RNF139 (ring finger protein 139) - Rat Genome Database

Name: RNF139
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: RNF139 (ring finger protein 139) Canis lupus familiaris

Analyze

Symbol:

RNF139

Name:

ring finger protein 139

RGD ID:

12265994

Description:

ENCODES a protein that exhibits metal ion binding (inferred); protease binding (inferred); transferase activity (inferred); INVOLVED IN ERAD pathway (inferred); negative regulation of cell population proliferation (inferred); negative regulation of translation (inferred); ASSOCIATED WITH renal cell carcinoma (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN Derlin-1 retrotranslocation complex (inferred); endoplasmic reticulum (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

E3 ubiquitin-protein ligase RNF139

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	22,560,180 - 22,572,986 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	22,543,543 - 22,572,308 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	22,525,691 - 22,538,625 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	22,902,085 - 22,915,033 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	22,885,460 - 22,915,135 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	22,622,475 - 22,635,430 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	22,732,278 - 22,745,227 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	22,975,117 - 22,988,074 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

renal cell carcinoma (ISO)

trichorhinophalangeal syndrome type I (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ERAD pathway (IEA)

negative regulation of cell population proliferation (IEA)

negative regulation of translation (IEA)

positive regulation of ubiquitin-dependent protein catabolic process (IEA)

protein destabilization (IEA)

protein ubiquitination (IEA)

regulation of ER to Golgi vesicle-mediated transport (IEA)

regulation of protein processing (IEA)

Cellular Component

Derlin-1 retrotranslocation complex (IEA)

endoplasmic reticulum (IEA)

membrane (IEA)

Molecular Function

metal ion binding (IEA)

protease binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IEA)

ubiquitin-like protein transferase activity (IEA)

ubiquitin-protein transferase activity (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RNF139
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	22,560,180 - 22,572,986 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	22,543,543 - 22,572,308 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	22,525,691 - 22,538,625 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	22,902,085 - 22,915,033 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	22,885,460 - 22,915,135 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	22,622,475 - 22,635,430 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	22,732,278 - 22,745,227 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	22,975,117 - 22,988,074 (+)	NCBI		UU_Cfam_GSD_1.0

RNF139
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	124,474,880 - 124,488,618 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	124,474,866 - 124,488,618 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	125,487,121 - 125,500,859 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	125,556,189 - 125,570,040 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	125,556,188 - 125,570,040	NCBI
Celera	8	121,675,173 - 121,688,974 (+)	NCBI		Celera
Cytogenetic Map	8	q24.13	NCBI
HuRef	8	120,812,471 - 120,826,584 (+)	NCBI		HuRef
CHM1_1	8	125,527,264 - 125,541,113 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	125,607,587 - 125,621,646 (+)	NCBI		T2T-CHM13v2.0

Rnf139
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	58,760,975 - 58,774,239 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	58,761,078 - 58,778,906 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	58,889,229 - 58,902,390 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	58,889,229 - 58,907,057 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	58,720,784 - 58,733,945 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	58,719,381 - 58,730,937 (+)	NCBI		MGSCv36	mm8
MGSCv36	15	59,311,394 - 59,322,950 (+)	NCBI		MGSCv36	mm8
Celera	15	60,427,522 - 60,431,604 (+)	NCBI		Celera
Cytogenetic Map	15	D1	NCBI
cM Map	15	25.09	NCBI

Rnf139
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	92,329,201 - 92,340,386 (+)	NCBI		GRCr8
mRatBN7.2	7	90,439,726 - 90,450,911 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	90,436,621 - 90,488,009 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	92,329,252 - 92,340,556 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	94,530,408 - 94,541,712 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	94,357,784 - 94,368,970 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	98,770,840 - 98,782,025 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	98,770,840 - 98,782,025 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	99,371,253 - 99,382,438 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	95,659,052 - 95,661,624 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	95,691,439 - 95,695,125 (+)	NCBI
Celera	7	87,205,052 - 87,216,237 (+)	NCBI		Celera
Cytogenetic Map	7	q33	NCBI

Rnf139
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955540	3,140,649 - 3,153,546 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955540	3,140,649 - 3,153,546 (+)	NCBI	ChiLan1.0	ChiLan1.0

