MIR30D (microRNA mir-30d) - Rat Genome Database

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Gene: MIR30D (microRNA mir-30d) Canis lupus familiaris
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Symbol: MIR30D (Ensembl: cfa-mir-30d)
Name: microRNA mir-30d (Ensembl:cfa-mir-30d)
RGD ID: 12054772
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-30d; microRNA 30d
RGD Orthologs
Human
Mouse
Rat
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11330,910,306 - 30,910,365 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1330,910,306 - 30,910,365 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1330,885,535 - 30,885,594 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01331,276,123 - 31,276,182 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11330,995,654 - 30,995,713 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01331,094,620 - 31,094,679 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01331,444,847 - 31,444,906 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:18392026  


Genomics

Comparative Map Data
MIR30D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11330,910,306 - 30,910,365 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1330,910,306 - 30,910,365 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1330,885,535 - 30,885,594 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01331,276,123 - 31,276,182 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11330,995,654 - 30,995,713 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01331,094,620 - 31,094,679 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01331,444,847 - 31,444,906 (-)NCBIUU_Cfam_GSD_1.0
MIR30D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388134,804,876 - 134,804,945 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8134,804,876 - 134,804,945 (-)EnsemblGRCh38hg38GRCh38
GRCh378135,817,119 - 135,817,188 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368135,886,300 - 135,886,369 (-)NCBINCBI36Build 36hg18NCBI36
Celera8131,989,860 - 131,989,929 (-)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8131,132,816 - 131,132,885 (-)NCBIHuRef
CHM1_18135,859,237 - 135,859,306 (-)NCBICHM1_1
T2T-CHM13v2.08135,922,767 - 135,922,836 (-)NCBIT2T-CHM13v2.0
Mir30d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391568,213,057 - 68,213,138 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1568,213,057 - 68,213,138 (-)EnsemblGRCm39 Ensembl
GRCm381568,341,208 - 68,341,289 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1568,341,208 - 68,341,289 (-)EnsemblGRCm38mm10GRCm38
MGSCv371568,172,770 - 68,172,851 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1569,857,252 - 69,857,333 (-)NCBICelera
Cytogenetic Map15D2NCBI
cM Map1529.44NCBI
Mir30d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87102,025,345 - 102,025,426 (-)NCBIGRCr8
mRatBN7.27100,136,391 - 100,136,472 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7100,136,391 - 100,136,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7101,908,591 - 101,908,672 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07104,110,268 - 104,110,349 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07104,029,578 - 104,029,659 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07109,286,463 - 109,286,544 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7109,286,463 - 109,286,544 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07109,228,641 - 109,228,722 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera796,647,647 - 96,647,728 (-)NCBICelera
Cytogenetic Map7q34NCBI
MIR30D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl46,948,669 - 6,948,747 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.146,948,669 - 6,948,747 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.246,713,518 - 6,713,596 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00000032719
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1330,910,306 - 30,910,365 (-)Ensembl
RefSeq Acc Id: NR_049243
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11330,910,306 - 30,910,365 (-)NCBI
Dog10K_Boxer_Tasha1330,885,535 - 30,885,594 (-)NCBI
ROS_Cfam_1.01331,276,123 - 31,276,182 (-)NCBI
UMICH_Zoey_3.11330,995,654 - 30,995,713 (-)NCBI
UNSW_CanFamBas_1.01331,094,620 - 31,094,679 (-)NCBI
UU_Cfam_GSD_1.01331,444,847 - 31,444,906 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000020612 Ensembl
  ENSCAFG00845010864 ENTREZGENE
Ensembl Transcript ENSCAFT00845019326 ENTREZGENE
miRBase MI0008012 ENTREZGENE
NCBI Gene MIR30D ENTREZGENE
RNAcentral URS00004150D5 RNACentral
  URS00007E4766 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR30D  microRNA mir-30d    microRNA 30d  Symbol and/or name change 5135510 APPROVED