TEDDM1 (transmembrane epididymal protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TEDDM1 (transmembrane epididymal protein 1) Homo sapiens
Analyze
Symbol: TEDDM1
Name: transmembrane epididymal protein 1
RGD ID: 1606464
HGNC Page HGNC:30233
Description: Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EDDM9; Epdd1; epididymal protein 9; epididymis secretory sperm binding protein Li 45e; HE9; HEL-S-45e; human epididymis-specific protein 9; putative membrane protein HE9; RP1-223H12.2; TMEM45C; transmembrane protein 45C
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: TEDDM2P   TEDDM3P  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381182,398,117 - 182,400,667 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1182,398,117 - 182,400,667 (-)EnsemblGRCh38hg38GRCh38
GRCh371182,367,252 - 182,369,802 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361180,633,875 - 180,636,374 (-)NCBINCBI36Build 36hg18NCBI36
Celera1155,478,335 - 155,480,833 (-)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1153,603,556 - 153,606,054 (-)NCBIHuRef
CHM1_11183,790,342 - 183,792,841 (-)NCBICHM1_1
T2T-CHM13v2.01181,757,690 - 181,760,240 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:29987050  


Genomics

Comparative Map Data
TEDDM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381182,398,117 - 182,400,667 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1182,398,117 - 182,400,667 (-)EnsemblGRCh38hg38GRCh38
GRCh371182,367,252 - 182,369,802 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361180,633,875 - 180,636,374 (-)NCBINCBI36Build 36hg18NCBI36
Celera1155,478,335 - 155,480,833 (-)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1153,603,556 - 153,606,054 (-)NCBIHuRef
CHM1_11183,790,342 - 183,792,841 (-)NCBICHM1_1
T2T-CHM13v2.01181,757,690 - 181,760,240 (-)NCBIT2T-CHM13v2.0
Teddm1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,750,089 - 153,752,622 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,750,091 - 153,752,617 (+)EnsemblGRCm39 Ensembl
GRCm381153,874,345 - 153,876,871 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,874,345 - 153,876,871 (+)EnsemblGRCm38mm10GRCm38
MGSCv371155,721,475 - 155,724,001 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361155,636,563 - 155,639,089 (+)NCBIMGSCv36mm8
Celera1156,307,471 - 156,309,997 (+)NCBICelera
Cytogenetic Map1G3NCBI
cM Map165.43NCBI
Teddm1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81368,550,629 - 68,552,977 (+)NCBIGRCr8
mRatBN7.21366,000,188 - 66,002,536 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1366,000,281 - 66,001,189 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01371,304,452 - 71,308,203 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1371,305,548 - 71,306,456 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01376,268,967 - 76,269,875 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1365,896,587 - 65,900,338 (+)NCBICelera
Cytogenetic Map13q21NCBI
Teddm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540621,282,941 - 21,285,402 (-)NCBIChiLan1.0ChiLan1.0
TEDDM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2167,330,403 - 67,351,464 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,013,993 - 67,035,020 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,897,568 - 157,917,608 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,549,410 - 161,569,519 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,550,771 - 161,569,394 (-)Ensemblpanpan1.1panPan2
LOC100687115
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1715,761,308 - 15,763,087 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha715,345,241 - 15,346,706 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0715,491,833 - 15,493,065 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1715,399,595 - 15,401,060 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0715,508,449 - 15,509,914 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0715,639,794 - 15,641,259 (-)NCBIUU_Cfam_GSD_1.0