RNF139
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	141,895,692 - 141,908,853 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	117,406,772 - 117,420,595 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	121,158,715 - 121,172,069 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	123,912,589 - 123,924,984 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	123,912,589 - 123,924,720 (+)	Ensembl	panpan1.1		panPan2

Rnf139
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	15,731,213 - 15,742,466 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	23,152,765 - 23,168,571 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	23,157,312 - 23,168,565 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF139
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	15,154,331 - 15,197,511 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	15,157,571 - 15,182,520 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	15,570,618 - 15,592,862 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNF139
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	119,041,885 - 119,055,119 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	119,042,223 - 119,054,486 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	21,131,138 - 21,167,922 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf139
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	30,715,384 - 30,726,862 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	30,715,373 - 30,726,591 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RNF139
162 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038493208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038555477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038619375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038684983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_846679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00845020287 ⟹ ENSCAFP00845015901

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	13	22,885,460 - 22,914,193 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845020311 ⟹ ENSCAFP00845015920

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	13	22,902,107 - 22,915,135 (+)	Ensembl

RefSeq Acc Id:

XM_038493208 ⟹ XP_038349136

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	13	22,622,475 - 22,635,430 (+)	NCBI

RefSeq Acc Id:

XM_038555477 ⟹ XP_038411405

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	13	22,975,117 - 22,988,074 (+)	NCBI

RefSeq Acc Id:

XM_038619375 ⟹ XP_038475303

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	13	22,732,278 - 22,745,227 (+)	NCBI

RefSeq Acc Id:

XM_038684983 ⟹ XP_038540911

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	13	22,902,085 - 22,915,033 (+)	NCBI

RefSeq Acc Id:

XM_846679 ⟹ XP_851772

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	13	22,560,180 - 22,572,986 (+)	NCBI
Dog10K_Boxer_Tasha	13	22,525,691 - 22,538,625 (+)	NCBI

Sequence:

show sequence

CCCTGCCCGGCTCGCCCAGCCCCGGTGTGGCAGCGGCTCATGGCGGCGGTGGGGCCCCCGCAGC
AGCAGGTGCGGATGGCCCATCAGCAGGTCTGGGCGGCGCTCGAGGTGGCGCTCCGGGTGCCGTG
CCTCTACATCATCGACGCCATCTTCAACTCCTACTACGATTCCAGCCAAAGCCGGTTCTGCATC
GGGCTCCAGATCGTCCTCCGGCTCCTCGGTATATTTGTATCCAGTATTGTTCTGATCTTGTCAC
AACGATCACTTTTCAAGTTTTACATGTACAGTTCAGCCTTTCTATTAGCTGCAACTTCAGTGTT
GGTAAATTATTATGCTTCTTTGCACATTGACTTCTATGGTGCCTACAACACATCAGCTTTCGGA
ATTGAGCTGCTTCCTCGAAAAGGGCCCTCGCTATGGATGGCACTCATCGTTCTGCAGCTAACCT
TAGGAATTGGATACATTACACTACTACAAATTCATTCCATCTATTCACAATTAATTATTTTGGA
TCTCTTGATTCCTGTGATAGGTTTAATCACAGAGCTGCCATTACACATCCGAGAGACTTTAGTT
TTTACTTCTTCCTTGATTCTTACATTAAACACAGTGCTTGTCTTGGCAGTGAAACTTAAGTGGT
TTTATTATTCCACACGATATGTTTATCTTTTAGTGAGGCACATGTATCGAATTTATGGATTACA
GTTATTAATGGAGGACACATGGAAGAGGATTCGTTTTCCAGATATACTGAGAGTCTTTTGGCTA
ACAAGAATTACAGCTCAGGCTACAGTGTTGATGTACATTTTAAGGATGGCAAATGAAACTGATT
CCTTCTTTATTTCTTGGGATGATTTCTGGGACCTCATTTGCAATCTTATAATTAGTGGCTGTGA
TTCTACACTAACTGTACTGGGCATGAGTGCTGTAATTTCCTCAATAGCCCATTATTTGGGCCTT
GGAATATTGGCCTTTATTGGATCAACTGAAGAAGACGACAGGAGGCTTGGCTTCGTAGCACCTG
TTTTATTTTTTATTTTGGCTCTTCAGACCGGCTTAAGTGGGCTAAGACCAGAAGAGAGACTTAT
TCGCTTAAGTAGAAACATGTGCCTTTTATTAACTGCAGTCCTGCATTTCATCCACGGAATGACA
GACCCTGTATTAATGTCTCTCAGTGCCTCTCATGTGTCATCTTTCCGTAGACATTTTCCTGTGC
TCTTTGTCTCTGCTTGCCTGTTTATTCTTCCTGTTTTACTCAGCTATGTTCTTTGGCATCACTA
TGCACTAAATACATGGTTGTTTGCAGTTACAGCCTTTTGTGTGGAACTCTGCTTAAAAGTAATT
GTTTCTCTCACTGTGTATACGTTATTCATGATTGATGGCTATTATAATGTCCTTTGGGAAAAGC
TTGATGATTATGTCTACTATGTTCGTTCAACAGGCAATATTATTGAATTTATATTTGGAGTAGT
AATGTTTGGAAATGGGGCTTACACTATGATGTTTGAGTCAGGAAGTAAAATTCGAGCTTGTATG
ATGTGTCTACATGCATATTTTAACATCTACTTACAAGCAAAAAATGGCTGGAAGACATTCATGA
ATCGTAGGACTGCTGTTAAGAAAATTAATTCACTTCCTGAAATAAAAGGGAGCCGCTTACGAGA
AATAGATGATGTATGTGCAATCTGCTATCATGAGTTTACAACATCTGCTCGCATCACACCATGT
AATCATTATTTCCACGCACTTTGCCTTCGGAAATGGCTGTACATCCAAGATACTTGTCCAATGT
GCCATCAGAAAGTGTACATTGAAGATGATATTAAGGATAATTCAAATATATCCAACAACAATGG
GTTTATTGCACCCAATGAAAATCCAGAGGAAGCTGTAAGAGAAGCTGCTGCTGAATCTGACAGG
GAATTGAACGAAGAAGACAGTACAGATTGTGATGATGATGTTCAAAGAGAAAGAAATGGAGTGA
TTCAACACACAGGCCCAGCAGCTGAAGAACTTAATGATGATACTGACTGATTAAAATAGCATTT
ACTAATCATTGAGGTTATTTGTTTAAAATTCAGTTCATCCAAAATGGAGTAATATGCTTCACTT
CAGTGTGTAACCAAGCACAAAAACAGTATCCATGTTGAATCTGTGAATGGTTTTCCGTTTACTG
TGATGTGCTACTGTAAATATACCTCTTTAATTACTTCTGGTCTCTTTGGTGACCTATTTAAATT
TGTGTACATTATTGTACATAGAATAAAATGTTTTCACGTTTTTATGACAAAATTTGAACAAATA
GCTTTTTAATAGATGTAATGATAATACAGTGCGTCAAGTGTGCCAAAGATTCCTCAATGAAAGC
ATATAAAAGTATCTAACCCTGGACCCTAGTTTTTCTTTAAAATGGGTGGAAGAATGAAAGTATG
AATCAAAGGAAACCATATTAAGGAAATAAAATAATTTGGACCACAGGATGAGGCTATATGTAGA
ATATTTTAAAATGAAGGAGGAAATAGGCTGCCAGAAGAGACTTTTTTGAAATTTGAGTGTAGCA
TGTGGTTGAGCTGGGTTCGAAAGTCATGGTTCAGAGATTGTGTAAGAGTTGAAAAACAGGCTTT
TATCAACTAAACTTTGGTATAAAAGCCAGAATGTGCTAATTGTTTAATTTTGATGTAAATAAAA
CCAGTATATTTGTTGGCCATTCTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038349136	(Get FASTA)	NCBI Sequence Viewer
	XP_038411405	(Get FASTA)	NCBI Sequence Viewer
	XP_038475303	(Get FASTA)	NCBI Sequence Viewer
	XP_038540911	(Get FASTA)	NCBI Sequence Viewer
	XP_851772	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000001469.5
	ENSCAFP00000063598.2
	ENSCAFP00030013233.1
	ENSCAFP00845015901.1
	ENSCAFP00845015920
	ENSCAFP00845015920.1

RefSeq Acc Id:

XP_851772 ⟸ XM_846679

- UniProtKB:

A0A8I3NIT9 (UniProtKB/TrEMBL), A0A8P0PCF9 (UniProtKB/TrEMBL), A0A8C0MQ78 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAVGPPQQQVRMAHQQVWAALEVALRVPCLYIIDAIFNSYYDSSQSRFCIGLQIVLRLLGIFV
SSIVLILSQRSLFKFYMYSSAFLLAATSVLVNYYASLHIDFYGAYNTSAFGIELLPRKGPSLWM
ALIVLQLTLGIGYITLLQIHSIYSQLIILDLLIPVIGLITELPLHIRETLVFTSSLILTLNTVL
VLAVKLKWFYYSTRYVYLLVRHMYRIYGLQLLMEDTWKRIRFPDILRVFWLTRITAQATVLMYI
LRMANETDSFFISWDDFWDLICNLIISGCDSTLTVLGMSAVISSIAHYLGLGILAFIGSTEEDD
RRLGFVAPVLFFILALQTGLSGLRPEERLIRLSRNMCLLLTAVLHFIHGMTDPVLMSLSASHVS
SFRRHFPVLFVSACLFILPVLLSYVLWHHYALNTWLFAVTAFCVELCLKVIVSLTVYTLFMIDG
YYNVLWEKLDDYVYYVRSTGNIIEFIFGVVMFGNGAYTMMFESGSKIRACMMCLHAYFNIYLQA
KNGWKTFMNRRTAVKKINSLPEIKGSRLREIDDVCAICYHEFTTSARITPCNHYFHALCLRKWL
YIQDTCPMCHQKVYIEDDIKDNSNISNNNGFIAPNENPEEAVREAAAESDRELNEEDSTDCDDD
VQRERNGVIQHTGPAAEELNDDTD

hide sequence

RefSeq Acc Id:

XP_038349136 ⟸ XM_038493208

RefSeq Acc Id:

XP_038475303 ⟸ XM_038619375

RefSeq Acc Id:	XP_038540911 ⟸ XM_038684983
- UniProtKB:	A0A8I3NIT9 (UniProtKB/TrEMBL), A0A8P0PCF9 (UniProtKB/TrEMBL), A0A8C0MQ78 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038411405 ⟸ XM_038555477
- UniProtKB:	A0A8C0MQ78 (UniProtKB/TrEMBL), A0A8I3NIT9 (UniProtKB/TrEMBL), A0A8P0PCF9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845015901 ⟸ ENSCAFT00845020287

Ensembl Acc Id:

ENSCAFP00845015920 ⟸ ENSCAFT00845020311

Protein Domains

RING-type SAM-dependent methyltransferase TRM5/TYW2-type

Promoters

RGD ID:

13685603

Promoter ID:

EPDNEW_C3671

Type:

multiple initiation site

Name:

RNF139_1

Description:

ring finger protein 139

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	13	22,560,197 - 22,560,257	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000029985	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030008268	UniProtKB/TrEMBL
	ENSCAFG00845011445	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000001597.5	UniProtKB/TrEMBL
	ENSCAFT00000084810.2	UniProtKB/TrEMBL
	ENSCAFT00030015175.1	UniProtKB/TrEMBL
	ENSCAFT00845020287.1	UniProtKB/TrEMBL
	ENSCAFT00845020311	ENTREZGENE
	ENSCAFT00845020311.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	3.40.50.150	UniProtKB/TrEMBL
	Met-10+ protein-like domains	UniProtKB/TrEMBL
InterPro	HRD1_E3_ubiq-ligases	UniProtKB/TrEMBL
	MeTrfase_TRM5/TYW2	UniProtKB/TrEMBL
	SAM-dependent_MTases_sf	UniProtKB/TrEMBL
	TRC8_N_dom	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING-CH	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	cfa:609422	UniProtKB/TrEMBL
NCBI Gene	RNF139	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF139	UniProtKB/TrEMBL
	RING ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	Met_10	UniProtKB/TrEMBL
	TRC8_N	UniProtKB/TrEMBL
	zf-RING_2	UniProtKB/TrEMBL
PROSITE	SAM_MT_TRM5_TYW2	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
SMART	RING	UniProtKB/TrEMBL
	RINGv	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF53335	UniProtKB/TrEMBL
UniProt	A0A8C0MQ78	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NIT9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3RYJ6_CANLF	UniProtKB/TrEMBL
	A0A8P0N481_CANLF	UniProtKB/TrEMBL
	A0A8P0PCF9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:45632	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM