ATP6V0D2 (ATPase H+ transporting V0 subunit d2) - Rat Genome Database

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Pathways
Gene: ATP6V0D2 (ATPase H+ transporting V0 subunit d2) Canis lupus familiaris
Analyze
Symbol: ATP6V0D2
Name: ATPase H+ transporting V0 subunit d2
RGD ID: 12196859
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN proton transmembrane transport (inferred); ASSOCIATED WITH cervical cancer (ortholog); ovarian cyst (ortholog); ovarian serous cystadenocarcinoma (ortholog); FOUND IN early endosome (ortholog); endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit d 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12932,336,304 - 32,378,818 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2932,336,467 - 32,378,527 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2932,557,003 - 32,599,242 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02932,491,620 - 32,533,856 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2932,491,605 - 32,533,570 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12932,535,987 - 32,578,019 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02932,560,242 - 32,602,461 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02932,980,580 - 33,022,805 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V0D2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12932,336,304 - 32,378,818 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2932,336,467 - 32,378,527 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2932,557,003 - 32,599,242 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02932,491,620 - 32,533,856 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2932,491,605 - 32,533,570 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12932,535,987 - 32,578,019 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02932,560,242 - 32,602,461 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02932,980,580 - 33,022,805 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
ATP6V0D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38886,098,910 - 86,154,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl885,987,323 - 86,154,228 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh37887,111,139 - 87,166,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36887,180,255 - 87,235,570 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34887,180,254 - 87,235,570NCBI
Celera883,305,507 - 83,360,717 (+)NCBICelera
Cytogenetic Map8q21.3NCBI
HuRef882,320,757 - 82,376,003 (+)NCBIHuRef
CHM1_1887,152,442 - 87,207,669 (+)NCBICHM1_1
T2T-CHM13v2.0887,216,307 - 87,271,615 (+)NCBIT2T-CHM13v2.0
Atp6v0d2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39419,876,838 - 19,922,566 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl419,876,838 - 19,922,614 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38419,876,838 - 19,922,566 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl419,876,841 - 19,922,605 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37419,803,985 - 19,849,713 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36419,803,988 - 19,849,713 (-)NCBIMGSCv36mm8
Celera419,634,311 - 19,678,717 (-)NCBICelera
Cytogenetic Map4A3NCBI
cM Map47.67NCBI
Atp6v0d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8538,133,151 - 38,182,245 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl538,133,158 - 38,182,245 (-)EnsemblGRCr8
mRatBN7.2533,336,257 - 33,385,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl533,336,264 - 33,385,354 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx535,456,598 - 35,505,752 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0537,048,803 - 37,097,953 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0536,988,308 - 37,037,462 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd538,228,963 - 38,278,115 (-)NCBI
Lyon_Normotensive539,632,101 - 39,681,245 (-)NCBI
Lyon_Hypertensive539,058,416 - 39,107,548 (-)NCBI
F344_StmMcwi532,902,457 - 32,958,854 (-)NCBI
Rnor_6.0533,843,591 - 33,892,446 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl533,843,519 - 33,892,462 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0538,499,081 - 38,547,691 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4534,476,045 - 34,524,995 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera532,423,635 - 32,472,662 (-)NCBICelera
RGSC_v3.1534,476,226 - 34,525,174 (-)NCBI
Cytogenetic Map5q13NCBI
Atp6v0d2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,778,462 - 3,836,672 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554173,778,587 - 3,832,973 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27103,507,650 - 103,563,060 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1879,045,991 - 79,101,384 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0882,800,353 - 82,855,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1884,771,532 - 84,826,406 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl884,771,427 - 84,826,406 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
Atp6v0d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1747,056,822 - 47,102,718 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440530346,973,049 - 47,018,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936544774,125 - 819,244 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936544774,154 - 819,189 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0D2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl450,694,189 - 50,749,378 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1450,694,188 - 50,749,373 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2455,660,240 - 55,715,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1889,917,435 - 89,973,686 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366603959,615,834 - 59,691,705 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1881,280,642 - 81,336,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl881,280,888 - 81,337,106 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Atp6v0d2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247445,618,144 - 5,663,794 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247445,617,711 - 5,664,006 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl2128,889,261 - 28,936,096 (+)Ensembl
Atp6v0d2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11123,830,126 - 123,877,025 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in ATP6V0D2
691 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000013922   ⟹   ENSCAFP00000012882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2932,336,467 - 32,378,527 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845030982   ⟹   ENSCAFP00845024276
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2932,491,605 - 32,533,570 (+)Ensembl
RefSeq Acc Id: XM_038441527   ⟹   XP_038297455
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02932,491,620 - 32,533,856 (+)NCBI
RefSeq Acc Id: XM_038516095   ⟹   XP_038372023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12932,535,987 - 32,578,019 (+)NCBI
RefSeq Acc Id: XM_038579666   ⟹   XP_038435594
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02932,980,580 - 33,022,805 (+)NCBI
RefSeq Acc Id: XM_038643907   ⟹   XP_038499835
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02932,560,242 - 32,602,461 (+)NCBI
RefSeq Acc Id: XM_535118   ⟹   XP_535118
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12932,336,304 - 32,378,818 (+)NCBI
Dog10K_Boxer_Tasha2932,557,003 - 32,599,242 (+)NCBI
Sequence:
RefSeq Acc Id: XP_535118   ⟸   XM_535118
- UniProtKB: A0A8C0L3A6 (UniProtKB/TrEMBL),   A0A8I3NSM9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000012882   ⟸   ENSCAFT00000013922
RefSeq Acc Id: XP_038372023   ⟸   XM_038516095
RefSeq Acc Id: XP_038499835   ⟸   XM_038643907
RefSeq Acc Id: XP_038297455   ⟸   XM_038441527
- UniProtKB: A0A8C0L3A6 (UniProtKB/TrEMBL),   A0A8I3NSM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038435594   ⟸   XM_038579666
- UniProtKB: A0A8C0L3A6 (UniProtKB/TrEMBL),   A0A8I3NSM9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845024276   ⟸   ENSCAFT00845030982


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008749 Ensembl
  ENSCAFG00845017487 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845030982 ENTREZGENE
  ENSCAFT00845030982.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.132.50 UniProtKB/TrEMBL
  1.20.1690.10 UniProtKB/TrEMBL
InterPro ATPase_su_c/d_sf UniProtKB/TrEMBL
  ATPase_V0-cplx_csu/dsu UniProtKB/TrEMBL
  ATPase_V0-cplx_dsu UniProtKB/TrEMBL
  V-type_ATPase_su_c/d_dom_3 UniProtKB/TrEMBL
  V-type_ATPase_suC/d UniProtKB/TrEMBL
KEGG Report cfa:477929 UniProtKB/TrEMBL
NCBI Gene ATP6V0D2 ENTREZGENE
PANTHER PTHR11028 UniProtKB/TrEMBL
Pfam vATP-synt_AC39 UniProtKB/TrEMBL
PIRSF V-ATP_synth_D UniProtKB/TrEMBL
Superfamily-SCOP SSF103486 UniProtKB/TrEMBL
UniProt A0A8C0L3A6 ENTREZGENE
  A0A8I3NSM9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38274 ENTREZGENE