VPS26C (VPS26 endosomal protein sorting factor C) - Rat Genome Database

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Gene: VPS26C (VPS26 endosomal protein sorting factor C) Canis lupus familiaris
Analyze
Symbol: VPS26C
Name: VPS26 endosomal protein sorting factor C
RGD ID: 12065174
Description: INVOLVED IN endocytic recycling (inferred); intracellular protein transport (inferred); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); epilepsy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Down syndrome critical region gene 3; Down syndrome critical region protein 3; DSCR3; DSCR3 arrestin fold containing; vacuolar protein sorting-associated protein 26C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13132,344,908 - 32,427,741 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3132,382,686 - 32,427,650 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3131,432,370 - 31,488,852 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03131,675,571 - 31,732,940 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3131,687,734 - 31,732,850 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13131,554,194 - 31,598,938 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03131,555,072 - 31,612,211 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03132,058,125 - 32,102,623 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
VPS26C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13132,344,908 - 32,427,741 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3132,382,686 - 32,427,650 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3131,432,370 - 31,488,852 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03131,675,571 - 31,732,940 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3131,687,734 - 31,732,850 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13131,554,194 - 31,598,938 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03131,555,072 - 31,612,211 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03132,058,125 - 32,102,623 (-)NCBIUU_Cfam_GSD_1.0
VPS26C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382137,223,420 - 37,268,108 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2137,223,420 - 37,267,919 (-)EnsemblGRCh38hg38GRCh38
GRCh372138,595,721 - 38,640,409 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362137,517,596 - 37,561,703 (-)NCBINCBI36Build 36hg18NCBI36
Build 342137,517,595 - 37,561,703NCBI
Celera2123,794,111 - 23,838,219 (-)NCBICelera
Cytogenetic Map21q22.13NCBI
HuRef2124,071,503 - 24,115,290 (-)NCBIHuRef
CHM1_12138,157,446 - 38,201,548 (-)NCBICHM1_1
T2T-CHM13v2.02135,605,645 - 35,650,315 (-)NCBIT2T-CHM13v2.0
Vps26c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391694,298,583 - 94,327,488 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1694,298,642 - 94,327,689 (-)EnsemblGRCm39 Ensembl
GRCm381694,497,724 - 94,526,629 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1694,497,783 - 94,526,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv371694,719,331 - 94,748,236 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361694,606,586 - 94,635,241 (-)NCBIMGSCv36mm8
Celera1695,585,402 - 95,614,447 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1655.23NCBI
Vps26c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,283,764 - 47,311,105 (-)NCBIGRCr8
mRatBN7.21133,813,467 - 33,841,883 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,792,389 - 33,841,447 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1142,471,424 - 42,498,809 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,142,782 - 35,170,167 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01134,288,689 - 34,315,985 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01134,764,053 - 34,792,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1134,764,721 - 34,791,993 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01138,355,282 - 38,384,372 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41134,778,324 - 34,803,052 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11134,834,415 - 34,859,649 (-)NCBI
Celera1134,609,038 - 34,636,294 (+)NCBICelera
Cytogenetic Map11q11NCBI
Vps26c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540736,357,366 - 36,381,904 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540736,357,366 - 36,381,904 (-)NCBIChiLan1.0ChiLan1.0
VPS26C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22233,337,669 - 33,384,380 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12128,197,833 - 28,243,183 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02123,587,160 - 23,632,510 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12136,941,462 - 36,986,220 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2136,941,462 - 36,986,228 (-)Ensemblpanpan1.1panPan2
