RUF7 (UniProtKB/TrEMBL), A0A8I3RUF5 (UniProtKB/TrEMBL), A0A8P0PHU0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGA AGRSRGVDLHEQSQQNKSQCCSN hide sequence

Ensembl Acc Id:

ENSCAFP00000065532 ⟸ ENSCAFT00000087717

Ensembl Acc Id:

ENSCAFP00000000123 ⟸ ENSCAFT00000000142

RefSeq Acc Id:

XP_038343659 ⟸ XM_038487731

RefSeq Acc Id:

XP_038469518 ⟸ XM_038613590

RefSeq Acc Id:	XP_038534882 ⟸ XM_038678954
- UniProtKB:	A0A8C0LQ91 (UniProtKB/TrEMBL), A0A8C0Q6S0 (UniProtKB/TrEMBL), A0A8I3RUF7 (UniProtKB/TrEMBL), A0A8I3RUF5 (UniProtKB/TrEMBL), A0A8P0PHU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038405547 ⟸ XM_038549619
- UniProtKB:	A0A8C0LQ91 (UniProtKB/TrEMBL), A0A8C0Q6S0 (UniProtKB/TrEMBL), A0A8I3RUF5 (UniProtKB/TrEMBL), A0A8I3RUF7 (UniProtKB/TrEMBL), A0A8P0PHU0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845008229 ⟸ ENSCAFT00845010569

Ensembl Acc Id:

ENSCAFP00845008241 ⟸ ENSCAFT00845010583

Ensembl Acc Id:

ENSCAFP00845008246 ⟸ ENSCAFT00845010588

Promoters

RGD ID:

13684864

Promoter ID:

EPDNEW_C2931

Type:

multiple initiation site

Name:

RAB5B_1

Description:

RAB5B, member RAS oncogene family

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	10	320,330 - 320,390	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000000087	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030015996	UniProtKB/TrEMBL
	ENSCAFG00040003968	UniProtKB/TrEMBL
	ENSCAFG00845005969	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000000142.5	UniProtKB/TrEMBL
	ENSCAFT00000087717.2	UniProtKB/TrEMBL
	ENSCAFT00000095257.1	UniProtKB/TrEMBL
	ENSCAFT00030029502.1	UniProtKB/TrEMBL
	ENSCAFT00030029540.1	UniProtKB/TrEMBL
	ENSCAFT00040007572.1	UniProtKB/TrEMBL
	ENSCAFT00040007582.1	UniProtKB/TrEMBL
	ENSCAFT00845010569.1	UniProtKB/TrEMBL
	ENSCAFT00845010583	ENTREZGENE
	ENSCAFT00845010583.1	UniProtKB/TrEMBL
	ENSCAFT00845010588.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/TrEMBL
KEGG Report	cfa:474394	UniProtKB/TrEMBL
NCBI Gene	RAB5B	ENTREZGENE
PANTHER	PTHR47978	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
SMART	RAB	UniProtKB/TrEMBL
	RAN	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8C0LQ91	ENTREZGENE
	A0A8C0Q6S0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QC84_CANLF	UniProtKB/TrEMBL
	A0A8I3MVT3_CANLF	UniProtKB/TrEMBL
	A0A8I3RUF5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3RUF7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PHU0	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:45292	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar