HERC1 (HECT and RLD domain containing E3 ubiquitin protein ligase family member 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: HERC1 (HECT and RLD domain containing E3 ubiquitin protein ligase family member 1) Canis lupus familiaris
Analyze
Symbol: HERC1
Name: HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
RGD ID: 12313553
Description: ENCODES a protein that exhibits ubiquitin-protein transferase activity (inferred); INVOLVED IN autophagy (ortholog); brain development (ortholog); cerebellar Purkinje cell differentiation (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1; probable E3 ubiquitin-protein ligase HERC1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13028,195,296 - 28,379,343 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3028,195,673 - 28,379,444 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3028,116,109 - 28,299,721 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03028,369,387 - 28,553,435 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3028,369,389 - 28,553,406 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13028,306,763 - 28,490,386 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03028,368,982 - 28,552,605 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03028,607,198 - 28,791,048 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
HERC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13028,195,296 - 28,379,343 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3028,195,673 - 28,379,444 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3028,116,109 - 28,299,721 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03028,369,387 - 28,553,435 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3028,369,389 - 28,553,406 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13028,306,763 - 28,490,386 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03028,368,982 - 28,552,605 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03028,607,198 - 28,791,048 (-)NCBIUU_Cfam_GSD_1.0
HERC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381563,608,618 - 63,833,948 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1563,608,618 - 63,833,948 (-)EnsemblGRCh38hg38GRCh38
GRCh371563,900,817 - 64,126,147 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361561,687,870 - 61,913,200 (-)NCBINCBI36Build 36hg18NCBI36
Build 341561,687,870 - 61,913,141NCBI
Celera1540,780,251 - 41,005,485 (-)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1540,725,245 - 40,950,861 (-)NCBIHuRef
CHM1_11564,020,042 - 64,245,382 (-)NCBICHM1_1
T2T-CHM13v2.01561,415,858 - 61,641,183 (-)NCBIT2T-CHM13v2.0
Herc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39966,257,694 - 66,416,057 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl966,257,732 - 66,416,057 (+)EnsemblGRCm39 Ensembl
GRCm38966,350,412 - 66,508,775 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl966,350,450 - 66,508,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv37966,198,257 - 66,356,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36966,148,456 - 66,309,055 (+)NCBIMGSCv36mm8
Celera963,584,587 - 63,742,741 (+)NCBICelera
Cytogenetic Map9CNCBI
cM Map935.86NCBI
Herc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8875,796,347 - 75,965,347 (+)NCBIGRCr8
mRatBN7.2866,857,169 - 67,070,318 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl866,856,935 - 67,070,312 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0872,029,550 - 72,198,363 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl872,029,489 - 72,198,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0871,696,247 - 71,866,080 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4870,642,670 - 70,811,822 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1870,685,007 - 70,830,421 (+)NCBI
Celera866,287,307 - 66,455,898 (+)NCBICelera
Cytogenetic Map8q24NCBI
Herc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545011,525,246 - 11,719,992 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545011,525,245 - 11,719,992 (+)NCBIChiLan1.0ChiLan1.0
HERC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21652,856,563 - 53,087,506 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11557,032,688 - 57,262,796 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01542,555,131 - 42,785,228 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11560,848,030 - 61,017,273 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1560,848,493 - 61,017,244 (-)Ensemblpanpan1.1panPan2
Herc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640106,294,164 - 106,482,872 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647124,141,928 - 24,330,967 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647124,142,227 - 24,330,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HERC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1108,205,580 - 108,403,862 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11108,206,172 - 108,404,149 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21119,362,017 - 119,560,531 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HERC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12619,713,780 - 19,930,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2619,713,617 - 19,930,937 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048121,468,297 - 121,687,435 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Herc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247818,745,780 - 8,907,701 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247818,694,044 - 8,907,701 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HERC1
1204 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038442568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_544717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000026962   ⟹   ENSCAFP00000025065
