LOC100684998 (AP-4 complex subunit sigma-1-like) - Rat Genome Database

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Gene: LOC100684998 (AP-4 complex subunit sigma-1-like) Canis lupus familiaris
Analyze
Symbol: LOC100684998
Name: AP-4 complex subunit sigma-1-like
RGD ID: 12134139
Description: INVOLVED IN intracellular protein transport (inferred); protein transport (inferred); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AP-4 complex subunit sigma-1 pseudogene
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13817,617,408 - 17,618,075 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3817,673,971 - 17,674,460 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03817,673,025 - 17,673,514 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13817,670,999 - 17,671,488 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03818,021,868 - 18,022,357 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03818,316,056 - 18,316,545 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100684998
5 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038448534   ⟹   XP_038304462
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03817,673,025 - 17,673,514 (-)NCBI
RefSeq Acc Id: XM_038464095   ⟹   XP_038320023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3817,673,971 - 17,674,460 (-)NCBI
RefSeq Acc Id: XM_038522424   ⟹   XP_038378352
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13817,670,999 - 17,671,488 (-)NCBI
RefSeq Acc Id: XM_038586216   ⟹   XP_038442144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03818,316,056 - 18,316,545 (-)NCBI
RefSeq Acc Id: XM_038650629   ⟹   XP_038506557
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03818,021,868 - 18,022,357 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038304462 (Get FASTA)   NCBI Sequence Viewer  
  XP_038320023 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378352 (Get FASTA)   NCBI Sequence Viewer  
  XP_038442144 (Get FASTA)   NCBI Sequence Viewer  
  XP_038506557 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000071857.1
Reference Protein Sequences
RefSeq Acc Id: XP_038378352   ⟸   XM_038522424
RefSeq Acc Id: XP_038506557   ⟸   XM_038650629
RefSeq Acc Id: XP_038304462   ⟸   XM_038448534
- UniProtKB: A0A8C0LHF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038320023   ⟸   XM_038464095
- UniProtKB: A0A8C0LHF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038442144   ⟸   XM_038586216
- UniProtKB: A0A8C0LHF4 (UniProtKB/TrEMBL)
Protein Domains
AP complex mu/sigma subunit


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000051139 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000108169.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.60 UniProtKB/TrEMBL
InterPro AP_complex_ssu UniProtKB/TrEMBL
  AP_mu_sigma_su UniProtKB/TrEMBL
  Longin-like_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC100684998 ENTREZGENE
PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY UniProtKB/TrEMBL
  AP-4 COMPLEX SUBUNIT SIGMA-1 UniProtKB/TrEMBL
Pfam Clat_adaptor_s UniProtKB/TrEMBL
PIRSF AP_complex_sigma UniProtKB/TrEMBL
Superfamily-SCOP SNARE-like UniProtKB/TrEMBL
UniProt A0A8C0LHF4 ENTREZGENE
  A0A8P0TRF7_CANLF UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC100684998  AP-4 complex subunit sigma-1-like  LOC100684998  AP-4 complex subunit sigma-1 pseudogene  Symbol and/or name change 5135510 APPROVED