STOX1 (storkhead box 1) - Rat Genome Database

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Gene: STOX1 (storkhead box 1) Pan paniscus
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Symbol: STOX1
Name: storkhead box 1
RGD ID: 12039858
Description: ENCODES a protein that exhibits RNA polymerase II transcription regulatory region sequence-specific DNA binding (inferred); INVOLVED IN positive regulation of cyclin-dependent protein kinase activity (ortholog); positive regulation of peptidyl-serine phosphorylation (ortholog); positive regulation of peptidyl-threonine phosphorylation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Cardiomegaly (ortholog); pre-eclampsia (ortholog); FOUND IN cell cortex (inferred); centrosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: storkhead-box protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2880,983,717 - 81,038,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11080,989,038 - 81,043,890 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01065,304,649 - 65,359,501 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11067,882,669 - 67,896,410 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1067,882,654 - 67,894,039 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
STOX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2880,983,717 - 81,038,569 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11080,989,038 - 81,043,890 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01065,304,649 - 65,359,501 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11067,882,669 - 67,896,410 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1067,882,654 - 67,894,039 (+)Ensemblpanpan1.1panPan2
STOX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381068,827,531 - 68,895,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1068,827,531 - 68,895,432 (+)EnsemblGRCh38hg38GRCh38
GRCh371070,587,288 - 70,655,188 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361070,257,387 - 70,322,821 (+)NCBINCBI36Build 36hg18NCBI36
Celera1063,863,183 - 63,931,097 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1064,588,712 - 64,656,710 (+)NCBIHuRef
CHM1_11070,869,061 - 70,936,835 (+)NCBICHM1_1
T2T-CHM13v2.01069,696,680 - 69,764,246 (+)NCBIT2T-CHM13v2.0
Stox1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,494,822 - 62,561,907 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,494,822 - 62,561,907 (-)EnsemblGRCm39 Ensembl
GRCm381062,659,043 - 62,726,094 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,659,043 - 62,726,128 (-)EnsemblGRCm38mm10GRCm38
MGSCv371062,122,170 - 62,188,847 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361062,054,400 - 62,121,485 (-)NCBIMGSCv36mm8
Celera1063,761,116 - 63,769,635 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.45NCBI
Stox1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82031,140,993 - 31,209,126 (-)NCBIGRCr8
mRatBN7.22030,598,284 - 30,666,371 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,598,168 - 30,666,939 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2031,609,607 - 31,677,074 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02031,000,521 - 31,067,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,737,328 - 31,804,804 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02032,276,857 - 32,353,677 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2032,276,658 - 32,353,677 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02034,061,421 - 34,137,583 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,904,966 - 29,977,218 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12029,918,765 - 29,991,018 (-)NCBI
Celera2032,017,664 - 32,084,673 (-)NCBICelera
Cytogenetic Map20q11NCBI
Stox1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543722,124,272 - 22,165,848 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543722,122,296 - 22,165,848 (-)NCBIChiLan1.0ChiLan1.0
STOX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,013,893 - 20,065,480 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,014,007 - 20,060,394 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha420,144,988 - 20,196,158 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0420,286,922 - 20,338,157 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl420,286,792 - 20,344,928 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1420,187,255 - 20,238,841 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0420,390,704 - 20,441,873 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0420,733,585 - 20,784,970 (+)NCBIUU_Cfam_GSD_1.0
Stox1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721361,006,877 - 61,061,338 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365219,500,152 - 9,554,082 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365219,500,443 - 9,554,082 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STOX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1471,928,399 - 71,985,233 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11471,927,387 - 71,985,239 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21477,943,033 - 78,000,558 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STOX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1962,518,872 - 62,589,107 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl962,524,049 - 62,533,821 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604823,265,596 - 23,336,604 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stox1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247543,111,269 - 3,122,425 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247543,110,951 - 3,119,511 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000046852   ⟹   ENSPPAP00000024027
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1067,882,654 - 67,894,039 (+)Ensembl
RefSeq Acc Id: XM_034930696   ⟹   XP_034786587
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2880,983,725 - 81,038,569 (+)NCBI
NHGRI_mPanPan11080,989,048 - 81,043,890 (+)NCBI
Mhudiblu_PPA_v01065,304,657 - 65,359,501 (+)NCBI
RefSeq Acc Id: XM_034930697   ⟹   XP_034786588
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2880,983,725 - 81,038,569 (+)NCBI
NHGRI_mPanPan11080,989,047 - 81,043,890 (+)NCBI
Mhudiblu_PPA_v01065,304,656 - 65,359,501 (+)NCBI
RefSeq Acc Id: XM_034930698   ⟹   XP_034786589
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2880,983,717 - 81,038,569 (+)NCBI
NHGRI_mPanPan11080,989,038 - 81,043,890 (+)NCBI
Mhudiblu_PPA_v01065,304,649 - 65,359,501 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034786587 (Get FASTA)   NCBI Sequence Viewer  
  XP_034786588 (Get FASTA)   NCBI Sequence Viewer  
  XP_034786589 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000024027.1
RefSeq Acc Id: XP_034786589   ⟸   XM_034930698
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034786588   ⟸   XM_034930697
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034786587   ⟸   XM_034930696
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B352 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000024027   ⟸   ENSPPAT00000046852
Protein Domains
Winged helix Storkhead-box1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035157 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046852.1 UniProtKB/TrEMBL
InterPro Storkhead-box_winged-helix UniProtKB/TrEMBL
  STOX1/2 UniProtKB/TrEMBL
NCBI Gene STOX1 ENTREZGENE
PANTHER PTHR22437 UniProtKB/TrEMBL
  STORKHEAD-BOX PROTEIN 1 UniProtKB/TrEMBL
Pfam Stork_head UniProtKB/TrEMBL
UniProt A0A2R9B352 ENTREZGENE, UniProtKB/TrEMBL