TEDDM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9123,770,110 - 123,770,931 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19123,765,986 - 123,773,210 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29135,975,474 - 135,977,598 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Teddm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247712,627,371 - 2,628,271 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247712,627,371 - 2,628,313 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TEDDM1
13 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q25.1-31.1(chr1:175035040-186042595)x1 copy number loss See cases [RCV000051221] Chr1:175035040..186042595 [GRCh38]
Chr1:175004176..186011727 [GRCh37]
Chr1:173270799..184278350 [NCBI36]
Chr1:1q25.1-31.1		 pathogenic
GRCh38/hg38 1q25.2-32.1(chr1:179032905-199724897)x1 copy number loss See cases [RCV000053948] Chr1:179032905..199724897 [GRCh38]
Chr1:179002040..199694025 [GRCh37]
Chr1:177268663..197960648 [NCBI36]
Chr1:1q25.2-32.1		 pathogenic
GRCh38/hg38 1q25.3-31.1(chr1:182137726-186931125)x1 copy number loss See cases [RCV000053949] Chr1:182137726..186931125 [GRCh38]
Chr1:182106861..186900257 [GRCh37]
Chr1:180373484..185166880 [NCBI36]
Chr1:1q25.3-31.1		 pathogenic
NM_172000.3(TEDDM1):c.712G>A (p.Glu238Lys) single nucleotide variant Malignant melanoma [RCV000064367] Chr1:182399774 [GRCh38]
Chr1:182368909 [GRCh37]
Chr1:180635532 [NCBI36]
Chr1:1q25.3		 not provided
GRCh38/hg38 1q25.2-31.3(chr1:176595962-196301688)x1 copy number loss See cases [RCV000134144] Chr1:176595962..196301688 [GRCh38]
Chr1:176565098..196270818 [GRCh37]
Chr1:174831721..194537441 [NCBI36]
Chr1:1q25.2-31.3		 pathogenic
GRCh38/hg38 1q24.3-31.1(chr1:171039975-186875957)x3 copy number gain See cases [RCV000134876] Chr1:171039975..186875957 [GRCh38]
Chr1:171009116..186845089 [GRCh37]
Chr1:169275740..185111712 [NCBI36]
Chr1:1q24.3-31.1		 pathogenic
GRCh38/hg38 1q24.3-31.2(chr1:170929720-191065409)x1 copy number loss See cases [RCV000142369] Chr1:170929720..191065409 [GRCh38]
Chr1:170898861..191034539 [GRCh37]
Chr1:169165485..189301162 [NCBI36]
Chr1:1q24.3-31.2		 pathogenic
GRCh38/hg38 1q24.2-31.1(chr1:170036068-187555148)x1 copy number loss See cases [RCV000143688] Chr1:170036068..187555148 [GRCh38]
Chr1:170005209..187524280 [GRCh37]
Chr1:168271833..185790903 [NCBI36]
Chr1:1q24.2-31.1		 pathogenic
GRCh37/hg19 1q25.3-31.2(chr1:181572003-191524283)x1 copy number loss See cases [RCV000240242] Chr1:181572003..191524283 [GRCh37]
Chr1:1q25.3-31.2		 pathogenic
GRCh37/hg19 1q23.3-25.3(chr1:161676893-184071723)x1 copy number loss See cases [RCV000447098] Chr1:161676893..184071723 [GRCh37]
Chr1:1q23.3-25.3		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179413479-201764737)x1 copy number loss See cases [RCV000445748] Chr1:179413479..201764737 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.2-25.3(chr1:179564752-183850820)x1 copy number loss See cases [RCV000448646] Chr1:179564752..183850820 [GRCh37]
Chr1:1q25.2-25.3		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179073386-200192265)x1 copy number loss See cases [RCV000448809] Chr1:179073386..200192265 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.3(chr1:180830413-183981164)x3 copy number gain See cases [RCV000448160] Chr1:180830413..183981164 [GRCh37]
Chr1:1q25.3		 uncertain significance
GRCh37/hg19 1q24.3-31.3(chr1:171990029-195086758)x1 copy number loss See cases [RCV000448686] Chr1:171990029..195086758 [GRCh37]
Chr1:1q24.3-31.3		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179011314-199022759)x1 copy number loss See cases [RCV000512128] Chr1:179011314..199022759 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1q25.1-25.3(chr1:173138799-185129406)x3 copy number gain See cases [RCV000512520] Chr1:173138799..185129406 [GRCh37]
