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Gene: Herc1 (HECT and RLD domain containing E3 ubiquitin protein ligase family member 1) Ictidomys tridecemlineatus

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Symbol:

Herc1

Name:

HECT and RLD domain containing E3 ubiquitin protein ligase family member 1

RGD ID:

12448305

Description:

ENCODES a protein that exhibits ubiquitin-protein transferase activity (inferred); INVOLVED IN autophagy (ortholog); brain development (ortholog); cerebellar Purkinje cell differentiation (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X1; HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X2; HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X3; HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X4; probable E3 ubiquitin-protein ligase HERC1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,872 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	24,141,928 - 24,330,967 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	24,142,227 - 24,330,966 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

Bloom syndrome (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

hypertrophic cardiomyopathy (ISO)

intellectual disability (ISO)

Macrocephaly, Dysmorphic Facies, and Psychomotor Retardation (ISO)

Megalencephaly with Thick Corpus Callosum, Cerebellar Atrophy, and Intellectual Disability (ISO)

nemaline myopathy 6 (ISO)

Neurodevelopmental Disorders (ISO)

primary ovarian insufficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagy (IEA,ISO)

brain development (IEA,ISO)

cerebellar Purkinje cell differentiation (IEA,ISO)

corpus callosum development (IEA,ISO)

negative regulation of autophagy (IEA,ISO)

neuromuscular process controlling balance (IEA,ISO)

neuron projection development (IEA,ISO)

Molecular Function

ubiquitin-protein transferase activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Herc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,872 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	24,141,928 - 24,330,967 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	24,142,227 - 24,330,966 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HERC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	63,608,618 - 63,833,948 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	63,608,618 - 63,833,948 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	63,900,817 - 64,126,147 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	61,687,870 - 61,913,200 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	61,687,870 - 61,913,141	NCBI
Celera	15	40,780,251 - 41,005,485 (-)	NCBI		Celera
Cytogenetic Map	15	q22.31	NCBI
HuRef	15	40,725,245 - 40,950,861 (-)	NCBI		HuRef
CHM1_1	15	64,020,042 - 64,245,382 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	61,415,858 - 61,641,183 (-)	NCBI		T2T-CHM13v2.0

Herc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	66,257,694 - 66,416,057 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	66,257,732 - 66,416,057 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	66,350,412 - 66,508,775 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	66,350,450 - 66,508,775 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	66,198,257 - 66,356,582 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	66,148,456 - 66,309,055 (+)	NCBI		MGSCv36	mm8
Celera	9	63,584,587 - 63,742,741 (+)	NCBI		Celera
Cytogenetic Map	9	C	NCBI
cM Map	9	35.86	NCBI

Herc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	75,796,347 - 75,965,347 (+)	NCBI		GRCr8
mRatBN7.2	8	66,857,169 - 67,070,318 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	66,856,935 - 67,070,312 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	72,029,550 - 72,198,363 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	72,029,489 - 72,198,358 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	71,696,247 - 71,866,080 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	70,642,670 - 70,811,822 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	70,685,007 - 70,830,421 (+)	NCBI
Celera	8	66,287,307 - 66,455,898 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

Herc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	11,525,246 - 11,719,992 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	11,525,245 - 11,719,992 (+)	NCBI	ChiLan1.0	ChiLan1.0

HERC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	52,856,563 - 53,087,506 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	57,032,688 - 57,262,796 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	42,555,131 - 42,785,228 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	60,848,030 - 61,017,273 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	60,848,493 - 61,017,244 (-)	Ensembl	panpan1.1		panPan2

HERC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	28,195,296 - 28,379,343 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	28,195,673 - 28,379,444 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	28,116,109 - 28,299,721 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	28,369,387 - 28,553,435 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	28,369,389 - 28,553,406 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	28,306,763 - 28,490,386 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	28,368,982 - 28,552,605 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	28,607,198 - 28,791,048 (-)	NCBI		UU_Cfam_GSD_1.0

HERC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	108,205,580 - 108,403,862 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	108,206,172 - 108,404,149 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	119,362,017 - 119,560,531 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HERC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	19,713,780 - 19,930,807 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	19,713,617 - 19,930,937 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	121,468,297 - 121,687,435 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Herc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624781	8,745,780 - 8,907,701 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624781	8,694,044 - 8,907,701 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021727300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000016079 ⟹ ENSSTOP00000014391

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936471	24,141,928 - 24,330,967 (-)	Ensembl

RefSeq Acc Id:

XM_021727300 ⟹ XP_021582975

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	106,294,169 - 106,482,872 (-)	NCBI
SpeTri2.0	NW_004936471	24,142,231 - 24,330,966 (-)	NCBI

Sequence:

show sequence

CCTGCTGCCGCTGCCGCCGCCTCTTACGTCTTTCCCTTTGACAAGTCGCCGCCGCTGCAGCAAA
AATAAAGGACGCGGACACCGCAGCCGCTGCGAGCGGGGCTCGGGTCGCCGGAGCAGCACCCCGC
CCCCGCCAGCTCCGGAGCCGCATACGAACTAATGGCTGAAGAATAAATCAAGATGGCAACTATG
GTTCCACCAGTGAAATTGAAATGGCTAGAACATCTGAACAGCTCCTGGATTACAGAGGACAGTG
AATCTATTGCTACAAGAGAAGGAGTTGCTGTCCTGTATTCTAAACTGGTGAGCAATAAGGAAGT
AGTACCTTTGCCCCAACAAGTTTTTTGCCTCAAAGGACCACAGTTGCCAGACTTTGAACGTGAA
TCTCTTTCAAGTGATGAACAGGACCATTATTTGGATGCCCTTCTTAGCAGCCAACTAGCACTAG
CAAAGATGGTATGTTCGGATTCTCCATTTGCTGGGGCACTTCGAAAACGACTGCTTGTACTACA
GCGTGTCTTTTATGCACTTTCTAATAAATATCATGACAAAGGCAAAGTGAAACAGCAGCAGCAT
TCTCCGGAGAGCAGCTCTGGTTCAGCAGATGTCCATTCCGTTAGTGAACGTCCTCGGTCAAGCA
CTGATGCACTTATAGAAATGGGTGTTCGAACTGGTCTAAGTCTATTATTTGCACTTCTGAGACA
GAGTTGGATGATGCCTGTGTCAGGACCTGGTCTCAGTCTTTGCAATGATGTTATTCATACTGCA
ATTGAAGTTGTGAGCTCTTTGCCACCGTTATCTTTAGCAAATGAAAGCAAGATTCCTCCTATGG
GCTTGGACTGCTTATCACAAGTAACAACATTTCTTAAAGGAGTAACTATTCCGAATTCTGGGGC
AGACACTTTAGGTCGTAGATTAGCTTCTGAGTTACTGCTTGGTTTAGCAGCTCAGCGAGGCTCT
TTGCGGTATCTTCTTGAATGGATAGAAATGGCTTTGGGGGCTTCGGCGGTTGTAAATACCATGG
AGAAAAACAAACTACTATCAAGCCAGGAAGGAATGATCAGCTTTGACTGCTTTATGACTATATT
AATGCAGATGAGGCGTTCTTTGGGCTCGTCTGCTGATCGGAGTCAGTGGAGAGAACCAACCAGA
ACCTCTGATGGCTTGTGCTCACTTTACGAGGCAGCATTATGTCTCTTTGAAGAGGTTTGTAGAA
TGGCTTCTGATTACTCAAGAACATGTGCTAGCCCAGATAGCATTCAGACTGGTGATGCTCCTAT
TGTCTCTGAAACCTGTGAGGTTTATGTTTGGGGGAGCAACAGCAGCCATCAGTTGGTAGAAGGC
ACACAGGAGAAAATATTACAACCCAAACTGGCTCCTAGTTTCTCTGATGCTCAGACTATTGAAG
CTGGACAGTATTGCACTTTTGTCATTTCTACGGATGGTTCTGTCAGAGCTTGTGGTAAAGGCAG
CTATGGGAGACTCGGGCTTGGAGATTCCAATAATCAGTCTACTTTAAAAAAGTTAACGTTTGAG
CCTCACAGGTCCATTAAAAAGGTCTCATCTTCTAAAGGATCTGATGGTCACACTTTAGCTTTTA
CAACAGAAGGAGAAGTCTTCAGTTGGGGAGATGGTGATTATGGAAAACTGGGACATGGAAATAG
TTCAACACAGAAATATCCCAAACTTATTCAGGGACCTCTGCAAGGAAAGGTAGTTGTTTGTGTG
TCAGCTGGATACAGACATAGTGCGGCTGTCACAGAGGATGGAGAATTATATACATGGGGTGAAG
GAGACTTTGGAAGATTAGGTCATGGTGATAGTAATAGCCGTAACATTCCAACATTAGTAAAAGA
CATTAGCAATGTAGGAGAGGTTTCTTGTGGCAGTTCACATACTATTGCTTTATCTAAAGATGGA
AGAACTGTATGGTCTTTTGGAGGAGGAGACAATGGCAAACTTGGCCATGGTGATACCAACAGAG
TGTATAAACCAAAAGTTATTGAAGCTTTACAAGGAATGTTTATTCGTAAAGTTTGTGCTGGGAG
CCAATCTTCACTTTCTTTGACATCAACAGGGCAGGTCTATGCTTGGGGCTGTGGGGCTTGTCTA
GGTTGTGGTTCTTCAGAAGCTACTGCTTTGAGACCCAAGCTTATTGAAGAACTGGCTGCCACAA
GAATAGTTGACATTTCTATTGGAGACAGTCATTGTTTGGCTCTTTCTCATGATAATGAAGTTTA
TGCCTGGGGCAATAACTCAATGGGACAGTGTGGCCAAGGAAATTCCACAGGTCCTATTACTAAA
CCAAAGAAAGTGAGTGGCTTAGATGGCATAGCTATTCAGCAGATCTCAGCTGGAACATCACATA
GCCTGGCATGGACTGCTCTCCCTAGAGACAGACAAGTTGTTGCATGGCATCGACCTTATTGTGT
AGATCTTGAAGAGAGTACCTTCTCACACCTGCGTTCGTTTCTTGAGAGATACTGTGATAAAATA
AACAGTGAGATTCCTCCTCTTCCTTTCCCTTCATCAAGGGAACACCACAATTTCCTCAAGCTGT
GCCTGAAGCTGCTTTCTAATCACCTTGCTCTTGCACTTGCGGGAGGGGTAGCTACCAGCATTCT
TGGGAGGCAAGCAGGTCCACTTCGAAATTTGCTCTTCAGACTGATGGATTCAACTGTTCCAGAT
GAAATCCAAGAGGTGGTAATTGAGACTCTGTCAGTGGGAGCAACCATGCTGTTACCTCCCTTAC
GAGAACGGATGGAATTACTTCATTCTCTTTTACCCCAAGGACCTGATAGATGGGAAAGCTTATC
TAAAGGACAGAGAATGCAACTGGATATCATTTTGACAAGTTTGCAAGATCATACCCATGTAGCC
TCCTTACTTGGCTATAGTTCACCCTCTGATGCTGCTGACCTCTCTTCTGTGTGTACTAGCTATG
GAAACCTGTCAGATCAGTCTTATGGCACTCAGAGCTGCCATCCAGATACCCATTTGGCTGAAAT
TTTGATGAAGACCCTCTTAAGAAATTTAGGATTTTATACAGATCAAGCATTTGGAGAGCTAGAA
AAGAATAGTGATAAATTTCTACTTGGAACATCATCATCAGAGAACAGTCAGCCTGCTCATCTTC
ATGAACTGCTGTGTTCATTACAGAAACAGCTGTTGGCATTTTGCCATATTAATAACATCAGTGA
GAACTCAAGCAGTGTGGCATTGCTTCATAAACATCTTCAGCTCTTGTTGCCTCATGCCACAGAT
ATTTATTCACGTTCTGCAAATTTGCTGAAAGAAAGTCCTTGGAATGGCAGTGTTGGAGATAAGT
TAAGAGATGTGATATACGTCTCAGCTGCAGGCAGCATGCTTTGTCAGATTGTTAATTCCCTGCT
GTTACTCCCAGTGTCAGTGGCTCGTCCTTTATTGAGTTACCTCCTTGATCTTTTGCCACCACTT
GATTGCCTTAATAGACTTCTGCCAGCTGCTGCTCTTTTAGAAGACCAAGAGCTACAGTGGCCTC
TTCATGGAGGGCCGGAAGTAATTGACCCTGCTGGTGTGCCCTTACCTCAGCCAGCTCAGTCTTG
GGTGTGGCTTGTTGATCTGGAAAGGACAATTGCTCTCCTAATTGGGCGGTGTCTTGGTGGCATG
CTTCAGGGCTCCCCCGTGTCTCCAGAGGAACAGGATACTGCATATTGGATGAAAACACCACTTT
TCAGTGATGGTGTAGAAATGGACACACCTCAGTTAGATAAATGTATGAGTTGCCTATTAGAAGT
AGCTCTTTCAGGAAATGAAGAACAGAAGCCTTTTGATTACAAATTGCGTCCTGAAATTGCTGTC
TACGTAGACTTAGCATTGGGTTGTTCTAAAGAGCCTGCCCGAAGCCTTTGGATCAGCATGCAGG
ATTATGCTGTTAGCAAAGATTGGGACAGTGCAACTTTAAGTAATGAGTCACTCTTGGATACTGT
GTCTAGATTTGTTCTTGCAGCACTTCTGAAACACACAAATTTACTTGGTCAAGCATGTGGAGAA
AGCCGATATCAACCTGGTAAAAGCTTATCAGAAGTGTACCGTTGTGTATACAAAGTTCGAAGTC
GTTTACTTGCTTGCAAGAACCTTGAACTTATTCAAACCAGGTCATCATCACGAGACAGATGGAT
CTCAGACAACCAAGACTCTGCAGATGTTGATCCTCAGGAACATTCATTTACCCGGACCATTGAT
GAAGAAGCTGAAATGGAAGAACAGGCTGAGAGAGACAGAGAAGAGGGGCATCCAGAGCCAGAGG
ATGAGGAGGAAGAACGGGAACATGAAGTGATGACAGCTGGCAAAATCTTTCAGTGTTTCCTCTC
AGCCCGTGAAGTAGCTCGTAGCCGAGACCGAGATAGAATGAACAGTGGGGCAGGGTCTGGGGCT
CGAGTTGATGATCCACCTCCTCAGTCTCAGCAAGAGCGAAGGGTCAGCACAGACCTTCCTGAGG
GTCAGGATGTGTATACTGCTGCCTGCAACTCTGTGATCCACCGGTGTGCCCTGTTAATATTAGG
AGTAAGTCCTGTCATTGATGAGCTTCAGAAGCGAAGGGAAGAAGGACAGTTGCAGCAGCCCTCT
ACCAGTGCCTCTGAAGGGGGTGGACTTATGACCAGGAGTGAAAGTCTGACTGCAGAGAGCCGGC
TAGTCCATGCAAGTCCAAATTATAGACTGATCAAATCGAGGAGTGAATCTGATTTGTCGCAGCC
TGAATCAGATGAAGAGAGTTATGCACTGAGTGGCAGACGAAATGTTGATTTGGATTTGGCATCA
TCTCATAGAAAAAGAGGTCCTATGCATAGTCAATTGGAATCCCTGAGCGACTCTTGGGCCCGCC
TGAAACACAGCAGAGACTGGTTGTATAACTCCTCTTACTCCTTCGAGTCTGATTTTGACCTTAC
CAAGTCTTTGGGAGTTCACACATTGATTGAAAATGTTGTAAGCTTTGTGAGTGGAGATGTGGGG
AATGCCCCAGGTTTTAAAGAGCCAGAGGAAAGTATGTCTACAAGTCCTCAGGCCTCCATCATTG
CAATGGAACAACAGCAGTTAAGGGCGGAACTTCGTTTGGAGGCACTTCACCAGATCCTTGTTCT
GTTGTCTGGGATGGAGGAAAAAGGTAGCATCTCACTGGTAGGAAGCAGGTCGAATTCAGGCTTT
CAGTCGTCCACACTGCTCACATCTGTGAGATTACAGTTTCTAGCAGGGTGTTTTGGTTTAGGCA
CTGTTGGACACACAGGAGCCAAAGGAGAAAGTGGCCGCTTGCATCACTATCAGGATGGGATCAG
AGCAGCTAAGAGAAATATTCAAATTGAAATCCAGGTGGCTGTGCATAAGATTTATCAACAGTTG
TCTGCTACCCTGGAGAGAGCCTTGCAAGCAAATAAGCATCACATTGAAGCCCAACAGCGTCTCC
TTTTAGTTACAGTATTTGCCTTGAGCGTTCATTATCAACCTGTGGATGTTTCTTTGGCAATTTC
CACTGGTCTGCTAAATGTATTATCACAGTTATGTGGCACAGACACCATGTTAGGACAGCCCTTG
CAGTTATTGCCAAAGACAGGTGTTTCCCAGCTTAGCACAGCTTTGAAAGTGGCCAGTACAAGGT
TGCTCCAAATTCTAGCAATCACTACAGGGACCTATGCTGATAAACTAAGTCCCAAGATAGTTCA
ATCCTTGTTGGATCTACTTTGTAGTCAGTTGAAGAATTTGTTGTCCCAAACTGGTGTACTACTT
ATGGCCTCTTTTGGAGAAGGGGAAGGAGAAGAGGGTGAAGAAGAAGAAGAAAAAAAAGTTGATT
CCAGTGGAGAAACCGAGAAGAAAGATTTCAGAGCTGCTCTTAGGAAACAACATGCAGCTGAACT
CCATCTAGGGGATTTCTTAGTTTTTCTTCGAAGAGTTGTGTCTTCAAAAGCAATTCAATCAAAA
ATGGCTTCCCCAAAGTGGACAGAGGTGCTTCTAAATATAGCATCTCAGAAGTGTTCTTCAGGTA
TTCCTCTAGTTGGTAACTTAAGAACAAGGCTCCTTGCACTTCATGTTCTTGAAGCTGTGCTACC
AGCTTGTGAATCTGGAGTAGAAGATGACCAAATGGCTCAGGTAGTTGAGCGCCTGTTTTCCCTT
CTATCGGATTGTATGTGGGAGACTCCCATTGCTCAGGCCAAACATGCTATTCAGATAAAGGAAA
AAGAACAAGAAATAAAATCACAGAAGCAAGGAGAATTGGAGGAAGAAGATGAGAATCTTCCCAT
ACAAGAAGTATCTTTTGACCCAGAGAAAGCCCAGTGTTGCATAGTGGAAAATGGACAGATTTTA
ACTCATGGCAGTGGAGGAAAAGGATATGGCTTGGCATCAACTGGAGTAACTTCTGGATGCTATC
AGTGGAAGTTTTACATTGTGAAGGAAAACAGAGGTAATGAAGGCACATGTGTCGGAGTTTCTCG
TTGGCCAGTACATGACTTTAACCACCGTACCACCTCAGATATGTGGCTTTATAGGGCCTACAGT
GGTAACCTCTACCACAATGGAGAACAAACACTGACGTTGTCCAGCTTTACTCAAGGAGATTTCA
TTACCTGTGTATTAGACATGGAAGCCAGGACTATTTCCTTTGGGAAAAATGGAGAGGAACCTAA
ATTAGCTTTTGAAGATGTGGATGCAGCAGAGTTGTACCCATGTGTAATGTTCTATAGTAGCAAC
CCAGGTGAAAAGGTGAAAATTTGTGATATGCAGATGCGAGGCACACCACGGGACTTACTTCCAG
GAGACCCCATTTGTAGTCCAGTAGCAGCAGTGCTAGCTGAGGCCACTATTCAACTTATCCGTAT
CCTTCACCGAACAGACCGTTGGACTTACTGCATTAACAAAAAAATGATGGAAAGGCTACATAAA
ATTAAGATATGTATTAAAGAGTCAGGTCAGAAGCTAAAGAAAAGCCGCTCGGTTCAGAGCCGAG
AGGAAAATGAAATGAGAGAGGAGAAGGAGAACAAAGAGGAAGAGAAAGGTAAACATAATAGACA
TGGCCTTGCTGACCTCTCAGAGCCACAGCTGAGGACTCTTTGCATAGAGGTGTGGCCAGTTCTG
GCAGTGATAGGAGGAGTTGATGCTGGTCTTAGAGTTGGAGGTCGGTGTGTTCACAAGCAAACTG
GGCGCCATGCCACGCTGCTGGGAGTGGTCAAAGAGGGTAGCACGTCTGCCAAGGTCCAATGGGA
TGAAGCAGAAATTACCATCAGCTTCCCAACTTTTTGGTCGCCTAGTGATACTCCATTGTATAAT
CTGGAGCCCTGTGAACCACTGCCGTTTGATGTGGCACGATTCCGAGGCCTGACAGCTTCTGTGC
TGCTGGACCTAACATATCTAACAGGCATTCATGAAGATATGGGGAAACAGAGCACCAAGCGTCA
TGAAAAGAAACACCGACATGAGTCTGAAGAGAAAGGGGACGTTGATCAGAAACCTGAGAGTGAA
TCTACTTTAGATGTGCGAACAGGATTAACAGCTGATGATGTCAAAAGTCAGGGTACCACAAGCT
CCAAATCAGAAAATGAAATAGTTTCATTTTCTTTAGATCAAACATTGCCAGGAGTGGAATCCCA
ACATCAAATAACAGAAGGAAAAAGAAAAAATCACGAACATGTGTCCAAAAACCATGACATAGCC
CAATCAGAAATCAGAGCAGTACAGCTGTCCTATCTTTACCTTGGTGCTATGAAATCACTTAGTG
CTCTTCTTGGCTGTAGTAAATATGCTGAGCTGTTGTTGATACCAAAAGTCCTGGCTGAAAATGG
CCACAACTCAGACTGTGCAAGCTCACCAGTTGTTCATGAAGATGTGGAAATGCGTGCAGCCCTA
CAGTTTTTGATGCGACACATGGTGAAGCGAGCAGTCATGCGGTCACCCATAAAGAGAGCATTAG
GATTAGCTGATCTGGAACGAGCTCAAGCCATGATTTACAAACTAGTGGTCCATGGGCTTTTGGA
AGACCAGTTTGGGGGCAAAATCAAACAAGAGGTTGATCAACAAGCTGAAGAAGCTGACCATGCC
CAGCAGGCACAGACACCTGTTACCACGAGCCCATCAGCCTCAAGCACAACTTCCTTTATGAGCA
GCTCCCTTGAGGACACCACAACTGCCACCACTCCAGTCACTGACACAGAAACGGTGCCTGCATC
TGAGTCCCCAGGAGTGATGCCACTTAGTCTTCTCAGGCAAATGTTCTCTAGTTATCCAACTACC
ACTGTACTTCCCACACGTCGGGCACAGACTCCTCCAATATCGTCGTTACCAACTTCTCCTTCTG
ATGAAGTAGGAAGGAGGCAAAGTTTAACTTCTCCTGATTCACAGTCAGCAAGGCCAGCTAATCG
TACAGCCTTGTCAGATCCAAGCAGTAGACTTTCAACTTCTCCTCCTCCTCCAGCAATTGCTGTT
CCATTGCTGGAAATGGGGTTCTCACTCCGACAGATTGCCAAAGCCATGGAAGCTACAGGTGCTC
GAGGAGAGGCTGATGCCCAGAATATTACTGTCCTTGCCATGTGGATGATAGAGCACCCTGGGCA
TGAGGATGAGGAAGAGCCCCAGCCAGGCAGCACAACTGACTCCAGGCATGGAGCAGCAGTTTTA
GGCAGTGGTGGAAAGTCAAATGATCCCTGTTATTTGCAGTCACCAGGAGACATACCGTCAGCAG
ATGCTGCTGAAATGGAGGAAGGCTTTAGTGAAAGCACTGATAATCTGGATCATACAGAGAATGC
AGCTTCTGGAAGTGGACCACCAGCTAGAGGTCGCTCAGCAGTAACAAGAAGGCACAAGTTTGAT
TTAGCAGCTCGCACATTGCTAGCGAGAGCAGCGGGGTTATACCGCTCTGTGCAGGCCCACAGGA
ATCAAAGTCGGAGAGAAGGAATATCTTTGCAGCAAGACCCAGGGGCGTTGTATGACTTTAATTT
AGATGAGGAATTGGAAATTGATCTTGATGATGAAGCAATGGAAGCTATGTTTGGACAAGACCTG
ACCAGTGACAATGATATTCTGGGAATGTGGATCCCAGAGGTACTGGATTGGCCTACCTGGCATG
TTTGTGAGTCTGAAGATAGGGAAGAAGTGGTGGTATGTGAACTGTGTGAATGCAGTGTCGTCAG
