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Gene: HOXB13 (homeobox B13) Canis lupus familiaris

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Symbol:

HOXB13

Name:

homeobox B13

RGD ID:

12254298

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); INVOLVED IN prostate gland development (ortholog); response to testosterone (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); cervical cancer (ortholog); ductal carcinoma in situ (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); transcription regulator complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

homeobox protein Hox-B13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HOXB13 (homeobox B13)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Hoxb13 (homeobox B13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Hoxb13 (homeo box B13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hoxb13 (homeobox B13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HOXB13 (homeobox B13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hoxb13 (homeobox B13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HOXB13 (homeobox B13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HOXB13 (homeobox B13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hoxb13 (homeobox B13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	24,958,020 - 24,961,353 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	24,959,183 - 24,961,588 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	24,420,615 - 24,425,192 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	25,751,224 - 25,755,801 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	25,753,220 - 25,755,912 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	24,519,247 - 24,523,824 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	24,779,867 - 24,784,444 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	24,908,387 - 24,912,969 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HOXB13	Dog	Breast Neoplasms		ISO	HOXB13 (Homo sapiens)	9068941	DNA:hypermethylation	RGD	PMID:19250546 and REF_RGD_ID:2314726
HOXB13	Dog	Breast Neoplasms	disease_progression	ISO	HOXB13 (Homo sapiens)	9068941		RGD	PMID:17453342 and REF_RGD_ID:2314727
HOXB13	Dog	cervical cancer		ISO	HOXB13 (Homo sapiens)	9068941	mRNA:increased expression:uterine cervix	RGD	PMID:16803519 and REF_RGD_ID:2314728
HOXB13	Dog	ductal carcinoma in situ		ISO	HOXB13 (Homo sapiens)	9068941	DNA:hypermethylation	RGD	PMID:19250546 and REF_RGD_ID:2314726
HOXB13	Dog	endometrial cancer		ISO	HOXB13 (Homo sapiens)	9068941		RGD	PMID:15756448 and REF_RGD_ID:2314730
HOXB13	Dog	renal cell carcinoma	disease_progression	ISO	HOXB13 (Homo sapiens)	9068941	DNA:hypermethylation	RGD	PMID:16278676 and REF_RGD_ID:2314729

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HOXB13	Dog	Familial Prostate Cancer		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Prostate cancer susceptibility	ClinVar	PMID:15964834 more ...
HOXB13	Dog	hereditary breast ovarian cancer syndrome		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Breast and/or ovarian cancer	ClinVar	PMID:15964834 more ...
HOXB13	Dog	hereditary breast ovarian cancer syndrome		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15964834 more ...
HOXB13	Dog	Hereditary Neoplastic Syndromes		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15964834 more ...
HOXB13	Dog	Hereditary Neoplastic Syndromes		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15964834 more ...
HOXB13	Dog	Hereditary Neoplastic Syndromes		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15964834 more ...
HOXB13	Dog	Hereditary Neoplastic Syndromes		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15964834 more ...
HOXB13	Dog	Hereditary Neoplastic Syndromes		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15964834 more ...
HOXB13	Dog	Hereditary Neoplastic Syndromes		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15964834 more ...
HOXB13	Dog	Hereditary Neoplastic Syndromes		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15964834 more ...
HOXB13	Dog	Hereditary Neoplastic Syndromes		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15964834 more ...
HOXB13	Dog	pancreatic carcinoma		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar Annotator: match by term: PANCREATIC CARCINOMA	ClinVar	PMID:15964834 more ...
HOXB13	Dog	prostate cancer		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar Annotator: match by term: PROSTATE CANCER and SUSCEPTIBILITY TO	ClinVar	PMID:15964834 more ...
HOXB13	Dog	Prostate Cancer, Hereditary, 1		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Prostate cancer more ...	ClinVar	PMID:17576681 more ...
HOXB13	Dog	Prostate Cancer, Hereditary, 9		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15964834 more ...
HOXB13	Dog	stomach cancer		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastric cancer	ClinVar	PMID:28492532 and PMID:36988593
HOXB13	Dog	trichodontoosseous syndrome		ISO	HOXB13 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Tricho-dento-osseous syndrome	ClinVar	PMID:25741868

