MRPS7 (mitochondrial ribosomal protein S7) - Rat Genome Database

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Gene: MRPS7 (mitochondrial ribosomal protein S7) Canis lupus familiaris
Analyze
Symbol: MRPS7
Name: mitochondrial ribosomal protein S7
RGD ID: 12097865
Description: ENCODES a protein that exhibits mRNA binding (inferred); rRNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN ribosomal small subunit assembly (inferred); translation (inferred); ASSOCIATED WITH Breast Neoplasms (ortholog); combined oxidative phosphorylation deficiency 34 (ortholog); genetic disease (ortholog); FOUND IN cytosolic small ribosomal subunit (inferred); mitochondrial small ribosomal subunit (inferred); ribonucleoprotein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 28S ribosomal protein S7, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,231,612 - 5,235,383 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,231,920 - 5,235,383 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,910,581 - 5,914,410 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,901,662 - 5,905,491 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,888,907 - 5,905,448 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,940,418 - 5,944,246 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,050,634 - 6,054,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,110,370 - 6,114,199 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MRPS7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,231,612 - 5,235,383 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,231,920 - 5,235,383 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,910,581 - 5,914,410 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,901,662 - 5,905,491 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,888,907 - 5,905,448 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,940,418 - 5,944,246 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,050,634 - 6,054,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,110,370 - 6,114,199 (-)NCBIUU_Cfam_GSD_1.0
MRPS7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,261,879 - 75,266,376 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,261,674 - 75,266,376 (+)EnsemblGRCh38hg38GRCh38
GRCh371773,257,960 - 73,262,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,769,385 - 70,774,049 (+)NCBINCBI36Build 36hg18NCBI36
Build 341770,769,384 - 70,774,049NCBI
Celera1769,850,098 - 69,854,805 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,667,941 - 68,672,651 (+)NCBIHuRef
CHM1_11773,322,329 - 73,327,038 (+)NCBICHM1_1
T2T-CHM13v2.01776,153,972 - 76,158,469 (+)NCBIT2T-CHM13v2.0
Mrps7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,494,966 - 115,498,862 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,494,751 - 115,498,862 (+)EnsemblGRCm39 Ensembl
GRCm3811115,604,140 - 115,608,036 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,603,925 - 115,608,036 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,465,465 - 115,468,938 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,420,241 - 115,423,714 (+)NCBIMGSCv36mm8
Celera11127,371,925 - 127,375,398 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.9NCBI
Mrps7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,342,642 - 101,345,790 (+)NCBIGRCr8
mRatBN7.210100,843,691 - 100,846,838 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,843,356 - 100,847,129 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,903,893 - 105,907,052 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,366,966 - 105,370,125 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,764,663 - 100,767,811 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,155,805 - 104,158,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,155,805 - 104,158,839 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,122,364 - 104,125,399 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,683,558 - 105,687,212 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,698,254 - 105,701,184 (+)NCBI
Celera1099,418,132 - 99,421,278 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Mrps7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555532,124,988 - 2,132,667 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555532,124,988 - 2,128,483 (+)NCBIChiLan1.0ChiLan1.0
MRPS7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,301,378 - 91,305,911 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,124,460 - 96,128,991 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,208,788 - 69,213,461 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,762,057 - 74,766,891 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,762,057 - 74,766,891 (+)Ensemblpanpan1.1panPan2
Mrps7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,859,933 - 5,863,296 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594548,480 - 556,130 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594548,480 - 552,026 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,052,063 - 6,055,668 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,052,109 - 6,055,669 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,813,908 - 5,817,178 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,407,080 - 46,411,753 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,404,792 - 46,412,037 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,176,801 - 17,181,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,073,354 - 5,076,797 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248015,073,341 - 5,077,280 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPS7
40 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000007647   ⟹   ENSCAFP00000007082
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl95,231,920 - 5,235,383 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845047947   ⟹   ENSCAFP00845037614
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl95,888,907 - 5,905,233 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845047988   ⟹   ENSCAFP00845037652
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl95,903,101 - 5,905,448 (-)Ensembl
RefSeq Acc Id: XM_038484941   ⟹   XP_038340869
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.195,940,418 - 5,944,246 (-)NCBI
RefSeq Acc Id: XM_038546631   ⟹   XP_038402559
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.096,110,370 - 6,114,199 (-)NCBI
RefSeq Acc Id: XM_038610622   ⟹   XP_038466550
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.096,050,634 - 6,054,463 (-)NCBI
RefSeq Acc Id: XM_038675751   ⟹   XP_038531679
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.095,901,662 - 5,905,491 (-)NCBI
RefSeq Acc Id: XM_846915   ⟹   XP_852008
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.195,231,612 - 5,235,383 (-)NCBI
Dog10K_Boxer_Tasha95,910,581 - 5,914,410 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_852008   ⟸   XM_846915
- UniProtKB: A0A8C0JH06 (UniProtKB/TrEMBL),   A0A8C0M861 (UniProtKB/TrEMBL),   A0A8I3Q0A8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000007082   ⟸   ENSCAFT00000007647
RefSeq Acc Id: XP_038340869   ⟸   XM_038484941
RefSeq Acc Id: XP_038466550   ⟸   XM_038610622
RefSeq Acc Id: XP_038531679   ⟸   XM_038675751
- UniProtKB: A0A8C0JH06 (UniProtKB/TrEMBL),   A0A8C0M861 (UniProtKB/TrEMBL),   A0A8I3Q0A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402559   ⟸   XM_038546631
- UniProtKB: A0A8C0JH06 (UniProtKB/TrEMBL),   A0A8C0M861 (UniProtKB/TrEMBL),   A0A8I3Q0A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845037614   ⟸   ENSCAFT00845047947
RefSeq Acc Id: ENSCAFP00845037652   ⟸   ENSCAFT00845047988
Protein Domains
Small ribosomal subunit protein uS7

Promoters
RGD ID:13684430
Promoter ID:EPDNEW_C2498
Type:multiple initiation site
Name:MRPS7_1
Description:mitochondrial ribosomal protein S7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.195,235,165 - 5,235,225EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004752 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030003248 UniProtKB/TrEMBL
  ENSCAFG00040003346 UniProtKB/TrEMBL
  ENSCAFG00845027208 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007647.4 UniProtKB/TrEMBL
  ENSCAFT00000101751.1 UniProtKB/TrEMBL
  ENSCAFT00030006040.1 UniProtKB/TrEMBL
  ENSCAFT00040006368.1 UniProtKB/TrEMBL
  ENSCAFT00845047947 ENTREZGENE
  ENSCAFT00845047947.1 UniProtKB/TrEMBL
  ENSCAFT00845047988.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.455.10 UniProtKB/TrEMBL
InterPro Ribosomal_S5/S7 UniProtKB/TrEMBL
  Ribosomal_S7_dom UniProtKB/TrEMBL
  Ribosomal_S7_dom_sf UniProtKB/TrEMBL
KEGG Report cfa:609623 UniProtKB/TrEMBL
NCBI Gene MRPS7 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S7, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR11205 UniProtKB/TrEMBL
Pfam Ribosomal_S7 UniProtKB/TrEMBL
Superfamily-SCOP SSF47973 UniProtKB/TrEMBL
UniProt A0A8C0JH06 ENTREZGENE
  A0A8C0M861 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PTU3_CANLF UniProtKB/TrEMBL
  A0A8I3Q0A8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N7I2_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:43426 ENTREZGENE