Vps26c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497131,902,300 - 31,942,453 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365005,525,522 - 5,566,073 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365005,525,358 - 5,565,523 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS26C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13200,869,167 - 200,926,108 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113200,869,161 - 200,927,004 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213210,991,594 - 211,046,845 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VPS26C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1281,187,163 - 81,231,780 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl281,189,294 - 81,231,330 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660548,990,300 - 9,078,100 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps26c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474526,377,280 - 26,408,907 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474526,377,806 - 26,408,595 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VPS26C
1132 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005638908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022413345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002621826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002621827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002621828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002621829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002621830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005305447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005416088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000015549   ⟹   ENSCAFP00000014387
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3132,382,686 - 32,427,650 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000061633   ⟹   ENSCAFP00000065671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3132,382,686 - 32,427,646 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000067210   ⟹   ENSCAFP00000054965
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3132,382,686 - 32,427,646 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000071074   ⟹   ENSCAFP00000046860
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3132,382,825 - 32,427,650 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000075567   ⟹   ENSCAFP00000046632
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3132,382,686 - 32,422,983 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000090687   ⟹   ENSCAFP00000046257
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3132,382,686 - 32,427,650 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845050560   ⟹   ENSCAFP00845039638
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3131,687,734 - 31,732,850 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845050597   ⟹   ENSCAFP00845039667
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3131,687,734 - 31,732,850 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845050625   ⟹   ENSCAFP00845039685
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3131,687,734 - 31,732,850 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845050644   ⟹   ENSCAFP00845039701
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3131,687,734 - 31,732,846 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845050662   ⟹   ENSCAFP00845039717
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3131,687,734 - 31,732,846 (-)Ensembl
RefSeq Acc Id: XM_005638908   ⟹   XP_005638965
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13132,382,696 - 32,427,741 (-)NCBI
Dog10K_Boxer_Tasha3131,444,461 - 31,488,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022413345   ⟹   XP_022269053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13132,386,255 - 32,427,741 (-)NCBI
Dog10K_Boxer_Tasha3131,447,819 - 31,488,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038443488   ⟹   XP_038299416
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03131,687,665 - 31,732,940 (-)NCBI
RefSeq Acc Id: XM_038443489   ⟹   XP_038299417
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03131,691,064 - 31,732,940 (-)NCBI
RefSeq Acc Id: XM_038461718   ⟹   XP_038317646
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3131,444,461 - 31,484,016 (-)NCBI
RefSeq Acc Id: XM_038517901   ⟹   XP_038373829
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13131,554,194 - 31,598,938 (-)NCBI
RefSeq Acc Id: XM_038517902   ⟹   XP_038373830
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13131,554,194 - 31,594,117 (-)NCBI
RefSeq Acc Id: XM_038517903   ⟹   XP_038373831
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13131,557,547 - 31,598,938 (-)NCBI
RefSeq Acc Id: XM_038581469   ⟹   XP_038437397
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03132,058,125 - 32,102,623 (-)NCBI
RefSeq Acc Id: XM_038581470   ⟹   XP_038437398
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03132,058,125 - 32,097,776 (-)NCBI
RefSeq Acc Id: XM_038581471   ⟹   XP_038437399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03132,061,489 - 32,102,623 (-)NCBI
RefSeq Acc Id: XM_038645850   ⟹   XP_038501778
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03131,567,167 - 31,612,211 (-)NCBI
RefSeq Acc Id: XM_038645851   ⟹   XP_038501779
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03131,567,167 - 31,607,356 (-)NCBI
RefSeq Acc Id: XM_038645852   ⟹   XP_038501780
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03131,570,552 - 31,612,211 (-)NCBI