CTTCAATCAGCACATGAAGAGAAACCACCCAGGCTGTGGGCGCAGTGCAAATCGTCAGGGCTAT
CGCAGTAATGGCTCTTATGTGGATGGCTGGTTCGGTGGTGAATGTGGGAGTGGAAATCCATACT
ACCTGCTATGTGGAAGCTGCAGGGAGAAGTATTTAGCTCTGAAGACTAAGTCCAAGACAACAAA
TTCTGAAAGGTACAAGGGACAAGCTCCAGATCTAATTGGCAAGCAGGACAGTGTATATGAAGAA
GACTGGGACATGTTAGATGTTGATGAAGATGAAAAGCTGACAGGTGAAGAGGAATTTGAATTGC
TTGCTGGACCACTTGGTTTAAATGACCGGCGCATTGTACCAGAACCAGTTCAGTTCCCTGACAG
TGACCCACTAGGAGCATCAGTGGCAATGGTCACAGCTACCAACAGTATGGAAGAGACTCTTATG
CAAATAGGTTGCCATGGCTCTGTAGAAAAGAGTTCCTCTGGGAGAATAACATTAGGAGAGCAGG
CAGCAGCTCTTGCAAATCCTCATGACCGGGTGGTGGCTTTAAGGAGAGTCACAGCTGCTGCTCA
AGTTCTTCTGGCTAGAACCATGGTCATGAGAGCACTGTCTCTTCTCTCAGTCAGTGGTTCGAGT
TGTAGTCTGGCTGCTGGTCTTGAGTCTCTGGGGCTAACAGATATCCGAACACTGGTTCGATTAA
TGTGCTTGGCTGCAGCAGGAAGAGCTGGCCTCTCTACCAGCCCTTCAGCTACAGCAGGCACCTC
AGAACGTTCACGAGGCAGTCACAGCAAGACCAACAAACCTATTTCTTGCCTCGCCTATCTGAGC
ACAGCAGTGGGATGTCTGGCATCAAACACTCCTAGTGCTGCAAAACTGCTGGTGCAGTTGTGTA
CACAGAACTTGATTTCTGCTGCAACAGGTGTAAATCTAACCACAGTCGATGATCCAATTCAGAG
AAAGTTTCTACCAAGCTTTCTCCGAGGAATTGCTGAAGAGAATAAGCTTGTAACCTCTCCAAAC
TTTGTTGTAACACAGGCCCTTGTGGCATTACTAGCAGACAAAGGGGCCAAACTGAGACCTAACT
ATGATAAGTCAGAAGTTGAAAAGAAAGGCCCTCTGGAGCTGGCTAATGCCCTGGCAGCCTGCTG
CCTCTCCTCCAGGCTGTCCTCACAGCATAGGCAATGGGCTGCTCAACAACTTGTACGCACTCTT
GCTGCGCACGACCGTGACAACCAAACTGCTCCACAAACACTGGCTGATATGGGAGGAGATCTCA
GGAAATGTTCCTTTATCAAGTTGGAGGCTCATCAGAACAGAGTAATGACATGTGTTTGGTGTAA
TAAAAAAGGTCTCTTAGCTACAAGTGGCAATGATGGCACCATTCGAGTGTGGAATGTTACCAAG
AAACAATATTCACTGCAACAGACCTGTGTATTCAACAGATTGGAAGGGGATGCTGAGGATAGCC
TTGGGTCACCCAGTGATCCAAGCTTCTCTCCTGTTTCTTGGAGCATCAGTGGCAAATATCTAGC
TGGGGCTTTGGAAAAGATGGTGAATATCTGGCAAGTTAATGGAGGAAAAGGATTAGTAGATATT
CAACCTCATTGGGTATCTGCCCTGGCTTGGCCAGAAGAGAGTCCAGCTACAGCCTGGTCAGGAG
AGTCTCCAGAATTACTGTTGGTGGGACGGATGGATGGATCTCTAGGACTGATTGAAGTTGTTGA
TGTGTCTACCATGCACCGTCGAGAATTGGAGCATTGCTATCGAAAGGATGTATCTGTTACTTGC
ATTGCTTGGTTCAGTGAAGATAGACCATTTGCAGTGGGATATTTTGATGGAAAATTGCTACTGG
GAACAAAGGAACCACTTGAGAAAGGAGGCATTGTTCTAATTGATGCACATAAGGATACTCTTGT
CAGTATGAAATGGGACCCAACAGGCCATATTCTTATGACATGTGCCAAAGAAGAAAATGTGAAA
CTCTGGGGACTTATTTCAGGATGCTGGCGCTGTCTGCATTCACTCTGTCATCCATCTATTGTGA
ATGGCATTGCTTGGTGCAACCTTCCAGGGAGAGGATCCAAGTTGCAGTTACTAATGGCTACTGG
CTGTCAGAGTGGCTTGGTATGTGTTTGGTGTATTCCACAAGATATGACACAGACCAGTATGACT
AGTTCAGAAGGATGGTGGGACCAGGAATCAAATTGCCAGGATGGATATAGGAAATTGGCAGGAG
CCAAATGTATTTATCAACTGCGGGGACACATCACTCCTGTTCGAACTGTTGCCTTTAGTTCTGA
TGGGTTGGCCCTGGTGTCTGGTGGACTTGGTGGACTCATGAACATTTGGTCTTTAAGGGATGGC
TCTGTCTTACAGACAGTTGTGATAGGCTCTGGAGCTATTCAAACCACAGTGTGGATTCCAGAAG
TTGGGGTGGCTGCTTGCTCAAATAGATCAAAGGATGTTTTAGTTGTGAATTGTACAGCAGAATG
GGCTGCTGCCAATCATGTTTTAGCAACTTGTAGAACGGCACTGAAACAACAGGGTGTTCTGGGA
TTAAACATGGCTCCTTGCATGAGAGCATTTCTGGAGCGGTTACCCATGATGCTTCAGGAGCAGT
ATGCCTATGAAAAGCCTCATGTGGTTTGTGGTGACCAGCTTGTTCACAGCCCCTATATGCAATG
TCTGGCTTCCCTTGCTGTGGGACTTCATCTGGATCAGCTGTTGTGTAGCCCTCCAGTGCCACCA
CACCACCAGAACTGCCTCCCTGACCCTTCATCCTGGAATCCAAACGAGTGGGCCTGGTTAGAAT
GCTTCTCAACCACCATTAAAGCTGCTGAAGCCCTGACCAATGGAACACAATTTCCAGAATCTTT
TACTGTTCCAGATCTAGAGCCTGTTCCAGAGGATGAACTTGTATTCCTAATGGATAACAGTAAG
TGGATCAATGGCATGGATGAGCAAATTATGTCATGGGCAACTTCTAGACCTGAGGACTGGCACC
TGGGAGGTAAATGTGATGTCTACCTGTGGGGTGCTGGTAGGCATGGACAGCTGGCAGAAGCAGG
