MUC19 (mucin 19, oligomeric) - Rat Genome Database

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Gene: MUC19 (mucin 19, oligomeric) Canis lupus familiaris
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Symbol: MUC19
Name: mucin 19, oligomeric
RGD ID: 12128914
Description: ENCODES a protein that exhibits hydroxyapatite binding (ortholog); INVOLVED IN antibacterial innate immune response (ortholog); B cell differentiation (ortholog); B cell proliferation (ortholog); ASSOCIATED WITH inflammatory bowel disease (ortholog); Sjogren's syndrome (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: collagen alpha-2(I) chain-like; LOC102152235; LOC102152282; LOC102156279; LOC102156355; LOC102156424; LOC106557892; mucin-19; submaxillary mucin-like protein; uncharacterized LOC102152235; uncharacterized LOC102152282; uncharacterized LOC106557892
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12713,109,208 - 13,253,506 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2733,200,314 - 33,269,665 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02713,345,553 - 13,425,631 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12713,157,824 - 13,212,150 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02713,158,057 - 13,273,101 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02733,326,451 - 33,375,462 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MUC19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12713,109,208 - 13,253,506 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2733,200,314 - 33,269,665 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02713,345,553 - 13,425,631 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12713,157,824 - 13,212,150 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02713,158,057 - 13,273,101 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02733,326,451 - 33,375,462 (+)NCBIUU_Cfam_GSD_1.0
MUC19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381240,393,394 - 40,570,757 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1240,393,395 - 40,570,832 (+)EnsemblGRCh38hg38GRCh38
GRCh371240,787,196 - 40,964,559 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361239,099,241 - 39,159,173 (+)NCBINCBI36Build 36hg18NCBI36
Celera1239,730,155 - 39,736,719 (+)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1237,819,296 - 37,991,533 (+)NCBIHuRef
CHM1_11240,756,791 - 40,928,894 (+)NCBICHM1_1
T2T-CHM13v2.01240,345,593 - 40,530,490 (+)NCBIT2T-CHM13v2.0
Muc19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391591,722,531 - 91,832,440 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1591,722,531 - 91,832,447 (+)EnsemblGRCm39 Ensembl
GRCm381591,838,326 - 91,934,555 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1591,838,326 - 91,934,555 (+)EnsemblGRCm38mm10GRCm38
MGSCv371591,668,757 - 91,764,986 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361591,668,757 - 91,764,986 (+)NCBIMGSCv36mm8
Celera1593,953,946 - 94,069,110 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1546.14NCBI
Muc19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87124,897,424 - 125,018,582 (+)NCBIGRCr8
mRatBN7.27123,017,896 - 123,139,053 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7123,017,896 - 123,139,053 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7124,796,332 - 124,919,313 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07127,022,195 - 127,145,177 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07126,950,304 - 127,075,782 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07133,048,727 - 133,166,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07132,769,775 - 132,845,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47130,338,439 - 130,417,203 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7119,454,490 - 119,555,901 (+)NCBICelera
Cytogenetic Map7q35NCBI
Muc19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955505729 - 64,653 (-)NCBIChiLan1.0ChiLan1.0
MUC19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21053,578,444 - 53,771,545 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11253,575,206 - 53,768,305 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01248,135,613 - 48,319,443 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11248,998,606 - 49,181,747 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC101958024
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494573,584,893 - 73,723,415 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936607418,290 - 443,988 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MUC19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1571,964,131 - 72,069,073 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2574,792,758 - 74,839,816 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MUC19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11136,679,954 - 36,829,714 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037209,936,670 - 210,115,404 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in MUC19
1753 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022411498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005413624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_038438508   ⟹   XP_038294436
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02713,345,553 - 13,425,628 (-)NCBI
RefSeq Acc Id: XM_038438509   ⟹   XP_038294437
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02713,345,553 - 13,425,628 (-)NCBI
RefSeq Acc Id: XM_038438510   ⟹   XP_038294438
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02713,345,553 - 13,425,628 (-)NCBI
RefSeq Acc Id: XM_038438511   ⟹   XP_038294439
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02713,345,553 - 13,425,628 (-)NCBI
RefSeq Acc Id: XM_038438512   ⟹   XP_038294440
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02713,345,553 - 13,425,631 (-)NCBI
RefSeq Acc Id: XM_038438513   ⟹   XP_038294441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02713,345,553 - 13,425,626 (-)NCBI
RefSeq Acc Id: XM_038438514   ⟹   XP_038294442
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02713,345,553 - 13,425,626 (-)NCBI
RefSeq Acc Id: XM_038459541   ⟹   XP_038315469
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2733,200,314 - 33,269,665 (+)NCBI
RefSeq Acc Id: XM_038513190   ⟹   XP_038369118
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12713,157,824 - 13,212,150 (-)NCBI
RefSeq Acc Id: XM_038513191   ⟹   XP_038369119
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12713,157,824 - 13,212,150 (-)NCBI
RefSeq Acc Id: XM_038513192   ⟹   XP_038369120
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12713,157,824 - 13,212,150 (-)NCBI
RefSeq Acc Id: XM_038513193   ⟹   XP_038369121
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12713,157,824 - 13,212,150 (-)NCBI
RefSeq Acc Id: XM_038513194   ⟹   XP_038369122
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12713,157,824 - 13,212,150 (-)NCBI
RefSeq Acc Id: XM_038577308   ⟹   XP_038433236
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02733,326,451 - 33,375,462 (+)NCBI
RefSeq Acc Id: XM_038577309   ⟹   XP_038433237
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02733,326,451 - 33,375,462 (+)NCBI
RefSeq Acc Id: XM_038577310   ⟹   XP_038433238
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02733,326,451 - 33,375,462 (+)NCBI
RefSeq Acc Id: XM_038577311   ⟹   XP_038433239
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02733,326,451 - 33,375,462 (+)NCBI
RefSeq Acc Id: XM_038640970   ⟹   XP_038496898
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02713,158,057 - 13,273,101 (-)NCBI
RefSeq Acc Id: XM_038640971   ⟹   XP_038496899
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02713,158,057 - 13,273,101 (-)NCBI
RefSeq Acc Id: XM_038640972   ⟹   XP_038496900
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02713,158,057 - 13,273,101 (-)NCBI
RefSeq Acc Id: XM_038640973   ⟹   XP_038496901
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02713,158,057 - 13,273,101 (-)NCBI
RefSeq Acc Id: XM_038640974   ⟹   XP_038496902
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02713,158,057 - 13,273,101 (-)NCBI
RefSeq Acc Id: XM_038640975   ⟹   XP_038496903
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02713,158,057 - 13,273,101 (-)NCBI
RefSeq Acc Id: XM_038640976   ⟹   XP_038496904
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02713,158,057 - 13,273,100 (-)NCBI
RefSeq Acc Id: XM_038640977   ⟹   XP_038496905
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02713,158,057 - 13,273,100 (-)NCBI
RefSeq Acc Id: XR_005413624
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02713,184,532 - 13,273,100 (-)NCBI
RefSeq Acc Id: XP_038369122   ⟸   XM_038513194
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038369121   ⟸   XM_038513193
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038369119   ⟸   XM_038513191
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038369120   ⟸   XM_038513192
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038369118   ⟸   XM_038513190
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038496899   ⟸   XM_038640971
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038496901   ⟸   XM_038640973
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038496900   ⟸   XM_038640972
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038496903   ⟸   XM_038640975
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038496902   ⟸   XM_038640974
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038496898   ⟸   XM_038640970
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038496905   ⟸   XM_038640977
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038496904   ⟸   XM_038640976
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038294440   ⟸   XM_038438512
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038294437   ⟸   XM_038438509
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038294439   ⟸   XM_038438511
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038294438   ⟸   XM_038438510
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038294436   ⟸   XM_038438508
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038294442   ⟸   XM_038438514
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038294441   ⟸   XM_038438513
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038315469   ⟸   XM_038459541
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038433236   ⟸   XM_038577308
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038433237   ⟸   XM_038577309
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038433238   ⟸   XM_038577310
- Peptide Label: isoform X23
- UniProtKB: A0A8C0TM63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038433239   ⟸   XM_038577311
- Peptide Label: isoform X24
- UniProtKB: A0A8C0TM63 (UniProtKB/TrEMBL)
Protein Domains
VWFD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00040023192 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00040043104.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro Ser_inhib-like_sf UniProtKB/TrEMBL
  TIL_dom UniProtKB/TrEMBL
  VWF/SSPO/ZAN-like_Cys-rich_dom UniProtKB/TrEMBL
  VWF_type-D UniProtKB/TrEMBL
NCBI Gene LOC102156424 ENTREZGENE
PANTHER MUCIN-19 UniProtKB/TrEMBL
  MUCIN-19 UniProtKB/TrEMBL
Pfam PF08742 UniProtKB/TrEMBL
  TIL UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
PROSITE VWFD UniProtKB/TrEMBL
SMART SM00832 UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
Superfamily-SCOP Serine protease inhibitors UniProtKB/TrEMBL
UniProt A0A8C0TM63 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-21 MUC19  mucin 19, oligomeric  LOC102156355  collagen alpha-2(I) chain-like  Data merged from RGD:12133017 737654 PROVISIONAL
2017-11-21 MUC19  mucin 19, oligomeric  LOC102152235  uncharacterized LOC102152235  Data merged from RGD:12328634 737654 PROVISIONAL
2017-11-21 MUC19  mucin 19, oligomeric  LOC106557892  uncharacterized LOC106557892  Data merged from RGD:12207690 737654 PROVISIONAL
2017-11-21 MUC19  mucin 19, oligomeric  LOC102156279  submaxillary mucin-like protein  Data merged from RGD:12403462 737654 PROVISIONAL
2017-11-21 MUC19  mucin 19, oligomeric  LOC102152282  uncharacterized LOC102152282  Data merged from RGD:12094232 737654 PROVISIONAL
2017-09-12 MUC19  mucin 19, oligomeric  LOC102156424  mucin-19  Symbol and/or name change 5135510 APPROVED