TEDDM1 (transmembrane epididymal protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: TEDDM1 (transmembrane epididymal protein 1) Pan paniscus
Analyze
Symbol: TEDDM1
Name: transmembrane epididymal protein 1
RGD ID: 12038458
Description: ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100975943
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2167,330,403 - 67,351,464 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,013,993 - 67,035,020 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,897,568 - 157,917,608 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,549,410 - 161,569,519 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,550,771 - 161,569,394 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
TEDDM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2167,330,403 - 67,351,464 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,013,993 - 67,035,020 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,897,568 - 157,917,608 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,549,410 - 161,569,519 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,550,771 - 161,569,394 (-)Ensemblpanpan1.1panPan2
TEDDM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381182,398,117 - 182,400,667 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1182,398,117 - 182,400,667 (-)EnsemblGRCh38hg38GRCh38
GRCh371182,367,252 - 182,369,802 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361180,633,875 - 180,636,374 (-)NCBINCBI36Build 36hg18NCBI36
Celera1155,478,335 - 155,480,833 (-)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1153,603,556 - 153,606,054 (-)NCBIHuRef
CHM1_11183,790,342 - 183,792,841 (-)NCBICHM1_1
T2T-CHM13v2.01181,757,690 - 181,760,240 (-)NCBIT2T-CHM13v2.0
Teddm1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,750,089 - 153,752,622 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,750,091 - 153,752,617 (+)EnsemblGRCm39 Ensembl
GRCm381153,874,345 - 153,876,871 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,874,345 - 153,876,871 (+)EnsemblGRCm38mm10GRCm38
MGSCv371155,721,475 - 155,724,001 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361155,636,563 - 155,639,089 (+)NCBIMGSCv36mm8
Celera1156,307,471 - 156,309,997 (+)NCBICelera
Cytogenetic Map1G3NCBI
cM Map165.43NCBI
Teddm1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81368,550,629 - 68,552,977 (+)NCBIGRCr8
mRatBN7.21366,000,188 - 66,002,536 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1366,000,281 - 66,001,189 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01371,304,452 - 71,308,203 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1371,305,548 - 71,306,456 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01376,268,967 - 76,269,875 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1365,896,587 - 65,900,338 (+)NCBICelera
Cytogenetic Map13q21NCBI
Teddm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540621,282,941 - 21,285,402 (-)NCBIChiLan1.0ChiLan1.0
LOC100687115
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1715,761,308 - 15,763,087 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha715,345,241 - 15,346,706 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0715,491,833 - 15,493,065 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1715,399,595 - 15,401,060 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0715,508,449 - 15,509,914 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0715,639,794 - 15,641,259 (-)NCBIUU_Cfam_GSD_1.0
TEDDM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9123,770,110 - 123,770,931 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19123,765,986 - 123,773,210 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29135,975,474 - 135,977,598 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Teddm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247712,627,371 - 2,628,271 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247712,627,371 - 2,628,313 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_057301973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000033920   ⟹   ENSPPAP00000011265
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1161,550,771 - 161,569,394 (-)Ensembl
RefSeq Acc Id: XM_057301973   ⟹   XP_057157956
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2167,330,403 - 67,351,464 (+)NCBI
NHGRI_mPanPan1167,013,993 - 67,035,020 (+)NCBI
Protein Sequences
Protein RefSeqs XP_057157956 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000011265.1
Ensembl Acc Id: ENSPPAP00000011265   ⟸   ENSPPAT00000033920
RefSeq Acc Id: XP_057157956   ⟸   XM_057301973
- UniProtKB: A0A2R9A6F1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028837 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033920.1 UniProtKB/TrEMBL
InterPro DUF716 UniProtKB/TrEMBL
NCBI Gene TEDDM1 ENTREZGENE
PANTHER TRANSMEMBRANE EPIDIDYMAL FAMILY MEMBER 3 UniProtKB/TrEMBL
  TRANSMEMBRANE EPIDIDYMAL PROTEIN 1 UniProtKB/TrEMBL
Pfam DUF716 UniProtKB/TrEMBL
UniProt A0A2R9A6F1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-21 TEDDM1  transmembrane epididymal protein 1  LOC100975943  transmembrane epididymal protein 1  Symbol and/or name change 5135510 APPROVED
2023-05-02 LOC100975943  transmembrane epididymal protein 1  TEDDM1  transmembrane epididymal protein 1  Symbol and/or name change 5135510 APPROVED