RefSeq Acc Id: XR_002621826
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13132,370,097 - 32,427,741 (-)NCBI
Dog10K_Boxer_Tasha3131,432,370 - 31,488,852 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005305447
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03131,675,571 - 31,732,940 (-)NCBI
RefSeq Acc Id: XR_005416088
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03131,555,072 - 31,612,211 (-)NCBI
RefSeq Acc Id: XP_005638965   ⟸   XM_005638908
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LNK0 (UniProtKB/TrEMBL),   A0A8C0T9X7 (UniProtKB/TrEMBL),   A0A8I3SBK8 (UniProtKB/TrEMBL),   A0A8C0TDB0 (UniProtKB/TrEMBL),   A0A8I3Q191 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022269053   ⟸   XM_022413345
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCAFP00000014387   ⟸   ENSCAFT00000015549
Ensembl Acc Id: ENSCAFP00000054965   ⟸   ENSCAFT00000067210
Ensembl Acc Id: ENSCAFP00000046257   ⟸   ENSCAFT00000090687
Ensembl Acc Id: ENSCAFP00000046632   ⟸   ENSCAFT00000075567
Ensembl Acc Id: ENSCAFP00000046860   ⟸   ENSCAFT00000071074
Ensembl Acc Id: ENSCAFP00000065671   ⟸   ENSCAFT00000061633
RefSeq Acc Id: XP_038373829   ⟸   XM_038517901
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038373830   ⟸   XM_038517902
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038373831   ⟸   XM_038517903
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038501778   ⟸   XM_038645850
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038501779   ⟸   XM_038645851
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038501780   ⟸   XM_038645852
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038299416   ⟸   XM_038443488
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LNK0 (UniProtKB/TrEMBL),   A0A8C0T9X7 (UniProtKB/TrEMBL),   A0A8I3SBK8 (UniProtKB/TrEMBL),   A0A8C0TDB0 (UniProtKB/TrEMBL),   A0A8I3Q191 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038299417   ⟸   XM_038443489
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038317646   ⟸   XM_038461718
- Peptide Label: isoform X6
- UniProtKB: A0A8C0TDB0 (UniProtKB/TrEMBL),   A0A8I3Q191 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437397   ⟸   XM_038581469
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LNK0 (UniProtKB/TrEMBL),   A0A8C0T9X7 (UniProtKB/TrEMBL),   A0A8C0TDB0 (UniProtKB/TrEMBL),   A0A8I3Q191 (UniProtKB/TrEMBL),   A0A8I3SBK8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437398   ⟸   XM_038581470
- Peptide Label: isoform X5
- UniProtKB: A0A8C0TDB0 (UniProtKB/TrEMBL),   A0A8I3Q191 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038437399   ⟸   XM_038581471
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCAFP00845039717   ⟸   ENSCAFT00845050662
Ensembl Acc Id: ENSCAFP00845039638   ⟸   ENSCAFT00845050560
Ensembl Acc Id: ENSCAFP00845039701   ⟸   ENSCAFT00845050644
Ensembl Acc Id: ENSCAFP00845039685   ⟸   ENSCAFT00845050625
Ensembl Acc Id: ENSCAFP00845039667   ⟸   ENSCAFT00845050597

Promoters
RGD ID:13688637
Promoter ID:EPDNEW_C6707
Type:multiple initiation site
Name:VPS26C_1
Description:VPS26 endosomal protein sorting factor C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13132,427,686 - 32,427,746EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009792 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025569 UniProtKB/TrEMBL
  ENSCAFG00040020902 UniProtKB/TrEMBL
  ENSCAFG00845028583 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015549.5 UniProtKB/TrEMBL
  ENSCAFT00000061633.2 UniProtKB/TrEMBL
  ENSCAFT00000067210.2 UniProtKB/TrEMBL
  ENSCAFT00000090687.2 UniProtKB/TrEMBL
  ENSCAFT00030047232.1 UniProtKB/TrEMBL
  ENSCAFT00030047249.1 UniProtKB/TrEMBL
  ENSCAFT00040038948.1 UniProtKB/TrEMBL
  ENSCAFT00040039005.1 UniProtKB/TrEMBL
  ENSCAFT00040039035.1 UniProtKB/TrEMBL
  ENSCAFT00040039057.1 UniProtKB/TrEMBL
  ENSCAFT00040039094.1 UniProtKB/TrEMBL
  ENSCAFT00845050560 ENTREZGENE
  ENSCAFT00845050560.1 UniProtKB/TrEMBL
  ENSCAFT00845050597.1 UniProtKB/TrEMBL
  ENSCAFT00845050625.1 UniProtKB/TrEMBL
  ENSCAFT00845050644.1 UniProtKB/TrEMBL
  ENSCAFT00845050662.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.640 UniProtKB/TrEMBL
InterPro Arrestin-like_C UniProtKB/TrEMBL
  Vps26-related UniProtKB/TrEMBL
KEGG Report cfa:610353 UniProtKB/TrEMBL
NCBI Gene DSCR3 ENTREZGENE
PANTHER PTHR12233 UniProtKB/TrEMBL
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 26C UniProtKB/TrEMBL
Pfam Vps26 UniProtKB/TrEMBL
UniProt A0A8C0LNK0 ENTREZGENE
  A0A8C0PKN2_CANLF UniProtKB/TrEMBL
  A0A8C0PX92_CANLF UniProtKB/TrEMBL
  A0A8C0T9X7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TDB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TDK5_CANLF UniProtKB/TrEMBL
  A0A8I3PX32_CANLF UniProtKB/TrEMBL
  A0A8I3PZ85_CANLF UniProtKB/TrEMBL
  A0A8I3Q0T3_CANLF UniProtKB/TrEMBL
  A0A8I3Q191 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3SBK8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:40103 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-01-23 VPS26C  VPS26 endosomal protein sorting factor C  DSCR3  DSCR3 arrestin fold containing  Symbol and/or name change 5135510 APPROVED