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HOXB13	Dog	Breast Neoplasms		ISO	HOXB13 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:24239177
HOXB13	Dog	melanoma		ISO	HOXB13 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:17145863
HOXB13	Dog	Neoplasm Invasiveness		ISO	HOXB13 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:26213588
HOXB13	Dog	Prostatic Neoplasms		ISO	HOXB13 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:23104005 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HOXB13	Dog	Prostate Cancer, Hereditary, 9		ISO	HOXB13 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HOXB13	Dog	angiogenesis	involved_in	IEA	UniProtKB:Q92826 and ensembl:ENSP00000290295	150520179		Ensembl	GO_REF:0000107
HOXB13	Dog	epithelial cell maturation involved in prostate gland development	acts_upstream_of_or_within	IEA	UniProtKB:P70321 and ensembl:ENSMUSP00000056315	150520179		Ensembl	GO_REF:0000107
HOXB13	Dog	morphogenesis of an epithelium	acts_upstream_of_or_within	IEA	UniProtKB:P70321 and ensembl:ENSMUSP00000056315	150520179		Ensembl	GO_REF:0000107
HOXB13	Dog	negative regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q92826 and ensembl:ENSP00000290295	150520179		Ensembl	GO_REF:0000107
HOXB13	Dog	prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis	acts_upstream_of_or_within	IEA	UniProtKB:P70321 and ensembl:ENSMUSP00000056315	150520179		Ensembl	GO_REF:0000107
HOXB13	Dog	prostate gland development		ISO	Hoxb13 (Rattus norvegicus)	9068941		RGD	PMID:17138648 and REF_RGD_ID:11354895
HOXB13	Dog	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR017970	150520179		InterPro	GO_REF:0000002
HOXB13	Dog	regulation of growth	acts_upstream_of_or_within	IEA	UniProtKB:P70321 and ensembl:ENSMUSP00000056315	150520179		Ensembl	GO_REF:0000107
HOXB13	Dog	regulation of transcription by RNA polymerase II	involved_in	IBA	MGI:96173 more ...	150520179		GO_Central	GO_REF:0000033
HOXB13	Dog	response to testosterone		ISO	Hoxb13 (Rattus norvegicus)	9068941		RGD	PMID:17138648 more ...

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HOXB13	Dog	nucleoplasm	located_in	IEA	UniProtKB:Q92826 and ensembl:ENSP00000290295	150520179		Ensembl	GO_REF:0000107
HOXB13	Dog	nucleus	located_in	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
HOXB13	Dog	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
HOXB13	Dog	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
HOXB13	Dog	transcription regulator complex	part_of	IEA	UniProtKB:P70321 and ensembl:ENSMUSP00000056315	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
HOXB13	Dog	DNA binding	enables	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
HOXB13	Dog	DNA binding	enables	IEA	InterPro:IPR001356	150520179		InterPro	GO_REF:0000002
HOXB13	Dog	DNA binding	enables	IEA	UniProtKB-KW:KW-0238 and UniProtKB-KW:KW-0371	150520179		UniProt	GO_REF:0000043
HOXB13	Dog	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IEA	InterPro:IPR017970	150520179		InterPro	GO_REF:0000002
HOXB13	Dog	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IBA	MGI:96173 more ...	150520179		GO_Central	GO_REF:0000033
HOXB13	Dog	DNA-binding transcription repressor activity, RNA polymerase II-specific	enables	IEA	UniProtKB:Q92826 and ensembl:ENSP00000290295	150520179		Ensembl	GO_REF:0000107
HOXB13	Dog	methyl-CpG binding	enables	IEA	UniProtKB:Q92826 and ensembl:ENSP00000290295	150520179		Ensembl	GO_REF:0000107
HOXB13	Dog	protein binding	enables	ISO	PR:Q60954	9068941	PMID:9343407	MGI	PMID:9343407
HOXB13	Dog	protein binding	enables	ISO	UniProtKB:P17252 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
HOXB13	Dog	RNA polymerase II cis-regulatory region sequence-specific DNA binding	enables	IBA	MGI:96173 more ...	150520179		GO_Central	GO_REF:0000033
HOXB13	Dog	sequence-specific DNA binding	enables	IEA	UniProtKB:Q92826 and ensembl:ENSP00000290295	150520179		Ensembl	GO_REF:0000107
HOXB13	Dog	sequence-specific double-stranded DNA binding	enables	IEA	UniProtKB:Q92826 and ensembl:ENSP00000290295	150520179		Ensembl	GO_REF:0000107

