TMEM97 (transmembrane protein 97) - Rat Genome Database

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Gene: TMEM97 (transmembrane protein 97) Canis lupus familiaris
Analyze
Symbol: TMEM97
Name: transmembrane protein 97
RGD ID: 12068176
Description: ENCODES a protein that exhibits oxysterol binding (inferred); INVOLVED IN cholesterol homeostasis (inferred); positive regulation of lipoprotein transport (inferred); positive regulation of wound healing (inferred); FOUND IN endoplasmic reticulum (inferred); lysosome (inferred); membrane (inferred); INTERACTS WITH bisphenol A
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sigma intracellular receptor 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,572,855 - 42,581,012 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,572,889 - 42,579,947 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,729,777 - 41,737,940 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,391,799 - 43,400,150 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,391,761 - 43,400,631 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,176,287 - 42,184,423 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,467,497 - 42,475,646 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,544,521 - 42,552,694 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMEM97
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,572,855 - 42,581,012 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,572,889 - 42,579,947 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,729,777 - 41,737,940 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,391,799 - 43,400,150 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,391,761 - 43,400,631 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,176,287 - 42,184,423 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,467,497 - 42,475,646 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,544,521 - 42,552,694 (+)NCBIUU_Cfam_GSD_1.0
TMEM97
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,319,200 - 28,328,685 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1728,319,200 - 28,328,685 (+)EnsemblGRCh38hg38GRCh38
GRCh371726,646,226 - 26,655,711 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,670,248 - 23,679,838 (+)NCBINCBI36Build 36hg18NCBI36
Celera1723,507,857 - 23,517,453 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1722,854,509 - 22,864,105 (+)NCBIHuRef
CHM1_11726,709,006 - 26,718,604 (+)NCBICHM1_1
T2T-CHM13v2.01729,261,048 - 29,270,533 (+)NCBIT2T-CHM13v2.0
Tmem97
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,432,643 - 78,441,561 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,432,643 - 78,441,603 (-)EnsemblGRCm39 Ensembl
GRCm381178,541,817 - 78,550,735 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,541,817 - 78,550,777 (-)EnsemblGRCm38mm10GRCm38
MGSCv371178,355,319 - 78,364,237 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,358,012 - 78,366,930 (-)NCBIMGSCv36mm8
Celera1188,173,890 - 88,182,808 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Tmem97
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,936,276 - 63,945,359 (-)NCBIGRCr8
mRatBN7.21063,438,228 - 63,447,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,438,222 - 63,589,730 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1068,070,852 - 68,079,944 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,576,183 - 67,585,275 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01063,045,738 - 63,054,825 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,811,455 - 65,820,538 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,811,456 - 65,820,538 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01065,823,082 - 65,832,165 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,652,641 - 64,661,724 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11064,666,264 - 64,675,347 (-)NCBI
Celera1062,414,772 - 62,423,855 (-)NCBICelera
Cytogenetic Map10q25NCBI
Tmem97
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,807,850 - 4,817,006 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,807,850 - 4,817,006 (-)NCBIChiLan1.0ChiLan1.0
TMEM97
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21936,130,408 - 36,140,584 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11738,010,800 - 38,020,975 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01728,446,213 - 28,455,332 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,948,225 - 28,957,345 (-)NCBIpanpan1.1PanPan1.1panPan2