AAGAAATGTAATGGTACCTGCCGCAGCTCCCTCATTCTCACAGGCACAACAGGTTGTATGTGGT
CAGAATTGTACATTTGTTATCCAGGCCAATGGTACAGTGTTGGCTTGTGGAGAAGGAAGTTATG
GCAGATTAGGACAAGGAAATTCTGATGACCTTCATGTGCTAACAGTTATTTCAGCCTTACAAGG
CTTTGTGGTGACCCAGCTGGTGACTTCCTGTGGTTCTGATGGGCACTCCATGGCCCTGACAGAA
AGTGGTGAAGTCTTTAGCTGGGGAGATGGTGACTATGGTAAACTTGGCCATGGCAACAGTGACA
GGCAGCGTCGGCCAAGGCAGATTGAGGCCTTACAAGGAGAAGAAGTGGTACAGATGTCTTGTGG
CTTTAAGCACTCAGCAGTGGTAACTTCAGATGGCAAACTGTTTACCTTTGGTAATGGTGACTAT
GGTCGTCTGGGTCTTGGCAACACCTCTAACAAAAAACTTCCTGAGAGAGTGACTGCACTGGAAG
GATATCAAATTGGACAAGTAGCCTGTGGGCTGAACCACACTTTGGCAGTGTCAGCAGATGGCTC
CATGGTGTGGGCTTTTGGAGATGGAGACTATGGAAAGCTAGGCTTAGGAAATTCCACTGCAAAA
TCTTCACCTCAGAAAGTTGATGTCCTCTGTGGAATTGGAATTAAAAAGGTTGCTTGTGGAACTC
AGTTTTCCGTTGCTTTGACCAAGGATGGTCATGTGTATACCTTTGGTCAAGATCGCTTGATAGG
CTTGCCTGAGGGACGTGCCCGCAATCATAATCGGCCACAGCAAATCCCTGTCCTGGCTGGAATA
GTGATTGAAGATGTGGCAGTTGGAGCTGAACACACACTTGCTTTGGCATCAACTGGAGATGTAT
ATGCCTGGGGGAGTAATTCAGAAGGGCAGCTTGGCCTCGGCCATACCAACCATGTTCGAGAACC
AACTCTGGTAACAGTTCTGCAAGGGAAAAACATTCGGCAGATCTCAGCTGGCCGTTGCCACAGT
GCAGCTTGGACAGCACCACCTGTCCCACCAAGAGCACCAGGTGTGTCAGTACCTCTGCAGCTGG
GCCTTCCTGATGCAGTGCCCCCGCAATATGGGGCCCTGAGAGAGGTGAGCATCCACACTGTGCG
CGCCAGGCTCCGGCTGCTTTACCACTTCTCGGACCTCATGTACTCATCCTGGAGGCTACTGAAT
CTCAGCCCTAACAACCAGAATAGCACATCTCATTATAATGCTGGAACTTGGGGCATTGTACAGG
GACAGCTGCGGCCTTTGTTAGCTCCAAGAGTCTACACTCTTCCAATGGTGCGCTCCATAGGAAA
AACCATGGTTCAAGGCAAAAACTATGGACCGCAAATTACTGTGAAGAGAATATCAACCAGAGGA
CGGAAATGTAAGCCCATCTTCGTTCAGATAGCAAGACAAGTGGTTAAGCTGAATGCTTCAGACC
TCCGTTTGCCCTCCCGAGCATGGAAGGTTAAGCTGGTCGGAGAAGGGGCTGATGATGCTGGAGG
AGTGTTTGATGACACCATCACAGAGATGTGCCAGGAACTTGAAACTGGGATAGTTGACCTTCTT
ATACCATCTCCTAATGCCACCGCAGAAGTGGGTTATAATAGGGATAGGTTCCTATTTAACCCTT
CTGCTTGTCTGGATGAACACTTAATGCAGTTTAAGTTCTTGGGAATTTTAATGGGAGTTGCTAT
TCGTACAAAGAAACCTCTGGACCTCCACTTGGCCCCTCTGGTGTGGAAGCAGCTGTGCTGTGTC
CCGCTCACCCTGGAGGACCTGGAGGAGGTGGATCTGCTCTACGTGCAGACCCTCAACAGCATTC
TTCACATTGAAGACAGTGGCATTACTGAGGAAAGTTTCCATGAGATGATTCCTCTTGATTCTTT
TGTTGGCCAGAGTGCTGATGGCAAAATGGTTCCTATAATCCCTGGTGGAAATAGTATCCCACTC
ACATTTTCCAATAGGAAGGAGTATGTGGAGAGGGCCATTGAATATAGACTTCATGAGATGGACC
GGCAGGTGGCTGCAGTCCGAGAAGGGATGTCCTGGATTGTCCCTGTGCCACTGCTGTCCCTTCT
CACAGCGAAACAGCTGGAGCAGATGGTGTGCGGGATGCCCGAGATCTCTGTTGAGGTCTTGAAG
AAGGTGGTGCGGTACCGTGAGGTGGATGAGCAGCACCAGCTGGTGCAGTGGTTCTGGCACACGC
TGGAGGAGTTCTCCAACGAGGAGCGGGTGCTCTTCATGCGGTTCGTGTCTGGACGCTCTCGACT
TCCAGCCAACACTGCTGACATTTCTCAGAGGTTTCAAATCATGAAGGTTGATAGGCCTTACGAC
AGTCTGCCTACCTCACAGACGTGCTTCTTCCAGCTGAGGCTGCCCCCCTACTCCAACCAGCTGG
TCATGGCTGAGCGCCTGCGCTATGCCATTAACAACTGCCGCTCCATCGACATGGACAACTACAT
GCTCTCAAGAAACGTGGACAACACCGAGGGCTCTGACACTGACTACTGAACGACCGTGGGTGCT
GTCACCCCCTCCTTTTTCTCAATAATGCTCACTTCCAATTTGATGTTGATATACTTTTATGGTA
ACTAAATAGATGTTTTAGGATCATAAACCGACATTATAAACAGTGGCCGCATTTAGTTACTCTA
AATTTAACAAAGAAATTAGATGTTTTTATTTTTCTGTGATTATACAAAAACAAAACAAAAAAAA
CAAAACAAAACAAAAGCAAAGTCCTCTCAGTCAGGTTTTTCCCTCCATATTTTTGGTCACTTTT
GATAGGTTTGCATGGAACCATTTTGGTGCATTTTTAGTTGGGAATGATACCTTTTTGTAAACCC
ACCCAGTGAACATGAAATTGTACATTGTGTATAATTGTTCATTAGAAAGGACAGTTTTACATGA
ATATTCACATATTTATTTTGTTTTAATTTGAATTGCCTGTGCAGGGTTCCTTATGCAGAGAAAT
AAAGCAGATTCAGAAAT

