OTUB1 (OTU deubiquitinase, ubiquitin aldehyde binding 1) - Rat Genome Database

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Gene: OTUB1 (OTU deubiquitinase, ubiquitin aldehyde binding 1) Canis lupus familiaris
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Symbol: OTUB1
Name: OTU deubiquitinase, ubiquitin aldehyde binding 1
RGD ID: 12224315
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); cysteine-type peptidase activity (inferred); deNEDDylase activity (inferred); INVOLVED IN cellular response to interleukin-1 (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH high grade glioma (ortholog); IgA glomerulonephritis (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: OTU domain, ubiquitin aldehyde binding 1; ubiquitin thioesterase OTUB1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: LOC476039  
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1340,225,531 - 40,226,507 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl340,225,474 - 40,226,612 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,034,387 - 53,041,481 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,640,620 - 51,647,898 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,078,482 - 54,086,513 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,078,490 - 54,086,562 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,181,634 - 53,188,897 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,757,302 - 52,764,567 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,541,625 - 53,548,912 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
OTUB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1340,225,531 - 40,226,507 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl340,225,474 - 40,226,612 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,034,387 - 53,041,481 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,640,620 - 51,647,898 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,078,482 - 54,086,513 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,078,490 - 54,086,562 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,181,634 - 53,188,897 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,757,302 - 52,764,567 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,541,625 - 53,548,912 (-)NCBIUU_Cfam_GSD_1.0
OTUB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381163,986,438 - 63,998,412 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1163,985,853 - 64,001,811 (+)EnsemblGRCh38hg38GRCh38
GRCh371163,753,910 - 63,765,884 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,509,901 - 63,522,468 (+)NCBINCBI36Build 36hg18NCBI36
Build 341163,510,460 - 63,522,463NCBI
Celera1161,080,100 - 61,092,667 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,082,024 - 60,094,513 (+)NCBIHuRef
CHM1_11163,636,649 - 63,649,224 (+)NCBICHM1_1
T2T-CHM13v2.01163,976,132 - 63,988,115 (+)NCBIT2T-CHM13v2.0
Otub1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,175,571 - 7,183,649 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,175,567 - 7,183,681 (-)EnsemblGRCm39 Ensembl
GRCm38197,198,206 - 7,206,284 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,198,202 - 7,206,316 (-)EnsemblGRCm38mm10GRCm38
MGSCv37197,272,696 - 7,280,774 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36197,265,250 - 7,273,328 (-)NCBIMGSCv36mm8
Celera196,975,017 - 6,983,084 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.27NCBI
Otub1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,816,400 - 213,824,679 (-)NCBIGRCr8
mRatBN7.21204,387,215 - 204,395,495 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,387,215 - 204,395,483 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,737,134 - 212,745,426 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,832,446 - 219,840,723 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,523,497 - 212,531,775 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,451,674 - 222,459,952 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,451,674 - 222,459,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,442,242 - 229,450,521 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,871,581 - 209,879,518 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,030,010 - 210,044,513 (-)NCBI
Celera1201,919,929 - 201,928,118 (-)NCBICelera
Cytogenetic Map1q43NCBI
Otub1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542221,047,184 - 21,055,616 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542221,047,184 - 21,055,596 (-)NCBIChiLan1.0ChiLan1.0
OTUB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,212,054 - 65,225,024 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,257,229 - 66,270,198 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,342,820 - 59,355,386 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,690,542 - 62,702,739 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1162,690,542 - 62,706,542 (+)Ensemblpanpan1.1panPan2
Otub1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,712,639 - 8,721,576 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365995,153,993 - 5,173,046 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365995,154,988 - 5,163,919 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OTUB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,087,829 - 8,095,609 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,088,528 - 8,095,555 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,205,414 - 7,212,452 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OTUB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,247,260 - 10,271,026 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038107,583,188 - 107,596,053 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Otub1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,278,572 - 22,289,640 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,278,572 - 22,289,576 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in OTUB1
21 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000021068   ⟹   ENSCAFP00000055110
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl340,225,474 - 40,226,612 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000023395   ⟹   ENSCAFP00000021726
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1853,034,387 - 53,041,481 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845054741   ⟹   ENSCAFP00845043058
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1854,078,490 - 54,086,562 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845054745   ⟹   ENSCAFP00845043062
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1854,078,490 - 54,086,562 (-)Ensembl
RefSeq Acc Id: NM_001251947   ⟹   NP_001238876
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1340,225,531 - 40,226,507 (-)NCBI
Dog10K_Boxer_Tasha1851,640,620 - 51,647,898 (-)NCBI
ROS_Cfam_1.01854,079,247 - 54,086,513 (-)NCBI
UMICH_Zoey_3.11853,181,634 - 53,188,897 (-)NCBI
UNSW_CanFamBas_1.01852,757,302 - 52,764,567 (-)NCBI
UU_Cfam_GSD_1.01853,541,625 - 53,548,912 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038423483   ⟹   XP_038279411
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01854,078,482 - 54,085,891 (-)NCBI
RefSeq Acc Id: NP_001238876   ⟸   NM_001251947
- UniProtKB: A0A8C0SNM8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000055110   ⟸   ENSCAFT00000021068
Ensembl Acc Id: ENSCAFP00000021726   ⟸   ENSCAFT00000023395
RefSeq Acc Id: XP_038279411   ⟸   XM_038423483
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SNM8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845043062   ⟸   ENSCAFT00845054745
Ensembl Acc Id: ENSCAFP00845043058   ⟸   ENSCAFT00845054741
Protein Domains
OTU


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013279 Ensembl
  ENSCAFG00000014729 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030009988 UniProtKB/TrEMBL
  ENSCAFG00040015186 UniProtKB/TrEMBL
  ENSCAFG00845030788 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000023395.5 UniProtKB/TrEMBL
  ENSCAFT00000106338.1 UniProtKB/TrEMBL
  ENSCAFT00030018570.1 UniProtKB/TrEMBL
  ENSCAFT00030018598.1 UniProtKB/TrEMBL
  ENSCAFT00040028041.1 UniProtKB/TrEMBL
  ENSCAFT00040028105.1 UniProtKB/TrEMBL
  ENSCAFT00040028146.1 UniProtKB/TrEMBL
  ENSCAFT00845054741 ENTREZGENE
  ENSCAFT00845054741.1 UniProtKB/TrEMBL
  ENSCAFT00845054745.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1300.20 UniProtKB/TrEMBL
  3.30.200.60 UniProtKB/TrEMBL
InterPro OTU_dom UniProtKB/TrEMBL
  Otubain UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C65_otubain UniProtKB/TrEMBL
  Peptidase_C65_otubain_sub1 UniProtKB/TrEMBL
  Peptidase_C65_otubain_sub2 UniProtKB/TrEMBL
NCBI Gene OTUB1 ENTREZGENE
PANTHER PTHR12931 UniProtKB/TrEMBL
  PTHR12931:SF19 UniProtKB/TrEMBL
Pfam Peptidase_C65 UniProtKB/TrEMBL
PIRSF Ubiquitin_thioesterase_Otubain UniProtKB/TrEMBL
PROSITE OTU UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A8C0MVM6_CANLF UniProtKB/TrEMBL
  A0A8C0SNI6_CANLF UniProtKB/TrEMBL
  A0A8C0SNM8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SRF7_CANLF UniProtKB/TrEMBL
  A0A8I3Q5J1_CANLF UniProtKB/TrEMBL
  A0A8I3QV57_CANLF UniProtKB/TrEMBL
  A0A8P0NGC3_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:49784 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 OTUB1  OTU deubiquitinase, ubiquitin aldehyde binding 1  OTUB1  OTU deubiquitinase, ubiquitin aldehyde binding 1  Data merged from RGD:12423523 737654 PROVISIONAL
2021-01-12 OTUB1  OTU deubiquitinase, ubiquitin aldehyde binding 1  OTUB1  OTU domain, ubiquitin aldehyde binding 1  Symbol and/or name change 5135510 APPROVED