ZMIZ1 (zinc finger MIZ-type containing 1) - Rat Genome Database

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Gene: ZMIZ1 (zinc finger MIZ-type containing 1) Pan paniscus
Analyze
Symbol: ZMIZ1
Name: zinc finger MIZ-type containing 1
RGD ID: 12038880
Description: ENCODES a protein that exhibits SMAD binding (inferred); SUMO ligase activity (inferred); transcription coactivator activity (inferred); INVOLVED IN artery morphogenesis (ortholog); cellular senescence (ortholog); developmental growth (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); celiac disease (ortholog); Colorectal Neoplasms (ortholog); FOUND IN chromatin (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger MIZ domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2891,209,993 - 91,458,016 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11091,215,349 - 91,463,340 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01075,581,794 - 75,829,748 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11078,294,867 - 78,492,484 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1078,294,867 - 78,492,475 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
cytoplasm  (IEA)
cytosol  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZMIZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2891,209,993 - 91,458,016 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11091,215,349 - 91,463,340 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01075,581,794 - 75,829,748 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11078,294,867 - 78,492,484 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1078,294,867 - 78,492,475 (+)Ensemblpanpan1.1panPan2
ZMIZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381079,068,966 - 79,316,519 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1079,068,966 - 79,316,519 (+)EnsemblGRCh38hg38GRCh38
GRCh371080,828,723 - 81,076,276 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361080,631,347 - 80,746,279 (+)NCBINCBI36Build 36hg18NCBI36
Build 341080,591,875 - 80,746,279NCBI
Celera1074,115,464 - 74,363,006 (+)NCBICelera
Cytogenetic Map10q22.3NCBI
HuRef1074,824,464 - 75,071,974 (+)NCBIHuRef
CHM1_11081,112,306 - 81,359,830 (+)NCBICHM1_1
T2T-CHM13v2.01079,938,246 - 80,185,863 (+)NCBIT2T-CHM13v2.0
Zmiz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391425,458,299 - 25,667,167 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1425,459,609 - 25,667,167 (+)EnsemblGRCm39 Ensembl
GRCm381425,457,875 - 25,666,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1425,459,185 - 25,666,743 (+)EnsemblGRCm38mm10GRCm38
MGSCv371426,278,778 - 26,484,205 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361424,292,476 - 24,497,903 (+)NCBIMGSCv36mm8
Celera1421,781,141 - 21,988,873 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1415.03NCBI
Zmiz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8161,033,983 - 1,239,425 (+)NCBIGRCr8
mRatBN7.2161,027,083 - 1,232,616 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,027,325 - 1,232,597 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx161,033,643 - 1,238,925 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0162,179,510 - 2,384,782 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0161,040,338 - 1,245,537 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0161,749,191 - 1,954,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl161,749,191 - 1,954,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0161,726,702 - 1,932,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4161,037,882 - 1,245,259 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1161,149,337 - 1,241,515 (+)NCBI
Celera161,006,205 - 1,210,417 (+)NCBICelera
Cytogenetic Map16p16NCBI
Zmiz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543713,337,825 - 13,494,889 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543713,338,077 - 13,534,283 (-)NCBIChiLan1.0ChiLan1.0
ZMIZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1428,807,368 - 29,035,946 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl428,854,908 - 29,045,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha428,932,137 - 29,163,079 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0429,108,747 - 29,340,059 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl429,156,127 - 29,339,925 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1428,979,966 - 29,210,834 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0429,182,352 - 29,413,143 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0429,535,577 - 29,766,873 (+)NCBIUU_Cfam_GSD_1.0
Zmiz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721351,952,014 - 52,171,581 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936521444,598 - 581,800 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936521444,599 - 664,533 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMIZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1481,455,127 - 81,647,939 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11481,409,067 - 81,647,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21488,066,226 - 88,307,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZMIZ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1952,150,810 - 52,414,793 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl952,148,075 - 52,259,728 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604812,499,845 - 12,741,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmiz1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475412,145,570 - 12,299,318 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475412,106,828 - 12,299,188 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000052432   ⟹   ENSPPAP00000029582