hide sequence

RefSeq Acc Id:

XM_040274880 ⟹ XP_040130814

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,872 (-)	NCBI

RefSeq Acc Id:

XM_040274881 ⟹ XP_040130815

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,474 (-)	NCBI

RefSeq Acc Id:

XM_040274882 ⟹ XP_040130816

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,872 (-)	NCBI

RefSeq Acc Id:

XM_040274883 ⟹ XP_040130817

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,872 (-)	NCBI

RefSeq Acc Id:

XM_040274884 ⟹ XP_040130818

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,872 (-)	NCBI

RefSeq Acc Id:

XM_040274885 ⟹ XP_040130819

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,872 (-)	NCBI

RefSeq Acc Id:

XM_040274886 ⟹ XP_040130820

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,872 (-)	NCBI

RefSeq Acc Id:

XM_040274887 ⟹ XP_040130821

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,872 (-)	NCBI

RefSeq Acc Id:

XM_040274888 ⟹ XP_040130822

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	106,294,164 - 106,482,872 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_021582975	(Get FASTA)	NCBI Sequence Viewer
	XP_040130814	(Get FASTA)	NCBI Sequence Viewer
	XP_040130815	(Get FASTA)	NCBI Sequence Viewer
	XP_040130816	(Get FASTA)	NCBI Sequence Viewer
	XP_040130817	(Get FASTA)	NCBI Sequence Viewer
	XP_040130818	(Get FASTA)	NCBI Sequence Viewer
	XP_040130819	(Get FASTA)	NCBI Sequence Viewer
	XP_040130820	(Get FASTA)	NCBI Sequence Viewer
	XP_040130821	(Get FASTA)	NCBI Sequence Viewer
	XP_040130822	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000014391.3
GenBank Protein	KAG3262020	(Get FASTA)	NCBI Sequence Viewer
	KAG3262021	(Get FASTA)	NCBI Sequence Viewer
	KAG3262022	(Get FASTA)	NCBI Sequence Viewer
	KAG3262023	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021582975 ⟸ XM_021727300
- Peptide Label:	isoform X9
- UniProtKB:	I3MQV8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATMVPPVKLKWLEHLNSSWITEDSESIATREGVAVLYSKLVSNKEVVPLPQQVFCLKGPQLPD FERESLSSDEQDHYLDALLSSQLALAKMVCSDSPFAGALRKRLLVLQRVFYALSNKYHDKGKVK QQQHSPESSSGSADVHSVSERPRSSTDALIEMGVRTGLSLLFALLRQSWMMPVSGPGLSLCNDV IHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLKGVTIPNSGADTLGRRLASELLLGLAA QRGSLRYLLEWIEMALGASAVVNTMEKNKLLSSQEGMISFDCFMTILMQMRRSLGSSADRSQWR EPTRTSDGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQTGDAPIVSETCEVYVWGSNSSHQ LVEGTQEKILQPKLAPSFSDAQTIEAGQYCTFVISTDGSVRACGKGSYGRLGLGDSNNQSTLKK LTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKV VVCVSAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDISNVGEVSCGSSHTIAL SKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLSLTSTGQVYAWGC GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTG PITKPKKVSGLDGIAIQQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERY CDKINSEIPPLPFPSSREHHNFLKLCLKLLSNHLALALAGGVATSILGRQAGPLRNLLFRLMDS TVPDEIQEVVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQRMQLDIILTSLQDH THVASLLGYSSPSDAADLSSVCTSYGNLSDQSYGTQSCHPDTHLAEILMKTLLRNLGFYTDQAF GELEKNSDKFLLGTSSSENSQPAHLHELLCSLQKQLLAFCHINNISENSSSVALLHKHLQLLLP HATDIYSRSANLLKESPWNGSVGDKLRDVIYVSAAGSMLCQIVNSLLLLPVSVARPLLSYLLDL LPPLDCLNRLLPAAALLEDQELQWPLHGGPEVIDPAGVPLPQPAQSWVWLVDLERTIALLIGRC LGGMLQGSPVSPEEQDTAYWMKTPLFSDGVEMDTPQLDKCMSCLLEVALSGNEEQKPFDYKLRP EIAVYVDLALGCSKEPARSLWISMQDYAVSKDWDSATLSNESLLDTVSRFVLAALLKHTNLLGQ ACGESRYQPGKSLSEVYRCVYKVRSRLLACKNLELIQTRSSSRDRWISDNQDSADVDPQEHSFT RTIDEEAEMEEQAERDREEGHPEPEDEEEEREHEVMTAGKIFQCFLSAREVARSRDRDRMNSGA GSGARVDDPPPQSQQERRVSTDLPEGQDVYTAACNSVIHRCALLILGVSPVIDELQKRREEGQL QQPSTSASEGGGLMTRSESLTAESRLVHASPNYRLIKSRSESDLSQPESDEESYALSGRRNVDL DLASSHRKRGPMHSQLESLSDSWARLKHSRDWLYNSSYSFESDFDLTKSLGVHTLIENVVSFVS GDVGNAPGFKEPEESMSTSPQASIIAMEQQQLRAELRLEALHQILVLLSGMEEKGSISLVGSRS NSGFQSSTLLTSVRLQFLAGCFGLGTVGHTGAKGESGRLHHYQDGIRAAKRNIQIEIQVAVHKI YQQLSATLERALQANKHHIEAQQRLLLVTVFALSVHYQPVDVSLAISTGLLNVLSQLCGTDTML GQPLQLLPKTGVSQLSTALKVASTRLLQILAITTGTYADKLSPKIVQSLLDLLCSQLKNLLSQT GVLLMASFGEGEGEEGEEEEEKKVDSSGETEKKDFRAALRKQHAAELHLGDFLVFLRRVVSSKA IQSKMASPKWTEVLLNIASQKCSSGIPLVGNLRTRLLALHVLEAVLPACESGVEDDQMAQVVER LFSLLSDCMWETPIAQAKHAIQIKEKEQEIKSQKQGELEEEDENLPIQEVSFDPEKAQCCIVEN GQILTHGSGGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTCVGVSRWPVHDFNHRTTSDMWLY RAYSGNLYHNGEQTLTLSSFTQGDFITCVLDMEARTISFGKNGEEPKLAFEDVDAAELYPCVMF YSSNPGEKVKICDMQMRGTPRDLLPGDPICSPVAAVLAEATIQLIRILHRTDRWTYCINKKMME RLHKIKICIKESGQKLKKSRSVQSREENEMREEKENKEEEKGKHNRHGLADLSEPQLRTLCIEV WPVLAVIGGVDAGLRVGGRCVHKQTGRHATLLGVVKEGSTSAKVQWDEAEITISFPTFWSPSDT PLYNLEPCEPLPFDVARFRGLTASVLLDLTYLTGIHEDMGKQSTKRHEKKHRHESEEKGDVDQK PESESTLDVRTGLTADDVKSQGTTSSKSENEIVSFSLDQTLPGVESQHQITEGKRKNHEHVSKN HDIAQSEIRAVQLSYLYLGAMKSLSALLGCSKYAELLLIPKVLAENGHNSDCASSPVVHEDVEM RAALQFLMRHMVKRAVMRSPIKRALGLADLERAQAMIYKLVVHGLLEDQFGGKIKQEVDQQAEE ADHAQQAQTPVTTSPSASSTTSFMSSSLEDTTTATTPVTDTETVPASESPGVMPLSLLRQMFSS YPTTTVLPTRRAQTPPISSLPTSPSDEVGRRQSLTSPDSQSARPANRTALSDPSSRLSTSPPPP AIAVPLLEMGFSLRQIAKAMEATGARGEADAQNITVLAMWMIEHPGHEDEEEPQPGSTTDSRHG AAVLGSGGKSNDPCYLQSPGDIPSADAAEMEEGFSESTDNLDHTENAASGSGPPARGRSAVTRR HKFDLAARTLLARAAGLYRSVQAHRNQSRREGISLQQDPGALYDFNLDEELEIDLDDEAMEAMF GQDLTSDNDILGMWIPEVLDWPTWHVCESEDREEVVVCELCECSVVSFNQHMKRNHPGCGRSAN RQGYRSNGSYVDGWFGGECGSGNPYYLLCGSCREKYLALKTKSKTTNSERYKGQAPDLIGKQDS VYEEDWDMLDVDEDEKLTGEEEFELLAGPLGLNDRRIVPEPVQFPDSDPLGASVAMVTATNSME ETLMQIGCHGSVEKSSSGRITLGEQAAALANPHDRVVALRRVTAAAQVLLARTMVMRALSLLSV SGSSCSLAAGLESLGLTDIRTLVRLMCLAAAGRAGLSTSPSATAGTSERSRGSHSKTNKPISCL AYLSTAVGCLASNTPSAAKLLVQLCTQNLISAATGVNLTTVDDPIQRKFLPSFLRGIAEENKLV TSPNFVVTQALVALLADKGAKLRPNYDKSEVEKKGPLELANALAACCLSSRLSSQHRQWAAQQL VRTLAAHDRDNQTAPQTLADMGGDLRKCSFIKLEAHQNRVMTCVWCNKKGLLATSGNDGTIRVW NVTKKQYSLQQTCVFNRLEGDAEDSLGSPSDPSFSPVSWSISGKYLAGALEKMVNIWQVNGGKG LVDIQPHWVSALAWPEESPATAWSGESPELLLVGRMDGSLGLIEVVDVSTMHRRELEHCYRKDV SVTCIAWFSEDRPFAVGYFDGKLLLGTKEPLEKGGIVLIDAHKDTLVSMKWDPTGHILMTCAKE ENVKLWGLISGCWRCLHSLCHPSIVNGIAWCNLPGRGSKLQLLMATGCQSGLVCVWCIPQDMTQ TSMTSSEGWWDQESNCQDGYRKLAGAKCIYQLRGHITPVRTVAFSSDGLALVSGGLGGLMNIWS LRDGSVLQTVVIGSGAIQTTVWIPEVGVAACSNRSKDVLVVNCTAEWAAANHVLATCRTALKQQ GVLGLNMAPCMRAFLERLPMMLQEQYAYEKPHVVCGDQLVHSPYMQCLASLAVGLHLDQLLCSP PVPPHHQNCLPDPSSWNPNEWAWLECFSTTIKAAEALTNGTQFPESFTVPDLEPVPEDELVFLM DNSKWINGMDEQIMSWATSRPEDWHLGGKCDVYLWGAGRHGQLAEAGRNVMVPAAAPSFSQAQQ VVCGQNCTFVIQANGTVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSM ALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFG NGDYGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGN STAKSSPQKVDVLCGIGIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPV LAGIVIEDVAVGAEHTLALASTGDVYAWGSNSEGQLGLGHTNHVREPTLVTVLQGKNIRQISAG RCHSAAWTAPPVPPRAPGVSVPLQLGLPDAVPPQYGALREVSIHTVRARLRLLYHFSDLMYSSW RLLNLSPNNQNSTSHYNAGTWGIVQGQLRPLLAPRVYTLPMVRSIGKTMVQGKNYGPQITVKRI STRGRKCKPIFVQIARQVVKLNASDLRLPSRAWKVKLVGEGADDAGGVFDDTITEMCQELETGI VDLLIPSPNATAEVGYNRDRFLFNPSACLDEHLMQFKFLGILMGVAIRTKKPLDLHLAPLVWKQ LCCVPLTLEDLEEVDLLYVQTLNSILHIEDSGITEESFHEMIPLDSFVGQSADGKMVPIIPGGN SIPLTFSNRKEYVERAIEYRLHEMDRQVAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPEISV EVLKKVVRYREVDEQHQLVQWFWHTLEEFSNEERVLFMRFVSGRSRLPANTADISQRFQIMKVD RPYDSLPTSQTCFFQLRLPPYSNQLVMAERLRYAINNCRSIDMDNYMLSRNVDNTEGSDTDY hide sequence

