SCML2 (Scm polycomb group protein like 2) - Rat Genome Database

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Gene: SCML2 (Scm polycomb group protein like 2) Canis lupus familiaris
Analyze
Symbol: SCML2
Name: Scm polycomb group protein like 2
RGD ID: 12268092
Description: INVOLVED IN apoptotic process (ortholog); protein localization (ortholog); protein localization to chromosome (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Coffin-Lowry syndrome (ortholog); developmental and epileptic encephalopathy 2 (ortholog); FOUND IN chromatin (ortholog); XY body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sex comb on midleg like 2; sex comb on midleg like 2 (Drosophila); sex comb on midleg-like 2 (Drosophila); sex comb on midleg-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X14,334,769 - 14,436,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX14,335,013 - 14,437,176 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X14,297,274 - 14,397,418 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX14,298,899 - 14,397,962 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X14,364,374 - 14,464,474 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X14,357,320 - 14,457,326 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X14,420,959 - 14,521,278 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
nucleus  (IBA,IEA)
PcG protein complex  (IEA)
XY body  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SCML2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X14,334,769 - 14,436,614 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX14,335,013 - 14,437,176 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X14,297,274 - 14,397,418 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX14,298,899 - 14,397,962 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X14,364,374 - 14,464,474 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X14,357,320 - 14,457,326 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X14,420,959 - 14,521,278 (-)NCBIUU_Cfam_GSD_1.0
SCML2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X18,239,313 - 18,355,118 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX18,239,313 - 18,354,688 (-)EnsemblGRCh38hg38GRCh38
GRCh37X18,257,433 - 18,372,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X18,167,355 - 18,282,699 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X18,017,090 - 18,132,435NCBI
CeleraX22,377,536 - 22,492,940 (-)NCBICelera
Cytogenetic MapXp22.13NCBI
HuRefX16,015,093 - 16,108,084 (-)NCBIHuRef
CHM1_1X18,287,820 - 18,403,223 (-)NCBICHM1_1
T2T-CHM13v2.0X17,821,927 - 17,937,732 (-)NCBIT2T-CHM13v2.0
Scml2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X159,865,521 - 160,041,214 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX159,865,521 - 160,041,209 (+)EnsemblGRCm39 Ensembl
GRCm38X161,082,525 - 161,258,218 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX161,082,525 - 161,258,213 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X157,600,704 - 157,696,145 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X156,507,165 - 156,599,764 (+)NCBIMGSCv36mm8
CeleraX144,403,550 - 144,496,517 (+)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX73.95NCBI
Scml2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X37,331,893 - 37,486,465 (-)NCBIGRCr8
mRatBN7.2X33,523,179 - 33,677,672 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX33,524,530 - 33,652,742 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X35,305,235 - 35,431,271 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX35,305,236 - 35,431,164 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X35,634,754 - 35,785,344 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X54,798,550 - 54,896,488 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX34,217,918 - 34,346,511 (-)NCBICelera
Cytogenetic MapXq14NCBI
Scml2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555193,696 - 84,237 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495551916,839 - 84,226 (+)NCBIChiLan1.0ChiLan1.0
SCML2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X20,037,624 - 20,152,925 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X20,041,016 - 20,156,317 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X10,862,608 - 10,977,851 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X18,228,712 - 18,344,155 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX18,226,256 - 18,344,155 (-)Ensemblpanpan1.1panPan2
Scml2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X7,457,990 - 7,558,030 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364707,458,007 - 7,508,069 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364707,457,995 - 7,508,069 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCML2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX14,717,606 - 14,823,413 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X14,715,357 - 14,823,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X15,874,406 - 15,979,881 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCML2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X16,680,560 - 16,803,443 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX16,680,567 - 16,782,447 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605618,566,068 - 18,689,672 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scml2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248293,095,925 - 3,175,062 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SCML2
470 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005641159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014111918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014111919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038449536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038586963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038651471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_537972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAAHUQ010000369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000020307   ⟹   ENSCAFP00000018840