PMID:22301074	PMID:30032202

HOXB13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	24,958,020 - 24,961,353 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	24,959,183 - 24,961,588 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	24,420,615 - 24,425,192 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	25,751,224 - 25,755,801 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	25,753,220 - 25,755,912 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	24,519,247 - 24,523,824 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	24,779,867 - 24,784,444 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	24,908,387 - 24,912,969 (-)	NCBI		UU_Cfam_GSD_1.0

HOXB13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	48,724,763 - 48,728,750 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	48,724,763 - 48,728,750 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	46,802,125 - 46,806,112 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	44,157,124 - 44,161,110 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	44,158,866 - 44,161,084	NCBI
Celera	17	43,256,271 - 43,260,259 (-)	NCBI		Celera
Cytogenetic Map	17	q21.32	NCBI
HuRef	17	42,171,017 - 42,175,003 (-)	NCBI		HuRef
CHM1_1	17	46,868,110 - 46,872,096 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	49,588,364 - 49,592,351 (-)	NCBI		T2T-CHM13v2.0

Hoxb13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	96,085,142 - 96,087,436 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	96,085,142 - 96,088,273 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	96,194,316 - 96,196,610 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	96,194,316 - 96,197,447 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	96,055,675 - 96,057,913 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	96,010,451 - 96,012,689 (+)	NCBI		MGSCv36	mm8
Celera	11	105,845,408 - 105,847,646 (+)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	59.63	NCBI

Hoxb13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	81,657,074 - 81,659,347 (+)	NCBI		GRCr8
mRatBN7.2	10	81,160,498 - 81,162,777 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	81,160,498 - 81,162,777 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	86,109,811 - 86,112,084 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	85,607,837 - 85,610,110 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	81,000,052 - 81,002,325 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	84,031,955 - 84,034,228 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	84,031,955 - 84,034,228 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	83,834,616 - 83,836,889 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	84,925,520 - 84,927,793 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	84,939,948 - 84,942,992 (+)	NCBI
Celera	10	79,927,218 - 79,929,491 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Hoxb13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	12,536,415 - 12,538,169 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	12,536,415 - 12,538,169 (+)	NCBI	ChiLan1.0	ChiLan1.0

HOXB13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	16,373,643 - 16,377,926 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	18,339,516 - 18,343,512 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	8,807,988 - 8,810,362 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	8,994,224 - 8,996,598 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	8,994,224 - 8,996,598 (+)	Ensembl	panpan1.1		panPan2

Hoxb13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	24,384,231 - 24,386,567 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	12,688,559 - 12,690,908 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	12,688,572 - 12,690,908 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HOXB13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	24,947,687 - 24,950,714 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	24,948,307 - 24,950,661 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	24,904,057 - 24,905,982 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HOXB13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	69,137,561 - 69,141,615 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	69,137,585 - 69,139,382 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	40,235,168 - 40,239,485 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hoxb13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	5,198,751 - 5,200,961 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	5,198,805 - 5,201,079 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in HOXB13
20 total Variants

Assembly: CanFam3.1

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
9	24960850	24960851	G	T	snv	Chinese indigenous dogs (YJ9), Tibetan Mastiff (TM7)	View more Information

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	31	20	12	14	10


RefSeq Transcripts	XM_038485815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038547593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038611568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038676766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_548180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000026707 ⟹ ENSCAFP00000024813

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	24,959,183 - 24,961,588 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845017553 ⟹ ENSCAFP00845013662

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	25,753,220 - 25,755,912 (-)	Ensembl

RefSeq Acc Id:

XM_038485815 ⟹ XP_038341743

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	24,519,247 - 24,523,824 (-)	NCBI

RefSeq Acc Id:

XM_038547593 ⟹ XP_038403521

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	24,908,387 - 24,912,969 (-)	NCBI

RefSeq Acc Id:

XM_038611568 ⟹ XP_038467496

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	24,779,867 - 24,784,444 (-)	NCBI

