SIDT1 (SID1 transmembrane family member 1) - Rat Genome Database

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Gene: SIDT1 (SID1 transmembrane family member 1) Canis lupus familiaris
Analyze
Symbol: SIDT1
Name: SID1 transmembrane family member 1
RGD ID: 12201823
Description: ENCODES a protein that exhibits double-stranded RNA binding (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13317,835,266 - 17,930,679 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3317,836,200 - 17,928,793 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3317,937,860 - 18,032,787 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03318,079,968 - 18,174,760 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3318,079,968 - 18,174,717 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13317,884,011 - 17,978,835 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03317,930,954 - 18,025,935 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03318,481,564 - 18,577,030 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SIDT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13317,835,266 - 17,930,679 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3317,836,200 - 17,928,793 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3317,937,860 - 18,032,787 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03318,079,968 - 18,174,760 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3318,079,968 - 18,174,717 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13317,884,011 - 17,978,835 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03317,930,954 - 18,025,935 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03318,481,564 - 18,577,030 (+)NCBIUU_Cfam_GSD_1.0
SIDT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,532,555 - 113,637,111 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3113,532,555 - 113,629,714 (+)EnsemblGRCh38hg38GRCh38
GRCh373113,251,402 - 113,348,422 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363114,733,908 - 114,831,112 (+)NCBINCBI36Build 36hg18NCBI36
Build 343114,734,182 - 114,830,960NCBI
Celera3111,659,802 - 111,756,995 (+)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3110,626,132 - 110,723,353 (+)NCBIHuRef
CHM1_13113,214,655 - 113,311,801 (+)NCBICHM1_1
T2T-CHM13v2.03116,253,714 - 116,358,275 (+)NCBIT2T-CHM13v2.0
Sidt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391644,060,540 - 44,153,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1644,060,543 - 44,153,559 (-)EnsemblGRCm39 Ensembl
GRCm381644,240,177 - 44,333,212 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1644,240,180 - 44,333,196 (-)EnsemblGRCm38mm10GRCm38
MGSCv371644,240,293 - 44,332,951 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361644,159,512 - 44,252,170 (-)NCBIMGSCv36mm8
Celera1644,597,999 - 44,690,348 (-)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1628.57NCBI
Sidt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,867,758 - 69,965,377 (+)NCBIGRCr8
mRatBN7.21156,362,788 - 56,459,939 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,363,512 - 56,459,050 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1165,176,706 - 65,272,625 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01157,838,945 - 57,934,861 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01156,901,296 - 57,020,492 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01161,320,480 - 61,416,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,321,459 - 61,417,842 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01165,428,045 - 65,525,566 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,926,982 - 58,024,032 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1155,921,516 - 56,015,893 (+)NCBICelera
Cytogenetic Map11q21NCBI
Sidt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542713,649,216 - 13,749,328 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542713,649,216 - 13,747,983 (+)NCBIChiLan1.0ChiLan1.0
SIDT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22111,528,038 - 111,624,661 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13111,532,845 - 111,629,438 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03110,674,270 - 110,771,758 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13117,596,224 - 117,692,704 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3117,629,626 - 117,690,849 (+)Ensemblpanpan1.1panPan2
Sidt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602136,365,591 - 136,447,145 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365361,075,251 - 1,156,312 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365361,074,987 - 1,156,318 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIDT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13146,300,175 - 146,396,542 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113146,300,172 - 146,396,552 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213155,885,429 - 155,981,787 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SIDT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12267,232,377 - 67,324,862 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2267,230,564 - 67,324,784 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604199,150,253 - 99,239,596 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sidt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473134,926,269 - 35,050,518 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473134,925,895 - 35,050,577 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SIDT1
1352 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003434094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014110290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038444963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038462444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038519255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038582842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038647255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000016993   ⟹   ENSCAFP00000015721
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3317,852,863 - 17,928,793 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000048513   ⟹   ENSCAFP00000040441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3317,865,026 - 17,928,793 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000066286   ⟹   ENSCAFP00000057260
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3317,836,200 - 17,928,793 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000067669   ⟹   ENSCAFP00000061369
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3317,865,026 - 17,928,793 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053494   ⟹   ENSCAFP00845042029
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3318,079,968 - 18,174,717 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053541   ⟹   ENSCAFP00845042073
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3318,079,968 - 18,174,717 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053609   ⟹   ENSCAFP00845042125
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3318,079,968 - 18,174,717 (+)Ensembl
RefSeq Acc Id: XM_038444961   ⟹   XP_038300889
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03318,079,968 - 18,174,760 (+)NCBI
RefSeq Acc Id: XM_038444962   ⟹   XP_038300890
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03318,079,968 - 18,174,760 (+)NCBI
RefSeq Acc Id: XM_038444963   ⟹   XP_038300891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03318,118,848 - 18,174,760 (+)NCBI
RefSeq Acc Id: XM_038462442   ⟹   XP_038318370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3317,937,860 - 18,032,787 (+)NCBI
RefSeq Acc Id: XM_038462443   ⟹   XP_038318371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3317,937,860 - 18,032,787 (+)NCBI
RefSeq Acc Id: XM_038462444   ⟹   XP_038318372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3317,976,734 - 18,032,787 (+)NCBI
RefSeq Acc Id: XM_038519255   ⟹   XP_038375183
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13317,884,011 - 17,978,835 (+)NCBI
RefSeq Acc Id: XM_038582840   ⟹   XP_038438768
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03318,481,564 - 18,577,030 (+)NCBI
RefSeq Acc Id: XM_038582841   ⟹   XP_038438769
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03318,481,564 - 18,577,030 (+)NCBI
RefSeq Acc Id: XM_038582842   ⟹   XP_038438770
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03318,520,687 - 18,577,030 (+)NCBI
RefSeq Acc Id: XM_038647253   ⟹   XP_038503181
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03317,930,954 - 18,025,935 (+)NCBI
RefSeq Acc Id: XM_038647254   ⟹   XP_038503182
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03317,930,954 - 18,025,935 (+)NCBI
RefSeq Acc Id: XM_038647255   ⟹   XP_038503183
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03317,970,059 - 18,025,935 (+)NCBI
Ensembl Acc Id: ENSCAFP00000061369   ⟸   ENSCAFT00000067669
Ensembl Acc Id: ENSCAFP00000040441   ⟸   ENSCAFT00000048513
Ensembl Acc Id: ENSCAFP00000057260   ⟸   ENSCAFT00000066286
Ensembl Acc Id: ENSCAFP00000015721   ⟸   ENSCAFT00000016993
RefSeq Acc Id: XP_038375183   ⟸   XM_038519255
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038503181   ⟸   XM_038647253
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038503182   ⟸   XM_038647254
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038503183   ⟸   XM_038647255
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038300889   ⟸   XM_038444961
- Peptide Label: isoform X1
- UniProtKB: A0A8I3Q2N6 (UniProtKB/TrEMBL),   A0A8P0T9A0 (UniProtKB/TrEMBL),   A0A8C0RT22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300890   ⟸   XM_038444962
- Peptide Label: isoform X2
- UniProtKB: A0A8I3QCR7 (UniProtKB/TrEMBL),   A0A8P0SFM8 (UniProtKB/TrEMBL),   A0A8C0RT22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300891   ⟸   XM_038444963
- Peptide Label: isoform X3
- UniProtKB: A0A8C0TNW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318370   ⟸   XM_038462442
- Peptide Label: isoform X1
- UniProtKB: A0A8I3Q2N6 (UniProtKB/TrEMBL),   A0A8P0T9A0 (UniProtKB/TrEMBL),   A0A8C0RT22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318371   ⟸   XM_038462443
- Peptide Label: isoform X2
- UniProtKB: A0A8I3QCR7 (UniProtKB/TrEMBL),   A0A8P0SFM8 (UniProtKB/TrEMBL),   A0A8C0RT22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038318372   ⟸   XM_038462444
- Peptide Label: isoform X3
- UniProtKB: A0A8C0TNW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438768   ⟸   XM_038582840
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RT22 (UniProtKB/TrEMBL),   A0A8I3Q2N6 (UniProtKB/TrEMBL),   A0A8P0T9A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438769   ⟸   XM_038582841
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RT22 (UniProtKB/TrEMBL),   A0A8I3QCR7 (UniProtKB/TrEMBL),   A0A8P0SFM8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038438770   ⟸   XM_038582842
- Peptide Label: isoform X3
- UniProtKB: A0A8C0TNW9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845042029   ⟸   ENSCAFT00845053494
Ensembl Acc Id: ENSCAFP00845042125   ⟸   ENSCAFT00845053609
Ensembl Acc Id: ENSCAFP00845042073   ⟸   ENSCAFT00845053541

Promoters
RGD ID:13688802
Promoter ID:EPDNEW_C6869
Type:single initiation site
Name:SIDT1_1
Description:SID1 transmembrane family member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13317,835,386 - 17,835,446EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010667 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030024410 UniProtKB/TrEMBL
  ENSCAFG00040024004 UniProtKB/TrEMBL
  ENSCAFG00845030165 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000016993.6 UniProtKB/TrEMBL
  ENSCAFT00000066286.2 UniProtKB/TrEMBL
  ENSCAFT00000067669.2 UniProtKB/TrEMBL
  ENSCAFT00030045618.1 UniProtKB/TrEMBL
  ENSCAFT00040044728.1 UniProtKB/TrEMBL
  ENSCAFT00845053494 ENTREZGENE
  ENSCAFT00845053494.1 UniProtKB/TrEMBL
  ENSCAFT00845053541 ENTREZGENE
  ENSCAFT00845053541.1 UniProtKB/TrEMBL
  ENSCAFT00845053609.1 UniProtKB/TrEMBL
InterPro SID1_TM_fam UniProtKB/TrEMBL
NCBI Gene SIDT1 ENTREZGENE
PANTHER PTHR12185 UniProtKB/TrEMBL
  SID1 TRANSMEMBRANE FAMILY MEMBER 1 UniProtKB/TrEMBL
Pfam SID-1_RNA_chan UniProtKB/TrEMBL
UniProt A0A8C0RT22 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TNW9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q2N6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q2V3_CANLF UniProtKB/TrEMBL
  A0A8I3QCR7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SFM8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T9A0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TDA6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:46165 ENTREZGENE