LOC100685713 (SURP and G-patch domain-containing protein 2-like) - Rat Genome Database

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Gene: LOC100685713 (SURP and G-patch domain-containing protein 2-like) Canis lupus familiaris
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Symbol: LOC100685713
Name: SURP and G-patch domain-containing protein 2-like
RGD ID: 12145093
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN mRNA processing (inferred); RNA processing (inferred); RNA splicing (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SURP and G-patch domain-containing protein 2 pseudogene
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13223,933,491 - 23,936,941 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3218,087,003 - 18,090,434 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03224,152,244 - 24,155,676 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13224,133,209 - 24,136,704 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03223,911,704 - 23,915,217 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03215,946,952 - 15,950,426 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC100685713DogmRNA processing involved_inIEAUniProtKB-KW:KW-0507150520179 UniProtGO_REF:0000043
LOC100685713DogRNA processing involved_inIEAInterPro:IPR000061 and InterPro:IPR035967150520179 InterProGO_REF:0000002
LOC100685713DogRNA splicing involved_inIEAUniProtKB-KW:KW-0508150520179 UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC100685713Dognucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC100685713Dognucleic acid binding enablesIEAInterPro:IPR000467150520179 InterProGO_REF:0000002
LOC100685713DogRNA binding enablesIEAInterPro:IPR000061 and InterPro:IPR035967150520179 InterProGO_REF:0000002

PMID:22301074   PMID:30032202  



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Variants in LOC100685713
58 total Variants






RefSeq Acc Id: XM_038444250   ⟹   XP_038300178
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03224,152,244 - 24,155,676 (+)NCBI
RefSeq Acc Id: XM_038462043   ⟹   XP_038317971
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3218,087,003 - 18,090,434 (-)NCBI
RefSeq Acc Id: XM_038518647   ⟹   XP_038374575
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13224,133,209 - 24,136,704 (+)NCBI
RefSeq Acc Id: XM_038582021   ⟹   XP_038437949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03215,946,952 - 15,950,426 (-)NCBI
RefSeq Acc Id: XM_038646590   ⟹   XP_038502518
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03223,911,704 - 23,915,217 (+)NCBI
Protein RefSeqs XP_038300178 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317971 (Get FASTA)   NCBI Sequence Viewer  
  XP_038374575 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038502518 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00030022786.1
RefSeq Acc Id: XP_038374575   ⟸   XM_038518647
RefSeq Acc Id: XP_038502518   ⟸   XM_038646590
RefSeq Acc Id: XP_038300178   ⟸   XM_038444250
- UniProtKB: A0A8C0NDA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038317971   ⟸   XM_038462043
- UniProtKB: A0A8C0NDA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437949   ⟸   XM_038582021
- UniProtKB: A0A8C0NDA3 (UniProtKB/TrEMBL)
G-patch   SURP motif



1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00030014024 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030026093.1 UniProtKB/TrEMBL
Gene3D-CATH Surp module UniProtKB/TrEMBL
InterPro G_patch_dom UniProtKB/TrEMBL
  SUGP1/2 UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
  SWAP/Surp_sf UniProtKB/TrEMBL
NCBI Gene LOC100685713 ENTREZGENE
PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 UniProtKB/TrEMBL
  SURP AND G-PATCH DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
  Surp UniProtKB/TrEMBL
PROSITE G_PATCH UniProtKB/TrEMBL
  SURP UniProtKB/TrEMBL
SMART G_patch UniProtKB/TrEMBL
  SWAP UniProtKB/TrEMBL
Superfamily-SCOP Surp module (SWAP domain) UniProtKB/TrEMBL
UniProt A0A8C0NDA3 ENTREZGENE, UniProtKB/TrEMBL
1 to 18 of 18 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC100685713  SURP and G-patch domain-containing protein 2-like  LOC100685713  SURP and G-patch domain-containing protein 2 pseudogene  Symbol and/or name change 5135510 APPROVED