RefSeq Acc Id:

XM_038676766 ⟹ XP_038532694

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	25,751,224 - 25,755,801 (-)	NCBI

RefSeq Acc Id:

XM_548180 ⟹ XP_548180

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	24,958,020 - 24,961,353 (-)	NCBI
Dog10K_Boxer_Tasha	9	24,420,615 - 24,425,192 (-)	NCBI

Sequence:

show sequence

CTGGGAGCGATTTAAAACGCCTTGGATTCCCGGGGCCTGGGTGGGGAGAGACGGCTGGGTGCCCCCCGGATCCCCCCGCCCCAGCGCCCCATGAGCGGACCCTCGGCCCCATGGAGCCCGGCGACTAC
GCCACCCTGGACGGGGCCAAGGACCTGGAAGGCTTGTCGGTAGTGGGAGGGGGTCGGAATCTCGTGGCCCCGTCGCCGCTGGCCACCCACCCGGCCGCGGCGCCTCCGCTGATGCCCGCTGTCAGCTA
CGCGCCGCTGGATCTGCCGGGCCCCGCGGAACCGCCGAAGCAGTGCCACCCTTGCCCCGGGGTGCCCCAGGGGGCGGCCCCGGCTCCGGTGCCTTACGGCTACTTTGGAGGCGGGTACTACTCCTGCC
GGGTGGCCCGGAGCTCGCTGAAACCCTGTGCCCAGGCGGCCACCCTCGCTGCCTACCCCGCGGAGACGGCCACGGCCGGGGAGGAGTACCCCAGCCGACCCACCGAGTTTGCCTTCTATCCTGGGTAC
CCGGGACCCTACCAGCCAATGGCCAGTTACCTGGATGTGTCGGTGGTGCAGACTCTGGGAGCCCCCGGGGAGCCTCGCCACGACTCCCTGCTGCCTGTGGACAGTTACCAGCCCTGGGCCCTCACCGG
TGGCTGGAACGGCCAGATGTGTTGCCAGGGGGAGCAGAACCCACCCAGTGCCTTCTGGAAGGCAGCATTTGCAGAGTCAGGCACACAGCACCCTCCTGATGGTTGTGCCTTCCGACGTGGCCGTAAGA
AGCGCATTCCTTACAGCAAGGGGCAGTTGCGGGAGCTGGAGCGCGAGTATTCAGCTAACAAGTTCATCACCAAGGACAAGAGGCGTAAGATCTCTGCGGCCACCAGCCTTTCAGAGCGCCAGATCACC
ATCTGGTTTCAGAACCGCCGGGTTAAGGAGAAGAAAGTCCTTGCCAAGGTCAAGACCAGCACTACTCTGTGAGGGAGATCCCTGGCTGGGGGAGTGGGGGAGAAATGGAAGTATCCTAGGGAAACCAG
GAGCCTGCCAGCGCCAGGCTGGAGCACAGGACTCTGCCGAGGGGCTCCCAGAGGTTGCACTCTTCCCAGGCCACAGCTCCTGGGCTGTTCCTCAGGGATGGCCTGGGTGCCCCCATATGTTTTAGGGA
GCCAGTGAGGCCCAGAGTTACAGTCCAATCCACCAGAGCCACATACCACCCACAGGACCTGTCGCCAGTCACAATCATTCATCCTGGTAGTGGTAATAGTCACCATAACCAGTATGAGTTGCCATGAT
AATTAGTTTCAAATTTTTATCTAGAGCTCTGAAGAGCACTTGAGAAACTGCTTGCATGGATTGAACTGATAATGAATAAACTTGGAGGGAGACCCAAGGCAGGGAAGCTTCCTTTGCATCCACATCCA
TTTCCAAATCCTGTCCCCCACCCCAGTGATTGCAGCAGATAGGAGAAAAGGCAGATTCACTCCTGTGACTACCATTGCTCATTTGGCATTTTTCTAAGATGACCCCTGGGCAGGATGGACAACACTGG
GGGGTACCTCTCCCTCCCTCCCTGCCCACACCCTGGGTTGTATGCTGAGGTCTCAGAAATCCCATCCTTAACTCTTAGATTTTGTCCTTGTGTGAAAATGAAGCCAGTGAACTGCCCTCCTGAGTCCT
CCTGCCTCCAGAAAAACTGAGTTTGAGAAAGCTCCTGGATAATTCATCATCTCTCATTTCCTCCCCTAAACTTTCCAAGTCTTCCCTTAACAATCCTGGTGGTTCTGTCCAGGTTATAGTTCATTGGG
GCATTTGGGAGTTGCATGAAATAGGTATTTGTGGCCTTGTAGACGTCCCCCTCCCAGGCACAAATAGTTACAGAACTAGGGAGTAGAACGCTACCCTATTGGCAGGCACATCACAAACACGCTGGAAT
AGCCAGGCTGGAAAGAAAACCAGAAAATGGCCCTTCACCACCCATTCTCCCTCTGCTTTGCTTCTACTTGACATCAGGAGAAGTTGTGGGTCCCAAGCCTGGGAGATGGGTCAGGCCCCTTTGTGAGT
GAAAAAACAGTGGGTGGCAGAAGCGCAAAGACCCAGGTGAGGCGTCTTAGGCAAGAGTGGCTGCAGATCTCTTTCCTTTTCACTTTGTGCTGGTTTGGTCCAACTACCCTGAATCCTGGGT