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3028,195,673 - 28,379,444 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845038095   ⟹   ENSCAFP00845029844
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3028,369,389 - 28,553,406 (-)Ensembl
RefSeq Acc Id: XM_038442568   ⟹   XP_038298496
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03028,369,387 - 28,553,435 (-)NCBI
RefSeq Acc Id: XM_038442569   ⟹   XP_038298497
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03028,369,387 - 28,553,428 (-)NCBI
RefSeq Acc Id: XM_038442570   ⟹   XP_038298498
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03028,369,387 - 28,553,435 (-)NCBI
RefSeq Acc Id: XM_038442571   ⟹   XP_038298499
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03028,369,387 - 28,553,435 (-)NCBI
RefSeq Acc Id: XM_038442572   ⟹   XP_038298500
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03028,369,387 - 28,553,435 (-)NCBI
RefSeq Acc Id: XM_038442573   ⟹   XP_038298501
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03028,369,387 - 28,553,435 (-)NCBI
RefSeq Acc Id: XM_038442574   ⟹   XP_038298502
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03028,369,387 - 28,553,435 (-)NCBI
RefSeq Acc Id: XM_038442575   ⟹   XP_038298503
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03028,369,387 - 28,553,435 (-)NCBI
RefSeq Acc Id: XM_038461050   ⟹   XP_038316978
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3028,116,109 - 28,299,721 (-)NCBI
RefSeq Acc Id: XM_038461051   ⟹   XP_038316979
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3028,116,109 - 28,299,714 (-)NCBI
RefSeq Acc Id: XM_038461052   ⟹   XP_038316980
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3028,116,109 - 28,299,721 (-)NCBI
RefSeq Acc Id: XM_038461053   ⟹   XP_038316981
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3028,116,109 - 28,299,721 (-)NCBI
RefSeq Acc Id: XM_038461054   ⟹   XP_038316982
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3028,116,109 - 28,299,721 (-)NCBI
RefSeq Acc Id: XM_038461055   ⟹   XP_038316983
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3028,116,109 - 28,299,721 (-)NCBI
RefSeq Acc Id: XM_038461056   ⟹   XP_038316984
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3028,116,109 - 28,299,721 (-)NCBI
RefSeq Acc Id: XM_038461057   ⟹   XP_038316985
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3028,116,109 - 28,299,721 (-)NCBI
RefSeq Acc Id: XM_038517020   ⟹   XP_038372948
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13028,306,763 - 28,490,386 (-)NCBI
RefSeq Acc Id: XM_038580634   ⟹   XP_038436562
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03028,607,198 - 28,791,048 (-)NCBI
RefSeq Acc Id: XM_038580635   ⟹   XP_038436563
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03028,607,198 - 28,791,041 (-)NCBI
RefSeq Acc Id: XM_038580636   ⟹   XP_038436564
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03028,607,198 - 28,791,048 (-)NCBI
RefSeq Acc Id: XM_038580637   ⟹   XP_038436565
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03028,607,198 - 28,791,048 (-)NCBI
RefSeq Acc Id: XM_038580638   ⟹   XP_038436566
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03028,607,198 - 28,791,048 (-)NCBI
RefSeq Acc Id: XM_038580639   ⟹   XP_038436567
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03028,607,198 - 28,791,048 (-)NCBI
RefSeq Acc Id: XM_038580640   ⟹   XP_038436568
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03028,607,198 - 28,791,048 (-)NCBI
RefSeq Acc Id: XM_038580641   ⟹   XP_038436569
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03028,607,198 - 28,791,048 (-)NCBI
RefSeq Acc Id: XM_038644944   ⟹   XP_038500872
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03028,368,982 - 28,552,605 (-)NCBI
RefSeq Acc Id: XM_038644945   ⟹   XP_038500873
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03028,368,982 - 28,552,598 (-)NCBI
RefSeq Acc Id: XM_038644946   ⟹   XP_038500874
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03028,368,982 - 28,552,605 (-)NCBI
RefSeq Acc Id: XM_038644947   ⟹   XP_038500875
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03028,368,982 - 28,552,605 (-)NCBI
RefSeq Acc Id: XM_038644948   ⟹   XP_038500876
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03028,368,982 - 28,552,605 (-)NCBI
RefSeq Acc Id: XM_038644949   ⟹   XP_038500877
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03028,368,982 - 28,552,605 (-)NCBI
RefSeq Acc Id: XM_038644950   ⟹   XP_038500878
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03028,368,982 - 28,552,605 (-)NCBI
RefSeq Acc Id: XM_038644951   ⟹   XP_038500879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03028,368,982 - 28,552,605 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038298496 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298497 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298498 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298499 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298500 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298502 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298503 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316978 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316979 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316980 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316981 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316982 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316983 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316984 (Get FASTA)   NCBI Sequence Viewer  
  XP_038316985 (Get FASTA)   NCBI Sequence Viewer  
  XP_038372948 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436562 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436563 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436564 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436565 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436566 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436567 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436568 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436569 (Get FASTA)   NCBI Sequence Viewer  