RefSeq Acc Id:	XP_040130820 ⟸ XM_040274886
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_040130822 ⟸ XM_040274888
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_040130821 ⟸ XM_040274887
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_040130816 ⟸ XM_040274882
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040130819 ⟸ XM_040274885
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040130818 ⟸ XM_040274884
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040130817 ⟸ XM_040274883
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040130814 ⟸ XM_040274880
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040130815 ⟸ XM_040274881
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSSTOP00000014391 ⟸ ENSSTOT00000016079

Protein Domains

B30.2/SPRY HECT

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000016063	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000016079.3	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	2.130.10.30	UniProtKB/TrEMBL
	2.60.120.920	UniProtKB/TrEMBL
	Hect, E3 ligase catalytic domain	UniProtKB/TrEMBL
	Hect, E3 ligase catalytic domain	UniProtKB/TrEMBL
	Hect, E3 ligase catalytic domains	UniProtKB/TrEMBL
InterPro	B30.2/SPRY	UniProtKB/TrEMBL
	B30.2/SPRY_sf	UniProtKB/TrEMBL
	ConA-like_dom_sf	UniProtKB/TrEMBL
	HECT_dom	UniProtKB/TrEMBL
	Hect_E3_ubiquitin_ligase	UniProtKB/TrEMBL
	RCC1/BLIP-II	UniProtKB/TrEMBL
	Reg_chr_condens	UniProtKB/TrEMBL
	Signaling_Regulatory_Domain	UniProtKB/TrEMBL
	SPRY_dom	UniProtKB/TrEMBL
	SPRY_HERC1	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Herc1	ENTREZGENE
PANTHER	BTK-BINDING PROTEIN-RELATED	UniProtKB/TrEMBL
	HECT AND RLD DOMAIN CONTAINING E3 UBIQUITIN PROTEIN LIGASE FAMILY MEMBER 1	UniProtKB/TrEMBL
Pfam	HECT	UniProtKB/TrEMBL
	RCC1	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
PRINTS	RCCNDNSATION	UniProtKB/TrEMBL
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	HECT	UniProtKB/TrEMBL
	RCC1_2	UniProtKB/TrEMBL
	RCC1_3	UniProtKB/TrEMBL
	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	HECTc	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49899	UniProtKB/TrEMBL
	SSF50978	UniProtKB/TrEMBL
	SSF50985	UniProtKB/TrEMBL
	SSF56204	UniProtKB/TrEMBL
UniProt	I3MQV8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM