PLA2G4B (phospholipase A2 group IVB) - Rat Genome Database

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Gene: PLA2G4B (phospholipase A2 group IVB) Canis lupus familiaris
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Symbol: PLA2G4B
Name: phospholipase A2 group IVB
RGD ID: 12120165
Description: ENCODES a protein that exhibits lysophospholipase activity (ortholog); phospholipase A1 activity (ortholog); INVOLVED IN phosphatidylcholine acyl-chain remodeling (ortholog); phosphatidylethanolamine acyl-chain remodeling (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; alpha-linolenic acid metabolic pathway; antipyrine drug pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN early endosome membrane (ortholog); mitochondrial inner membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytosolic phospholipase A2 beta; phospholipase A2, group IVB (cytosolic)
RGD Orthologs
Human
Rat
Chinchilla
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,865,941 - 8,878,687 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,859,257 - 8,876,395 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,925,947 - 8,935,469 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,001,229 - 9,014,003 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,002,061 - 9,014,181 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,922,814 - 8,932,335 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,026,791 - 9,036,313 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,161,786 - 9,171,308 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PLA2G4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,865,941 - 8,878,687 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,859,257 - 8,876,395 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,925,947 - 8,935,469 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,001,229 - 9,014,003 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,002,061 - 9,014,181 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,922,814 - 8,932,335 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,026,791 - 9,036,313 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,161,786 - 9,171,308 (+)NCBIUU_Cfam_GSD_1.0
PLA2G4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,838,847 - 41,848,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,837,775 - 41,848,147 (+)EnsemblGRCh38hg38GRCh38
GRCh371542,131,045 - 42,140,341 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361542,131,011 - 42,140,346 (+)NCBINCBI36Build 36hg18NCBI36
Build 341539,907,605 - 39,927,630NCBI
Celera1518,898,654 - 18,907,988 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1518,979,399 - 18,988,734 (+)NCBIHuRef
CHM1_11542,249,484 - 42,258,819 (+)NCBICHM1_1
T2T-CHM13v2.01539,644,798 - 39,654,098 (+)NCBIT2T-CHM13v2.0
Pla2g4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,458,022 - 127,467,637 (+)NCBIGRCr8
mRatBN7.23107,004,238 - 107,013,853 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,005,489 - 107,013,853 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,680,642 - 110,689,006 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03119,276,197 - 119,284,561 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,936,590 - 116,944,954 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,824,919 - 111,833,526 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,825,162 - 111,834,210 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,372,716 - 118,382,163 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,540,155 - 106,548,519 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13106,429,577 - 106,444,575 (+)NCBI
Celera3105,914,984 - 105,923,348 (+)NCBICelera
Cytogenetic Map3q35NCBI
Pla2g4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,634,184 - 8,642,833 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,633,249 - 8,643,219 (+)NCBIChiLan1.0ChiLan1.0
Pla2g4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,296,128 - 87,306,698 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364715,145,502 - 5,153,498 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364715,145,736 - 5,153,930 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLA2G4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1129,514,346 - 129,524,313 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11129,514,801 - 129,524,365 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21144,556,107 - 144,567,434 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLA2G4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,137,643 - 41,147,384 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604899,854,872 - 99,864,616 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pla2g4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248049,016,487 - 9,026,621 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248049,017,154 - 9,026,977 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PLA2G4B
140 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000015456   ⟹   ENSCAFP00000014300
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl308,866,785 - 8,876,395 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000015461   ⟹   ENSCAFP00000014305
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl308,859,257 - 8,865,775 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000048065   ⟹   ENSCAFP00000041633
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl308,859,328 - 8,876,395 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053667   ⟹   ENSCAFP00845042168
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl309,002,061 - 9,014,181 (+)Ensembl
RefSeq Acc Id: NM_001204236   ⟹   NP_001191165
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1308,866,785 - 8,876,307 (+)NCBI
Dog10K_Boxer_Tasha308,925,947 - 8,935,469 (+)NCBI
ROS_Cfam_1.0309,002,061 - 9,011,583 (+)NCBI
UMICH_Zoey_3.1308,922,814 - 8,932,335 (+)NCBI
UNSW_CanFamBas_1.0309,026,791 - 9,036,313 (+)NCBI
UU_Cfam_GSD_1.0309,161,786 - 9,171,308 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038441735   ⟹   XP_038297663
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0309,003,981 - 9,014,003 (+)NCBI
RefSeq Acc Id: XR_005304511
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0309,001,229 - 9,014,003 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001191165 (Get FASTA)   NCBI Sequence Viewer  
  XP_038297663 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000014300.3
  ENSCAFP00030034882.1
  ENSCAFP00040018637.1
  ENSCAFP00845042168
  ENSCAFP00845042168.1
RefSeq Acc Id: NP_001191165   ⟸   NM_001204236
- UniProtKB: A0A8C0YVX1 (UniProtKB/TrEMBL),   A0A8I3QXI0 (UniProtKB/TrEMBL),   A0A8P0SER8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000014300   ⟸   ENSCAFT00000015456
Ensembl Acc Id: ENSCAFP00000014305   ⟸   ENSCAFT00000015461
Ensembl Acc Id: ENSCAFP00000041633   ⟸   ENSCAFT00000048065
RefSeq Acc Id: XP_038297663   ⟸   XM_038441735
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SER8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845042168   ⟸   ENSCAFT00845053667
Protein Domains
C2   PLA2c


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009735 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030021714 UniProtKB/TrEMBL
  ENSCAFG00040011523 UniProtKB/TrEMBL
  ENSCAFG00845030242 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015456.6 UniProtKB/TrEMBL
  ENSCAFT00030039980.1 UniProtKB/TrEMBL
  ENSCAFT00040021466.1 UniProtKB/TrEMBL
  ENSCAFT00845053667 ENTREZGENE
  ENSCAFT00845053667.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
  Cytosolic phospholipase A2 catalytic domain UniProtKB/TrEMBL
InterPro Acyl_Trfase/lysoPLipase UniProtKB/TrEMBL
  C2_cPLA2 UniProtKB/TrEMBL
  C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  cPLA2_C2 UniProtKB/TrEMBL
  LysoPLipase_cat_dom UniProtKB/TrEMBL
KEGG Report cfa:487512 UniProtKB/TrEMBL
NCBI Gene PLA2G4B ENTREZGENE
PANTHER CYTOSOLIC PHOSPHOLIPASE A2 UniProtKB/TrEMBL
  CYTOSOLIC PHOSPHOLIPASE A2 BETA UniProtKB/TrEMBL
Pfam cPLA2_C2 UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
  PLA2_B UniProtKB/TrEMBL
PROSITE PLA2C UniProtKB/TrEMBL
  PS50004 UniProtKB/TrEMBL
SMART PLAc UniProtKB/TrEMBL
  SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
  SSF52151 UniProtKB/TrEMBL
UniProt A0A8C0RQL2_CANLF UniProtKB/TrEMBL
  A0A8C0YVX1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QXI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SER8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-15 PLA2G4B  phospholipase A2 group IVB  PLA2G4B  phospholipase A2, group IVB (cytosolic)  Symbol and/or name change 19259463 PROVISIONAL