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1078,294,867 - 78,488,885 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000052455   ⟹   ENSPPAP00000029605
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1078,377,229 - 78,492,475 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000052485   ⟹   ENSPPAP00000029635
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1078,461,202 - 78,488,719 (+)Ensembl
RefSeq Acc Id: XM_034930952   ⟹   XP_034786843
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2891,209,993 - 91,458,016 (+)NCBI
NHGRI_mPanPan11091,215,489 - 91,463,340 (+)NCBI
Mhudiblu_PPA_v01075,581,900 - 75,829,748 (+)NCBI
RefSeq Acc Id: XM_034930953   ⟹   XP_034786844
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2891,209,993 - 91,458,016 (+)NCBI
NHGRI_mPanPan11091,215,488 - 91,463,340 (+)NCBI
Mhudiblu_PPA_v01075,581,900 - 75,825,981 (+)NCBI
RefSeq Acc Id: XM_034930954   ⟹   XP_034786845
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2891,210,107 - 91,458,016 (+)NCBI
NHGRI_mPanPan11091,215,488 - 91,463,340 (+)NCBI
Mhudiblu_PPA_v01075,581,900 - 75,825,981 (+)NCBI
RefSeq Acc Id: XM_034930955   ⟹   XP_034786846
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2891,209,993 - 91,458,016 (+)NCBI
NHGRI_mPanPan11091,215,349 - 91,463,340 (+)NCBI
Mhudiblu_PPA_v01075,581,794 - 75,829,608 (+)NCBI
RefSeq Acc Id: XM_034930956   ⟹   XP_034786847
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2891,209,993 - 91,458,016 (+)NCBI
NHGRI_mPanPan11091,215,495 - 91,463,340 (+)NCBI
Mhudiblu_PPA_v01075,581,935 - 75,826,117 (+)NCBI
RefSeq Acc Id: XM_034930957   ⟹   XP_034786848
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2891,384,078 - 91,458,016 (+)NCBI
NHGRI_mPanPan11091,389,410 - 91,463,340 (+)NCBI
Mhudiblu_PPA_v01075,755,815 - 75,825,981 (+)NCBI
RefSeq Acc Id: XM_034930958   ⟹   XP_034786849
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2891,384,414 - 91,458,016 (+)NCBI
NHGRI_mPanPan11091,390,264 - 91,463,340 (+)NCBI
Mhudiblu_PPA_v01075,756,672 - 75,825,981 (+)NCBI
RefSeq Acc Id: XM_055093053   ⟹   XP_054949028
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2891,209,993 - 91,458,016 (+)NCBI
NHGRI_mPanPan11091,215,496 - 91,463,340 (+)NCBI
RefSeq Acc Id: XM_063607450   ⟹   XP_063463520
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2891,258,708 - 91,458,016 (+)NCBI
RefSeq Acc Id: XM_063607451   ⟹   XP_063463521
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2891,209,993 - 91,458,016 (+)NCBI
RefSeq Acc Id: XP_034786846   ⟸   XM_034930955
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BIV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034786843   ⟸   XM_034930952
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BIV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034786844   ⟸   XM_034930953
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BIV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034786845   ⟸   XM_034930954
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BIV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034786847   ⟸   XM_034930956
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BIV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034786848   ⟸   XM_034930957
- Peptide Label: isoform X5
- UniProtKB: A0A2R9BIV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034786849   ⟸   XM_034930958
- Peptide Label: isoform X5
- UniProtKB: A0A2R9BIV2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000029582   ⟸   ENSPPAT00000052432
Ensembl Acc Id: ENSPPAP00000029605   ⟸   ENSPPAT00000052455
Ensembl Acc Id: ENSPPAP00000029635   ⟸   ENSPPAT00000052485
RefSeq Acc Id: XP_054949028   ⟸   XM_055093053
- Peptide Label: isoform X4
- UniProtKB: A0A2R9BIV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463521   ⟸   XM_063607451
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BIV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463520   ⟸   XM_063607450
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BIV2 (UniProtKB/TrEMBL)
Protein Domains
SP-RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037801 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052432.1 UniProtKB/TrEMBL
  ENSPPAT00000052455.1 UniProtKB/TrEMBL
  ENSPPAT00000052485.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Zmiz1_N UniProtKB/TrEMBL
  Znf_MIZ UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene ZMIZ1 ENTREZGENE
PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam zf-MIZ UniProtKB/TrEMBL
  Zmiz1_N UniProtKB/TrEMBL
PROSITE ZF_SP_RING UniProtKB/TrEMBL
UniProt A0A2R9BIV2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BIX9_PANPA UniProtKB/TrEMBL
  A0A2R9BME5_PANPA UniProtKB/TrEMBL