LOC100685713 (SURP and G-patch domain-containing protein 2-like) - Rat Genome Database

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Gene: LOC100685713 (SURP and G-patch domain-containing protein 2-like) Canis lupus familiaris
Analyze
Symbol: LOC100685713
Name: SURP and G-patch domain-containing protein 2-like
RGD ID: 12145093
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN mRNA processing (inferred); RNA processing (inferred); RNA splicing (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SURP and G-patch domain-containing protein 2 pseudogene
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13223,933,491 - 23,936,941 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3218,087,003 - 18,090,434 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03224,152,244 - 24,155,676 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13224,133,209 - 24,136,704 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03223,911,704 - 23,915,217 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03215,946,952 - 15,950,426 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function
RNA binding  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100685713
58 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038444250   ⟹   XP_038300178
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03224,152,244 - 24,155,676 (+)NCBI
RefSeq Acc Id: XM_038462043   ⟹   XP_038317971
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3218,087,003 - 18,090,434 (-)NCBI
RefSeq Acc Id: XM_038518647   ⟹   XP_038374575
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13224,133,209 - 24,136,704 (+)NCBI
RefSeq Acc Id: XM_038582021   ⟹   XP_038437949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03215,946,952 - 15,950,426 (-)NCBI
RefSeq Acc Id: XM_038646590   ⟹   XP_038502518
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03223,911,704 - 23,915,217 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038300178 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317971 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374575 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502518 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00030022786.1
RefSeq Acc Id: XP_038374575   ⟸   XM_038518647
RefSeq Acc Id: XP_038502518   ⟸   XM_038646590
RefSeq Acc Id: XP_038300178   ⟸   XM_038444250
- UniProtKB: A0A8C0NDA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317971   ⟸   XM_038462043
- UniProtKB: A0A8C0NDA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437949   ⟸   XM_038582021
- UniProtKB: A0A8C0NDA3 (UniProtKB/TrEMBL)
Protein Domains
G-patch   SURP motif


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00030014024 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030026093.1 UniProtKB/TrEMBL
Gene3D-CATH Surp module UniProtKB/TrEMBL
InterPro G_patch_dom UniProtKB/TrEMBL
  SUGP1/2 UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
  SWAP/Surp_sf UniProtKB/TrEMBL
NCBI Gene LOC100685713 ENTREZGENE
PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 UniProtKB/TrEMBL
  SURP AND G-PATCH DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
PROSITE G_PATCH UniProtKB/TrEMBL
  SURP UniProtKB/TrEMBL
SMART G_patch UniProtKB/TrEMBL
  SWAP UniProtKB/TrEMBL
Superfamily-SCOP Surp module (SWAP domain) UniProtKB/TrEMBL
UniProt A0A8C0NDA3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC100685713  SURP and G-patch domain-containing protein 2-like  LOC100685713  SURP and G-patch domain-containing protein 2 pseudogene  Symbol and/or name change 5135510 APPROVED