  XP_038500872 (Get FASTA)   NCBI Sequence Viewer  
  XP_038500873 (Get FASTA)   NCBI Sequence Viewer  
  XP_038500874 (Get FASTA)   NCBI Sequence Viewer  
  XP_038500875 (Get FASTA)   NCBI Sequence Viewer  
  XP_038500876 (Get FASTA)   NCBI Sequence Viewer  
  XP_038500877 (Get FASTA)   NCBI Sequence Viewer  
  XP_038500878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038500879 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000025065.6
  ENSCAFP00030031348.1
  ENSCAFP00040038653.1
  ENSCAFP00040038740.1
  ENSCAFP00040038933.1
  ENSCAFP00845029844
  ENSCAFP00845029844.1
Ensembl Acc Id: ENSCAFP00000025065   ⟸   ENSCAFT00000026962
RefSeq Acc Id: XP_038372948   ⟸   XM_038517020
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038500874   ⟸   XM_038644946
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038500877   ⟸   XM_038644949
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038500879   ⟸   XM_038644951
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038500876   ⟸   XM_038644948
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038500875   ⟸   XM_038644947
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038500878   ⟸   XM_038644950
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038500872   ⟸   XM_038644944
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038500873   ⟸   XM_038644945
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038298498   ⟸   XM_038442570
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298501   ⟸   XM_038442573
- Peptide Label: isoform X5
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298503   ⟸   XM_038442575
- Peptide Label: isoform X7
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298500   ⟸   XM_038442572
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298499   ⟸   XM_038442571
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298502   ⟸   XM_038442574
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298496   ⟸   XM_038442568
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298497   ⟸   XM_038442569
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316980   ⟸   XM_038461052
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316983   ⟸   XM_038461055
- Peptide Label: isoform X5
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316985   ⟸   XM_038461057
- Peptide Label: isoform X7
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316982   ⟸   XM_038461054
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316981   ⟸   XM_038461053
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316984   ⟸   XM_038461056
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316978   ⟸   XM_038461050
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038316979   ⟸   XM_038461051
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436564   ⟸   XM_038580636
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436567   ⟸   XM_038580639
- Peptide Label: isoform X5
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436569   ⟸   XM_038580641
- Peptide Label: isoform X7
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436566   ⟸   XM_038580638
- Peptide Label: isoform X4
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436565   ⟸   XM_038580637
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436568   ⟸   XM_038580640
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436562   ⟸   XM_038580634
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436563   ⟸   XM_038580635
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NUY8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845029844   ⟸   ENSCAFT00845038095
Protein Domains
B30.2/SPRY   HECT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017011 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030019573 UniProtKB/TrEMBL
  ENSCAFG00040023448 UniProtKB/TrEMBL
  ENSCAFG00845021555 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000026962.6 UniProtKB/TrEMBL
  ENSCAFT00030035942.1 UniProtKB/TrEMBL
  ENSCAFT00040044273.1 UniProtKB/TrEMBL
  ENSCAFT00040044370.1 UniProtKB/TrEMBL
  ENSCAFT00040044578.1 UniProtKB/TrEMBL
  ENSCAFT00845038095 ENTREZGENE
  ENSCAFT00845038095.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.130.10.30 UniProtKB/TrEMBL
  2.60.120.920 UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domain UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domain UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domains UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  HECT_dom UniProtKB/TrEMBL
  Hect_E3_ubiquitin_ligase UniProtKB/TrEMBL
  RCC1/BLIP-II UniProtKB/TrEMBL
  Reg_chr_condens UniProtKB/TrEMBL
  Signaling_Regulatory_Domain UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  SPRY_HERC1 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene HERC1 ENTREZGENE
PANTHER BTK-BINDING PROTEIN-RELATED UniProtKB/TrEMBL
  HECT AND RLD DOMAIN CONTAINING E3 UBIQUITIN PROTEIN LIGASE FAMILY MEMBER 1 UniProtKB/TrEMBL
Pfam HECT UniProtKB/TrEMBL
  RCC1 UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS RCCNDNSATION UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  HECT UniProtKB/TrEMBL
  RCC1_2 UniProtKB/TrEMBL
  RCC1_3 UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART HECTc UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  SSF50985 UniProtKB/TrEMBL
  SSF56204 UniProtKB/TrEMBL
UniProt A0A8C0NUY8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TM42_CANLF UniProtKB/TrEMBL
  A0A8C0TNM9_CANLF UniProtKB/TrEMBL
  A0A8C0TRR8_CANLF UniProtKB/TrEMBL
  A0A8I3PNJ7_CANLF UniProtKB/TrEMBL
  A0A8P0NII7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:41661 ENTREZGENE