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX14,336,448 - 14,406,427 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000046770   ⟹   ENSCAFP00000037768
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX14,335,013 - 14,436,574 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000063693   ⟹   ENSCAFP00000055285
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX14,336,448 - 14,362,818 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000082753   ⟹   ENSCAFP00000053553
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX14,335,013 - 14,437,176 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000086727   ⟹   ENSCAFP00000043515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX14,335,013 - 14,437,176 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845043868   ⟹   ENSCAFP00845034378
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX14,298,899 - 14,397,962 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845044041   ⟹   ENSCAFP00845034511
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX14,298,899 - 14,397,383 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845044207   ⟹   ENSCAFP00845034641
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX14,298,949 - 14,367,272 (-)Ensembl
RefSeq Acc Id: XM_038449525   ⟹   XP_038305453
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,374,731 (-)NCBI
RefSeq Acc Id: XM_038449526   ⟹   XP_038305454
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,374,731 (-)NCBI
RefSeq Acc Id: XM_038449527   ⟹   XP_038305455
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,374,715 (-)NCBI
RefSeq Acc Id: XM_038449528   ⟹   XP_038305456
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,397,378 (-)NCBI
RefSeq Acc Id: XM_038449529   ⟹   XP_038305457
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,397,384 (-)NCBI
RefSeq Acc Id: XM_038449530   ⟹   XP_038305458
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,397,378 (-)NCBI
RefSeq Acc Id: XM_038449531   ⟹   XP_038305459
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,374,731 (-)NCBI
RefSeq Acc Id: XM_038449532   ⟹   XP_038305460
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,397,365 (-)NCBI
RefSeq Acc Id: XM_038449533   ⟹   XP_038305461
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,397,378 (-)NCBI
RefSeq Acc Id: XM_038449534   ⟹   XP_038305462
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,397,418 (-)NCBI
RefSeq Acc Id: XM_038449535   ⟹   XP_038305463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,297,274 - 14,397,378 (-)NCBI
RefSeq Acc Id: XM_038449536   ⟹   XP_038305464
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X14,298,788 - 14,374,731 (-)NCBI
RefSeq Acc Id: XM_038522965   ⟹   XP_038378893
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,441,747 (-)NCBI
RefSeq Acc Id: XM_038522966   ⟹   XP_038378894
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,441,747 (-)NCBI
RefSeq Acc Id: XM_038522967   ⟹   XP_038378895
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,441,731 (-)NCBI
RefSeq Acc Id: XM_038522968   ⟹   XP_038378896
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,464,434 (-)NCBI
RefSeq Acc Id: XM_038522969   ⟹   XP_038378897
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,464,440 (-)NCBI
RefSeq Acc Id: XM_038522971   ⟹   XP_038378899
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,464,434 (-)NCBI
RefSeq Acc Id: XM_038522972   ⟹   XP_038378900
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,441,747 (-)NCBI
RefSeq Acc Id: XM_038522973   ⟹   XP_038378901
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,464,421 (-)NCBI
RefSeq Acc Id: XM_038522974   ⟹   XP_038378902
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,464,434 (-)NCBI
RefSeq Acc Id: XM_038522975   ⟹   XP_038378903
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,464,474 (-)NCBI
RefSeq Acc Id: XM_038522976   ⟹   XP_038378904
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,364,374 - 14,464,434 (-)NCBI
RefSeq Acc Id: XM_038522977   ⟹   XP_038378905
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X14,365,911 - 14,441,747 (-)NCBI
RefSeq Acc Id: XM_038586952   ⟹   XP_038442880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,498,548 (-)NCBI
RefSeq Acc Id: XM_038586953   ⟹   XP_038442881
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,498,548 (-)NCBI
RefSeq Acc Id: XM_038586954   ⟹   XP_038442882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,498,532 (-)NCBI
RefSeq Acc Id: XM_038586955   ⟹   XP_038442883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,521,238 (-)NCBI
RefSeq Acc Id: XM_038586956   ⟹   XP_038442884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,521,244 (-)NCBI
RefSeq Acc Id: XM_038586957   ⟹   XP_038442885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,521,238 (-)NCBI
RefSeq Acc Id: XM_038586958   ⟹   XP_038442886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,498,548 (-)NCBI
RefSeq Acc Id: XM_038586959   ⟹   XP_038442887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,521,225 (-)NCBI
RefSeq Acc Id: XM_038586960   ⟹   XP_038442888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,521,238 (-)NCBI
RefSeq Acc Id: XM_038586961   ⟹   XP_038442889
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,521,278 (-)NCBI
RefSeq Acc Id: XM_038586962   ⟹   XP_038442890
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,420,959 - 14,521,238 (-)NCBI
RefSeq Acc Id: XM_038586963   ⟹   XP_038442891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X14,422,473 - 14,498,548 (-)NCBI
RefSeq Acc Id: XM_038651460   ⟹   XP_038507388
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,434,659 (-)NCBI
RefSeq Acc Id: XM_038651461   ⟹   XP_038507389
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,434,659 (-)NCBI
RefSeq Acc Id: XM_038651462   ⟹   XP_038507390
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,434,643 (-)NCBI
RefSeq Acc Id: XM_038651463   ⟹   XP_038507391
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,457,286 (-)NCBI
RefSeq Acc Id: XM_038651464   ⟹   XP_038507392
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,457,292 (-)NCBI
RefSeq Acc Id: XM_038651465   ⟹   XP_038507393
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,457,286 (-)NCBI
RefSeq Acc Id: XM_038651466   ⟹   XP_038507394
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,434,659 (-)NCBI
RefSeq Acc Id: XM_038651467   ⟹   XP_038507395
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,457,273 (-)NCBI
RefSeq Acc Id: XM_038651468   ⟹   XP_038507396
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,457,286 (-)NCBI
RefSeq Acc Id: XM_038651469   ⟹   XP_038507397
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,457,326 (-)NCBI
RefSeq Acc Id: XM_038651470   ⟹   XP_038507398
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,357,320 - 14,457,286 (-)NCBI
RefSeq Acc Id: XM_038651471   ⟹   XP_038507399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X14,358,834 - 14,434,659 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038305453 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305454 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305455 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305456 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305457 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305458 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305459 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305460 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305461 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305462 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305463 (Get FASTA)   NCBI Sequence Viewer  
  XP_038305464 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378893 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378894 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378895 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378896 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378897 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378899 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378900 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378901 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378902 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378903 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378904 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378905 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442880 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442881 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442882 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442884 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442886 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442887 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442888 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442889 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442890 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442891 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507388 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507389 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507390 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507391 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507392 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507393 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507394 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507395 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507396 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507397 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507398 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507399 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00040025511.1
  ENSCAFP00040025609.1
  ENSCAFP00040025686.1
  ENSCAFP00845034378
  ENSCAFP00845034378.1
  ENSCAFP00845034511
  ENSCAFP00845034511.1
  ENSCAFP00845034641
  ENSCAFP00845034641.1
Ensembl Acc Id: ENSCAFP00000055285   ⟸   ENSCAFT00000063693
Ensembl Acc Id: ENSCAFP00000018840   ⟸   ENSCAFT00000020307
Ensembl Acc Id: ENSCAFP00000043515   ⟸   ENSCAFT00000086727
Ensembl Acc Id: ENSCAFP00000053553   ⟸   ENSCAFT00000082753
Ensembl Acc Id: ENSCAFP00000037768   ⟸   ENSCAFT00000046770
RefSeq Acc Id: XP_038378903   ⟸   XM_038522975
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038378897   ⟸   XM_038522969
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038378899   ⟸   XM_038522971
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038378902   ⟸   XM_038522974
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038378896   ⟸   XM_038522968
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038378904   ⟸   XM_038522976
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038378901   ⟸   XM_038522973
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038378894   ⟸   XM_038522966
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038378900   ⟸   XM_038522972
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038378893   ⟸   XM_038522965
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038378895   ⟸   XM_038522967
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038378905   ⟸   XM_038522977
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038507397   ⟸   XM_038651469
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038507392   ⟸   XM_038651464
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038507393   ⟸   XM_038651465
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038507396   ⟸   XM_038651468
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038507391   ⟸   XM_038651463
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038507398   ⟸   XM_038651470
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038507395   ⟸   XM_038651467
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038507389   ⟸   XM_038651461