Chr1:1q25.1-25.3		 likely pathogenic
GRCh37/hg19 1q25.3(chr1:182175044-182472426)x1 copy number loss not provided [RCV000684677] Chr1:182175044..182472426 [GRCh37]
Chr1:1q25.3		 uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1q25.1-31.1(chr1:173131908-187406532)x1 copy number loss not provided [RCV000736735] Chr1:173131908..187406532 [GRCh37]
Chr1:1q25.1-31.1		 pathogenic
NM_172000.4(TEDDM1):c.802C>A (p.Leu268Ile) single nucleotide variant Inborn genetic diseases [RCV003246211] Chr1:182399684 [GRCh38]
Chr1:182368819 [GRCh37]
Chr1:1q25.3		 uncertain significance
GRCh37/hg19 1q25.3(chr1:181863430-183148056)x1 copy number loss not provided [RCV000762696] Chr1:181863430..183148056 [GRCh37]
Chr1:1q25.3		 uncertain significance
NC_000001.10:g.172652343_183538289del10885947 deletion 1q24q25 microdeletion syndrome [RCV000785662] Chr1:172652343..183538289 [GRCh37]
Chr1:1q24.3-25.3		 pathogenic
GRCh37/hg19 1q25.3(chr1:180586428-183178629)x3 copy number gain not provided [RCV001005158] Chr1:180586428..183178629 [GRCh37]
Chr1:1q25.3		 uncertain significance
GRCh37/hg19 1q25.2-32.1(chr1:177551193-199599056)x1 copy number loss not provided [RCV001005157] Chr1:177551193..199599056 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.1-25.3(chr1:173162501-182702252)x3 copy number gain not provided [RCV001258487] Chr1:173162501..182702252 [GRCh37]
Chr1:1q25.1-25.3		 pathogenic
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44		 uncertain significance
GRCh37/hg19 1q25.2-31.1(chr1:178522021-190322133)x1 copy number loss not provided [RCV001836604] Chr1:178522021..190322133 [GRCh37]
Chr1:1q25.2-31.1		 pathogenic
GRCh37/hg19 1q24.3-31.3(chr1:171990029-195086758) copy number loss not specified [RCV002053736] Chr1:171990029..195086758 [GRCh37]
Chr1:1q24.3-31.3		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179413479-201764737) copy number loss not specified [RCV002053780] Chr1:179413479..201764737 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179073386-200192265) copy number loss not specified [RCV002053769] Chr1:179073386..200192265 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.3(chr1:180830413-183981164) copy number gain not specified [RCV002053802] Chr1:180830413..183981164 [GRCh37]
Chr1:1q25.3		 uncertain significance
NC_000001.10:g.(?_179520308)_(183559464_?)dup duplication Granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type 2 [RCV002014062] Chr1:179520308..183559464 [GRCh37]
Chr1:1q25.2-25.3		 uncertain significance
GRCh37/hg19 1q25.2-31.2(chr1:179727182-192260142)x1 copy number loss not provided [RCV002473949] Chr1:179727182..192260142 [GRCh37]
Chr1:1q25.2-31.2		 pathogenic
GRCh37/hg19 1q25.3-32.3(chr1:181453460-213107248)x3 copy number gain not provided [RCV002475637] Chr1:181453460..213107248 [GRCh37]
Chr1:1q25.3-32.3		 pathogenic
NM_172000.4(TEDDM1):c.161T>C (p.Leu54Pro) single nucleotide variant Inborn genetic diseases [RCV002997411] Chr1:182400325 [GRCh38]
Chr1:182369460 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_172000.4(TEDDM1):c.588G>C (p.Met196Ile) single nucleotide variant Inborn genetic diseases [RCV002859285] Chr1:182399898 [GRCh38]
Chr1:182369033 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_172000.4(TEDDM1):c.721T>C (p.Tyr241His) single nucleotide variant Inborn genetic diseases [RCV002865093] Chr1:182399765 [GRCh38]
Chr1:182368900 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_172000.4(TEDDM1):c.683G>T (p.Arg228Ile) single nucleotide variant Inborn genetic diseases [RCV002783617] Chr1:182399803 [GRCh38]
Chr1:182368938 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_172000.4(TEDDM1):c.260T>A (p.Met87Lys) single nucleotide variant Inborn genetic diseases [RCV002955131] Chr1:182400226 [GRCh38]
Chr1:182369361 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_172000.4(TEDDM1):c.667T>C (p.Trp223Arg) single nucleotide variant Inborn genetic diseases [RCV002873484] Chr1:182399819 [GRCh38]
Chr1:182368954 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_172000.4(TEDDM1):c.456C>A (p.Asn152Lys) single nucleotide variant Inborn genetic diseases [RCV002929244] Chr1:182400030 [GRCh38]
Chr1:182369165 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_172000.4(TEDDM1):c.725A>G (p.Tyr242Cys) single nucleotide variant Inborn genetic diseases [RCV002666265] Chr1:182399761 [GRCh38]
Chr1:182368896 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_172000.4(TEDDM1):c.443T>G (p.Leu148Arg) single nucleotide variant Inborn genetic diseases [RCV002879216] Chr1:182400043 [GRCh38]
Chr1:182369178 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_172000.4(TEDDM1):c.607T>C (p.Cys203Arg) single nucleotide variant Inborn genetic diseases [RCV002939715] Chr1:182399879 [GRCh38]
Chr1:182369014 [GRCh37]
Chr1:1q25.3		 uncertain significance
NM_172000.4(TEDDM1):c.409G>T (p.Val137Leu) single nucleotide variant Inborn genetic diseases [RCV003209168] Chr1:182400077 [GRCh38]
Chr1:182369212 [GRCh37]
Chr1:1q25.3		 uncertain significance
GRCh37/hg19 1q25.1-25.3(chr1:173162501-182702252)x3 copy number gain not specified [RCV003986506] Chr1:173162501..182702252 [GRCh37]
Chr1:1q25.1-25.3		 pathogenic
GRCh37/hg19 1q24.2-31.1(chr1:167994071-187711459)x1 copy number loss not specified [RCV003987250] Chr1:167994071..187711459 [GRCh37]
Chr1:1q24.2-31.1		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:695
Count of miRNA genes:507
Interacting mature miRNAs:548
Transcripts:ENST00000367565
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5
Low 6 21 35 3 39 3 34 6 151 14 501 39 1 30
Below cutoff 1716 1935 1201 321 1129 171 3266 1384 2560 238 765 1182 152 849 2168 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000367565   ⟹   ENSP00000356536
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1182,398,117 - 182,400,667 (-)Ensembl
RefSeq Acc Id: NM_172000   ⟹   NP_741997
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381182,398,117 - 182,400,667 (-)NCBI
GRCh371182,367,252 - 182,369,751 (-)RGD
Build 361180,633,875 - 180,636,374 (-)NCBI Archive
Celera1155,478,335 - 155,480,833 (-)RGD
HuRef1153,603,556 - 153,606,054 (-)ENTREZGENE
CHM1_11183,790,342 - 183,792,841 (-)NCBI
T2T-CHM13v2.01181,757,690 - 181,760,240 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_741997 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACV87202 (Get FASTA)   NCBI Sequence Viewer  
  CAD56348 (Get FASTA)   NCBI Sequence Viewer  
  CBH30653 (Get FASTA)   NCBI Sequence Viewer  
  EAW91123 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000356536
  ENSP00000356536.1
GenBank Protein Q5T9Z0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_741997   ⟸   NM_172000
- UniProtKB: Q8IVJ0 (UniProtKB/Swiss-Prot),   Q5T9Z0 (UniProtKB/Swiss-Prot),   A0A0K0K1L0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000356536   ⟸   ENST00000367565

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5T9Z0-F1-model_v2 AlphaFold Q5T9Z0 1-273 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30233 AgrOrtholog
COSMIC TEDDM1 COSMIC
Ensembl Genes ENSG00000203730 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000367565 ENTREZGENE
  ENST00000367565.2 UniProtKB/Swiss-Prot
GTEx ENSG00000203730 GTEx
HGNC ID HGNC:30233 ENTREZGENE
Human Proteome Map TEDDM1 Human Proteome Map
InterPro DUF716 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:127670 UniProtKB/Swiss-Prot
NCBI Gene 127670 ENTREZGENE
OMIM 620288 OMIM
PANTHER TRANSMEMBRANE EPIDIDYMAL FAMILY MEMBER 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSMEMBRANE EPIDIDYMAL PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF716 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142670818 PharmGKB
UniProt A0A0K0K1L0 ENTREZGENE, UniProtKB/TrEMBL
  Q5T9Z0 ENTREZGENE
  Q8IVJ0 ENTREZGENE
  TEDM1_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q8IVJ0 UniProtKB/Swiss-Prot