ATP6V0D2 (ATPase H+ transporting V0 subunit d2) - Rat Genome Database

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Gene: ATP6V0D2 (ATPase H+ transporting V0 subunit d2) Sus scrofa
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Symbol: ATP6V0D2
Name: ATPase H+ transporting V0 subunit d2
RGD ID: 13917448
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN proton transmembrane transport (inferred); vacuolar acidification (inferred); vacuolar transport (inferred); ASSOCIATED WITH genetic disease (ortholog); ovarian cyst (ortholog); Stomach Neoplasms (ortholog); FOUND IN endosome (ortholog); INTERACTS WITH ethanol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit d 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl450,694,189 - 50,749,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1450,694,188 - 50,749,373 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2455,660,240 - 55,715,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ethanol  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V0D2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl450,694,189 - 50,749,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1450,694,188 - 50,749,373 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2455,660,240 - 55,715,444 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38886,098,910 - 86,154,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl885,987,323 - 86,154,225 (+)EnsemblGRCh38hg38GRCh38
GRCh37887,111,139 - 87,166,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36887,180,255 - 87,235,570 (+)NCBINCBI36Build 36hg18NCBI36
Build 34887,180,254 - 87,235,570NCBI
Celera883,305,507 - 83,360,717 (+)NCBICelera
Cytogenetic Map8q21.3NCBI
HuRef882,320,757 - 82,376,003 (+)NCBIHuRef
CHM1_1887,152,442 - 87,207,669 (+)NCBICHM1_1
T2T-CHM13v2.0887,216,307 - 87,271,615 (+)NCBIT2T-CHM13v2.0
Atp6v0d2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39419,876,838 - 19,922,566 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl419,876,841 - 19,922,605 (-)EnsemblGRCm39 Ensembl
GRCm38419,876,838 - 19,922,566 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl419,876,841 - 19,922,605 (-)EnsemblGRCm38mm10GRCm38
MGSCv37419,803,985 - 19,849,713 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36419,803,988 - 19,849,713 (-)NCBIMGSCv36mm8
Celera419,634,311 - 19,678,717 (-)NCBICelera
Cytogenetic Map4A3NCBI
cM Map47.67NCBI
Atp6v0d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8538,133,151 - 38,182,245 (-)NCBIGRCr8
mRatBN7.2533,336,257 - 33,385,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl533,336,264 - 33,385,354 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx535,456,598 - 35,505,752 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0537,048,803 - 37,097,953 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0536,988,308 - 37,037,462 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0533,843,591 - 33,892,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl533,843,519 - 33,892,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0538,499,081 - 38,547,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4534,476,045 - 34,524,995 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1534,476,226 - 34,525,174 (-)NCBI
Celera532,423,635 - 32,472,662 (-)NCBICelera
Cytogenetic Map5q13NCBI
Atp6v0d2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,778,462 - 3,836,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,778,587 - 3,832,973 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27103,507,650 - 103,563,060 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1879,045,991 - 79,101,384 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0882,800,353 - 82,855,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1884,771,532 - 84,826,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl884,771,427 - 84,826,406 (+)Ensemblpanpan1.1panPan2
ATP6V0D2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12932,336,304 - 32,378,818 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2932,336,467 - 32,378,527 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,557,003 - 32,599,242 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02932,491,620 - 32,533,856 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2932,491,605 - 32,533,570 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12932,535,987 - 32,578,019 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02932,560,242 - 32,602,461 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02932,980,580 - 33,022,805 (+)NCBIUU_Cfam_GSD_1.0
Atp6v0d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530346,973,049 - 47,018,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936544774,125 - 819,244 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936544774,154 - 819,189 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1881,280,642 - 81,336,945 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl881,280,888 - 81,337,106 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603959,615,834 - 59,691,705 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0d2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247445,617,711 - 5,664,006 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247445,618,144 - 5,663,794 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP6V0D2
1312 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system hemolymphoid system nervous system renal system reproductive system
High
Medium 2
Low 1 1 1
Below cutoff 1 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000006731   ⟹   ENSSSCP00000006548
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl450,694,189 - 50,749,378 (-)Ensembl
RefSeq Acc Id: XM_003125581   ⟹   XP_003125629
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1450,694,188 - 50,749,373 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003125629   ⟸   XM_003125581
- UniProtKB: F1RXD2 (UniProtKB/TrEMBL),   A0A4X1UE85 (UniProtKB/TrEMBL),   A0A8D0LSI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000006548   ⟸   ENSSSCT00000006731


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006138 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032590 UniProtKB/TrEMBL
  ENSSSCG00015028702 UniProtKB/TrEMBL
  ENSSSCG00025056981 UniProtKB/TrEMBL
  ENSSSCG00030038470 UniProtKB/TrEMBL
  ENSSSCG00035068876 UniProtKB/TrEMBL
  ENSSSCG00045000790 UniProtKB/TrEMBL
  ENSSSCG00050011331 UniProtKB/TrEMBL
  ENSSSCG00055003293 UniProtKB/TrEMBL
  ENSSSCG00060010671 UniProtKB/TrEMBL
  ENSSSCG00065027693 UniProtKB/TrEMBL
  ENSSSCG00070016268 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006731 ENTREZGENE
  ENSSSCT00000006731.2 UniProtKB/TrEMBL
  ENSSSCT00005052036.1 UniProtKB/TrEMBL
  ENSSSCT00015038019.1 UniProtKB/TrEMBL
  ENSSSCT00025077941.1 UniProtKB/TrEMBL
  ENSSSCT00030053532.1 UniProtKB/TrEMBL
  ENSSSCT00035092994.1 UniProtKB/TrEMBL
  ENSSSCT00045001145.1 UniProtKB/TrEMBL
  ENSSSCT00050015243.1 UniProtKB/TrEMBL
  ENSSSCT00055006431.1 UniProtKB/TrEMBL
  ENSSSCT00060013858.1 UniProtKB/TrEMBL
  ENSSSCT00065037302.1 UniProtKB/TrEMBL
  ENSSSCT00070031981.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.132.50 UniProtKB/TrEMBL
  1.20.1690.10 UniProtKB/TrEMBL
InterPro ATPase_su_C-like UniProtKB/TrEMBL
  ATPase_V0-cplx_csu/dsu UniProtKB/TrEMBL
  ATPase_V0-cplx_dsu UniProtKB/TrEMBL
  V-type_ATPase_su_c/d_dom_3 UniProtKB/TrEMBL
  V-type_ATPase_suC UniProtKB/TrEMBL
KEGG Report ssc:100521494 UniProtKB/TrEMBL
NCBI Gene ATP6V0D2 ENTREZGENE
PANTHER PTHR11028 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT D 2 UniProtKB/TrEMBL
Pfam vATP-synt_AC39 UniProtKB/TrEMBL
PIRSF V-ATP_synth_D UniProtKB/TrEMBL
Superfamily-SCOP SSF103486 UniProtKB/TrEMBL
UniProt A0A4X1UE85 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LSI1 ENTREZGENE, UniProtKB/TrEMBL
  F1RXD2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85668 ENTREZGENE