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038507394   ⟸   XM_038651466
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038507388   ⟸   XM_038651460
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038507390   ⟸   XM_038651462
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038507399   ⟸   XM_038651471
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038305462   ⟸   XM_038449534
- Peptide Label: isoform X10
- UniProtKB: A0A8I3Q5N7 (UniProtKB/TrEMBL),   A0A8C0YZK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305457   ⟸   XM_038449529
- Peptide Label: isoform X5
- UniProtKB: A0A8C0SSF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305458   ⟸   XM_038449530
- Peptide Label: isoform X6
- UniProtKB: A0A8C0YZK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305461   ⟸   XM_038449533
- Peptide Label: isoform X9
- UniProtKB: A0A8C0YZK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305456   ⟸   XM_038449528
- Peptide Label: isoform X4
- UniProtKB: A0A8C0YZK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305463   ⟸   XM_038449535
- Peptide Label: isoform X10
- UniProtKB: A0A8I3Q5N7 (UniProtKB/TrEMBL),   A0A8C0YZK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305460   ⟸   XM_038449532
- Peptide Label: isoform X8
- UniProtKB: A0A8I3PRY1 (UniProtKB/TrEMBL),   A0A8C0SUE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305454   ⟸   XM_038449526
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SUE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305459   ⟸   XM_038449531
- Peptide Label: isoform X7
- UniProtKB: A0A8C0SUE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305453   ⟸   XM_038449525
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SUE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305455   ⟸   XM_038449527
- Peptide Label: isoform X3
- UniProtKB: A0A8C0SSF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038305464   ⟸   XM_038449536
- Peptide Label: isoform X11
- UniProtKB: A0A8I3PJJ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442889   ⟸   XM_038586961
- Peptide Label: isoform X10
- UniProtKB: A0A8C0YZK6 (UniProtKB/TrEMBL),   A0A8I3Q5N7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442884   ⟸   XM_038586956
- Peptide Label: isoform X5
- UniProtKB: A0A8C0SSF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442885   ⟸   XM_038586957
- Peptide Label: isoform X6
- UniProtKB: A0A8C0YZK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442888   ⟸   XM_038586960
- Peptide Label: isoform X9
- UniProtKB: A0A8C0YZK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442883   ⟸   XM_038586955
- Peptide Label: isoform X4
- UniProtKB: A0A8C0YZK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442890   ⟸   XM_038586962
- Peptide Label: isoform X10
- UniProtKB: A0A8C0YZK6 (UniProtKB/TrEMBL),   A0A8I3Q5N7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442887   ⟸   XM_038586959
- Peptide Label: isoform X8
- UniProtKB: A0A8C0SUE8 (UniProtKB/TrEMBL),   A0A8I3PRY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442881   ⟸   XM_038586953
- Peptide Label: isoform X2
- UniProtKB: A0A8C0SUE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442886   ⟸   XM_038586958
- Peptide Label: isoform X7
- UniProtKB: A0A8C0SUE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442880   ⟸   XM_038586952
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SUE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442882   ⟸   XM_038586954
- Peptide Label: isoform X3
- UniProtKB: A0A8C0SSF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442891   ⟸   XM_038586963
- Peptide Label: isoform X11
- UniProtKB: A0A8I3PJJ3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845034511   ⟸   ENSCAFT00845044041
Ensembl Acc Id: ENSCAFP00845034641   ⟸   ENSCAFT00845044207
Ensembl Acc Id: ENSCAFP00845034378   ⟸   ENSCAFT00845043868
Protein Domains
Polycomb group protein RNA binding region   SAM   SLED

Promoters
RGD ID:13689272
Promoter ID:EPDNEW_C7340
Type:single initiation site
Name:SCML2_1
Description:Scm polycomb group protein like 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X14,436,765 - 14,436,825EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012800 Ensembl
  ENSCAFG00040015949 UniProtKB/TrEMBL
  ENSCAFG00845024846 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00040029366.1 UniProtKB/TrEMBL
  ENSCAFT00040029480.1 UniProtKB/TrEMBL
  ENSCAFT00040029563.1 UniProtKB/TrEMBL
  ENSCAFT00845043868 ENTREZGENE
  ENSCAFT00845043868.1 UniProtKB/TrEMBL
  ENSCAFT00845044041 ENTREZGENE
  ENSCAFT00845044041.1 UniProtKB/TrEMBL
  ENSCAFT00845044207 ENTREZGENE
  ENSCAFT00845044207.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
  3.90.1150.190 UniProtKB/TrEMBL
InterPro Mbt UniProtKB/TrEMBL
  PcG_chromatin_remod_factors UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  SAM_Scm-like UniProtKB/TrEMBL
  SCML2_RBR UniProtKB/TrEMBL
  SLED UniProtKB/TrEMBL
  SLED_sf UniProtKB/TrEMBL
NCBI Gene SCML2 ENTREZGENE
PANTHER POLYCOMB GROUP PROTEIN UniProtKB/TrEMBL
  SEX COMB ON MIDLEG-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam MBT UniProtKB/TrEMBL
  RBR UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
  SLED UniProtKB/TrEMBL
PROSITE MBT UniProtKB/TrEMBL
SMART MBT UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A8C0SSF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SUE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YZK6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PJJ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PRY1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q5N7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:45911 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-25 SCML2  Scm polycomb group protein like 2    sex comb on midleg like 2 (Drosophila)  Symbol and/or name change 5135510 APPROVED
2017-02-28 SCML2  sex comb on midleg like 2 (Drosophila)    sex comb on midleg-like 2 (Drosophila)  Symbol and/or name change 5135510 APPROVED