UBQLNL (ubiquilin like) - Rat Genome Database

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Gene: UBQLNL (ubiquilin like) Canis lupus familiaris
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Symbol: UBQLNL
Name: ubiquilin like
RGD ID: 12128631
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquilin-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,434,847 - 28,437,178 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2128,435,132 - 28,437,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2128,213,850 - 28,216,179 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02129,257,541 - 29,259,870 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12128,573,490 - 28,575,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02128,777,733 - 28,780,062 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02128,913,814 - 28,916,143 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
UBQLNL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,434,847 - 28,437,178 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2128,435,132 - 28,437,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2128,213,850 - 28,216,179 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02129,257,541 - 29,259,870 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12128,573,490 - 28,575,819 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02128,777,733 - 28,780,062 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02128,913,814 - 28,916,143 (+)NCBIUU_Cfam_GSD_1.0
UBQLNL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,514,393 - 5,516,699 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,514,393 - 5,518,431 (-)EnsemblGRCh38hg38GRCh38
GRCh37115,535,623 - 5,537,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,492,199 - 5,494,532 (-)NCBINCBI36Build 36hg18NCBI36
Celera115,654,203 - 5,656,536 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef115,193,428 - 5,195,762 (-)NCBIHuRef
CHM1_1115,534,603 - 5,536,936 (-)NCBICHM1_1
T2T-CHM13v2.0115,573,735 - 5,576,041 (-)NCBIT2T-CHM13v2.0
Ubqlnl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397103,797,466 - 103,799,763 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7103,797,466 - 103,799,763 (-)EnsemblGRCm39 Ensembl
GRCm387104,148,259 - 104,150,556 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7104,148,259 - 104,150,556 (-)EnsemblGRCm38mm10GRCm38
MGSCv377111,296,773 - 111,299,070 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367104,022,080 - 104,024,367 (-)NCBIMGSCv36mm8
Celera7104,529,424 - 104,531,721 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map754.85NCBI
Ubqlnl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,027,056 - 168,029,305 (-)NCBIGRCr8
mRatBN7.21158,615,177 - 158,617,426 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1158,615,056 - 158,617,512 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1166,609,032 - 166,611,281 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01173,789,058 - 173,791,307 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01166,675,339 - 166,677,588 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01169,342,005 - 169,344,254 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1169,341,995 - 169,344,306 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,489,304 - 175,491,553 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41161,984,944 - 161,987,193 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11162,078,827 - 162,081,077 (-)NCBI
Celera1156,613,201 - 156,615,450 (-)NCBICelera
Cytogenetic Map1q32NCBI
Ubqlnl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541421,420,864 - 21,422,698 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541421,420,663 - 21,422,968 (-)NCBIChiLan1.0ChiLan1.0
UBQLNL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v297,963,494 - 7,964,921 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1117,921,196 - 7,922,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0115,659,443 - 5,662,642 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1115,342,032 - 5,343,533 (-)NCBIpanpan1.1PanPan1.1panPan2
Ubqlnl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494757,580,601 - 57,582,908 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937097119,321 - 121,135 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937097119,321 - 121,135 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBQLNL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl94,282,623 - 4,284,908 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.194,282,587 - 4,284,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.294,894,899 - 4,897,158 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBQLNL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,198,001 - 61,201,489 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604364,780,153 - 64,784,058 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in UBQLNL
23 total Variants

Expression

RNA-SEQ Expression

adipose tissue
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 1 4 3 4 2 2 2 2 8 6 1 8 2

Sequence


Ensembl Acc Id: ENSCAFT00000045670   ⟹   ENSCAFP00000040806
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2128,435,132 - 28,437,178 (+)Ensembl
RefSeq Acc Id: XM_003433024   ⟹   XP_003433072
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12128,434,847 - 28,437,178 (+)NCBI
Dog10K_Boxer_Tasha2128,213,850 - 28,216,179 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038429589   ⟹   XP_038285517
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02129,257,541 - 29,259,870 (+)NCBI
RefSeq Acc Id: XM_038505658   ⟹   XP_038361586
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12128,573,490 - 28,575,819 (+)NCBI
RefSeq Acc Id: XM_038568852   ⟹   XP_038424780
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02128,913,814 - 28,916,143 (+)NCBI
RefSeq Acc Id: XM_038632270   ⟹   XP_038488198
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02128,777,733 - 28,780,062 (+)NCBI
RefSeq Acc Id: XP_003433072   ⟸   XM_003433024
- UniProtKB: A0A8C0N3W0 (UniProtKB/TrEMBL),   A0A8C0K7S0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000040806   ⟸   ENSCAFT00000045670
RefSeq Acc Id: XP_038361586   ⟸   XM_038505658
RefSeq Acc Id: XP_038488198   ⟸   XM_038632270
RefSeq Acc Id: XP_038285517   ⟸   XM_038429589
- UniProtKB: A0A8C0K7S0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038424780   ⟸   XM_038568852
- UniProtKB: A0A8C0K7S0 (UniProtKB/TrEMBL)
Protein Domains
STI1   Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000030151 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030011654 UniProtKB/TrEMBL
  ENSCAFG00040017058 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000045670.3 UniProtKB/TrEMBL
  ENSCAFT00030021528.1 UniProtKB/TrEMBL
  ENSCAFT00040031487.1 UniProtKB/TrEMBL
Gene3D-CATH DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro STI1_HS-bd UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  Ubiquilin UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
KEGG Report cfa:485274 UniProtKB/TrEMBL
NCBI Gene UBQLNL ENTREZGENE
PANTHER UBIQUILIN UniProtKB/TrEMBL
  UBIQUILIN-LIKE PROTEIN UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
SMART STI1 UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A8C0K7S0 ENTREZGENE
  A0A8C0N3W0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NRV4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:48088 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-20 UBQLNL  ubiquilin like    ubiquilin-like  Symbol and/or name change 5135510 APPROVED