Tmem97
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,597,080 - 41,606,883 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,475,256 - 4,484,643 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,475,314 - 4,484,385 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM97
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,604,021 - 44,609,999 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,603,764 - 44,609,935 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TMEM97
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,044,208 - 22,092,969 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660758,035,869 - 8,043,735 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem97
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624786915,640 - 928,022 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624786915,839 - 928,022 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM97
109 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000029614   ⟹   ENSCAFP00000027524
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl942,572,889 - 42,579,947 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000083722   ⟹   ENSCAFP00000053477
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl942,578,427 - 42,579,947 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845027176   ⟹   ENSCAFP00845021380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl943,391,761 - 43,400,631 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845027188   ⟹   ENSCAFP00845021388
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl943,397,561 - 43,400,631 (+)Ensembl
RefSeq Acc Id: XM_038486384   ⟹   XP_038342312
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1942,176,287 - 42,184,423 (+)NCBI
RefSeq Acc Id: XM_038548222   ⟹   XP_038404150
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0942,544,521 - 42,552,694 (+)NCBI
RefSeq Acc Id: XM_038612187   ⟹   XP_038468115
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0942,467,497 - 42,475,646 (+)NCBI
RefSeq Acc Id: XM_038677444   ⟹   XP_038533372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0943,391,799 - 43,400,150 (+)NCBI
RefSeq Acc Id: XM_848469   ⟹   XP_853562
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1942,572,855 - 42,581,012 (+)NCBI
Dog10K_Boxer_Tasha941,729,777 - 41,737,940 (+)NCBI
Sequence:
RefSeq Acc Id: XP_853562   ⟸   XM_848469
- UniProtKB: A0A8I3NWV4 (UniProtKB/TrEMBL),   A0A8P0TJE5 (UniProtKB/TrEMBL),   A0A8C0Z2I8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000027524   ⟸   ENSCAFT00000029614
Ensembl Acc Id: ENSCAFP00000053477   ⟸   ENSCAFT00000083722
RefSeq Acc Id: XP_038342312   ⟸   XM_038486384
RefSeq Acc Id: XP_038468115   ⟸   XM_038612187
RefSeq Acc Id: XP_038533372   ⟸   XM_038677444
- UniProtKB: A0A8I3NWV4 (UniProtKB/TrEMBL),   A0A8P0TJE5 (UniProtKB/TrEMBL),   A0A8C0Z2I8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038404150   ⟸   XM_038548222
- UniProtKB: A0A8C0Z2I8 (UniProtKB/TrEMBL),   A0A8I3NWV4 (UniProtKB/TrEMBL),   A0A8P0TJE5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845021388   ⟸   ENSCAFT00845027188
Ensembl Acc Id: ENSCAFP00845021380   ⟸   ENSCAFT00845027176
Protein Domains
EXPERA

Promoters
RGD ID:13684670
Promoter ID:EPDNEW_C2736
Type:initiation region
Name:TMEM97_1
Description:transmembrane protein 97
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1942,572,870 - 42,572,930EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018655 Ensembl
  ENSCAFG00000053741 UniProtKB/TrEMBL
  ENSCAFG00030014092 UniProtKB/TrEMBL
  ENSCAFG00040019954 UniProtKB/TrEMBL
  ENSCAFG00845015218 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000099193.1 UniProtKB/TrEMBL
  ENSCAFT00030026103.1 UniProtKB/TrEMBL
  ENSCAFT00040036890.1 UniProtKB/TrEMBL
  ENSCAFT00845027176 ENTREZGENE
  ENSCAFT00845027176.1 UniProtKB/TrEMBL
  ENSCAFT00845027188.1 UniProtKB/TrEMBL
InterPro EXPERA UniProtKB/TrEMBL
  Sigma-2_receptor-like UniProtKB/TrEMBL
  Sigma2_recept UniProtKB/TrEMBL
KEGG Report cfa:610900 UniProtKB/TrEMBL
NCBI Gene TMEM97 ENTREZGENE
PANTHER SIGMA INTRACELLULAR RECEPTOR 2 UniProtKB/TrEMBL
  SIGMA INTRACELLULAR RECEPTOR 2 UniProtKB/TrEMBL
Pfam EBP UniProtKB/TrEMBL
PIRSF TMP_97_prd UniProtKB/TrEMBL
PROSITE EXPERA UniProtKB/TrEMBL
UniProt A0A8C0Z2I8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NKM8_CANLF UniProtKB/TrEMBL
  A0A8I3NWV4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TJE5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47617 ENTREZGENE