hide sequence


Protein RefSeqs	XP_038341743	(Get FASTA)	NCBI Sequence Viewer
	XP_038403521	(Get FASTA)	NCBI Sequence Viewer
	XP_038467496	(Get FASTA)	NCBI Sequence Viewer
	XP_038532694	(Get FASTA)	NCBI Sequence Viewer
	XP_548180	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000024813.2
	ENSCAFP00030002922.1
	ENSCAFP00040008340.1
	ENSCAFP00845013662
	ENSCAFP00845013662.1

RefSeq Acc Id:

XP_548180 ⟸ XM_548180

- UniProtKB:

A0A8C0LBL4 (UniProtKB/TrEMBL), A0A8C0LWY6 (UniProtKB/TrEMBL), A0A8I3RVJ4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEPGDYATLDGAKDLEGLSVVGGGRNLVAPSPLATHPAAAPPLMPAVSYAPLDLPGPAEPPKQCHPCPGVPQGAAPAPVPYGYFGGGYYSCRVARSSLKPCAQAATLAAYPAETATAGEEYPSRPTEF
AFYPGYPGPYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQPWALTGGWNGQMCCQGEQNPPSAFWKAAFAESGTQHPPDGCAFRRGRKKRIPYSKGQLRELEREYSANKFITKDKRRKISAATSL
SERQITIWFQNRRVKEKKVLAKVKTSTTL

hide sequence

Ensembl Acc Id:

ENSCAFP00000024813 ⟸ ENSCAFT00000026707

RefSeq Acc Id:

XP_038341743 ⟸ XM_038485815

RefSeq Acc Id:

XP_038467496 ⟸ XM_038611568

RefSeq Acc Id:	XP_038532694 ⟸ XM_038676766
- UniProtKB:	A0A8C0LBL4 (UniProtKB/TrEMBL), A0A8C0LWY6 (UniProtKB/TrEMBL), A0A8I3RVJ4 (UniProtKB/TrEMBL)

Protein Domains

Homeobox

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000016870	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030001808	UniProtKB/TrEMBL
	ENSCAFG00040005153	UniProtKB/TrEMBL
	ENSCAFG00845009992	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000026707.4	UniProtKB/TrEMBL
	ENSCAFT00030003293.1	UniProtKB/TrEMBL
	ENSCAFT00040009624.1	UniProtKB/TrEMBL
	ENSCAFT00845017553	ENTREZGENE
	ENSCAFT00845017553.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	AP_axis_regulatory_Homeobox	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	HoxA13_N	UniProtKB/TrEMBL
KEGG Report	cfa:491060	UniProtKB/TrEMBL
NCBI Gene	HOXB13	ENTREZGENE
PANTHER	HOMEOBOX PROTEIN HOX-B13	UniProtKB/TrEMBL
	SEGMENTATION PROTEIN FUSHI TARAZU-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
	HoxA13_N	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A8C0LBL4	ENTREZGENE
	A0A8C0LWY6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3RVJ4	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:41750	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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