CCDC71L (coiled-coil domain containing 71 like) - Rat Genome Database

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Gene: CCDC71L (coiled-coil domain containing 71 like) Pan paniscus
Analyze
Symbol: CCDC71L
Name: coiled-coil domain containing 71 like
RGD ID: 12037253
Description: ASSOCIATED WITH breast ductal carcinoma (ortholog); genetic disease (ortholog); invasive ductal carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain containing 71-like; coiled-coil domain-containing protein 71L
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26143,493,816 - 143,503,767 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17191,766,377 - 191,768,175 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0798,630,275 - 98,634,657 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17111,358,148 - 111,362,801 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
CCDC71L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26143,493,816 - 143,503,767 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17191,766,377 - 191,768,175 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0798,630,275 - 98,634,657 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17111,358,148 - 111,362,801 (-)NCBIpanpan1.1PanPan1.1panPan2
CCDC71L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387106,654,360 - 106,661,158 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7106,654,360 - 106,661,158 (-)EnsemblGRCh38hg38GRCh38
GRCh377106,294,806 - 106,301,604 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367106,086,385 - 106,088,827 (-)NCBINCBI36Build 36hg18NCBI36
Celera7101,104,196 - 101,106,638 (-)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7100,656,624 - 100,661,047 (-)NCBIHuRef
CHM1_17106,230,809 - 106,235,232 (-)NCBICHM1_1
T2T-CHM13v2.07107,970,390 - 107,977,188 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27105,658,327 - 105,662,750 (-)NCBI
Ccdc71l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391232,428,788 - 32,432,942 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1232,428,703 - 32,432,942 (+)EnsemblGRCm39 Ensembl
GRCm381232,378,789 - 32,382,943 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1232,378,704 - 32,382,943 (+)EnsemblGRCm38mm10GRCm38
MGSCv371233,063,654 - 33,067,808 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361232,964,893 - 32,965,707 (+)NCBIMGSCv36mm8
Celera1233,836,848 - 33,841,002 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1213.74NCBI
Ccdc71l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8654,687,474 - 54,691,566 (+)NCBIGRCr8
mRatBN7.2648,960,020 - 48,964,112 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,960,883 - 48,964,139 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl648,960,191 - 48,960,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx649,270,002 - 49,274,093 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0649,584,925 - 49,589,016 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0649,024,242 - 49,028,331 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0651,659,498 - 51,666,145 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl651,662,224 - 51,662,874 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0661,296,309 - 61,303,160 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4650,622,965 - 50,623,768 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera648,160,311 - 48,164,031 (+)NCBICelera
Cytogenetic Map6q16NCBI
Ccdc71l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543421,505,839 - 21,509,427 (-)NCBIChiLan1.0ChiLan1.0
CCDC71L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11813,757,821 - 13,760,022 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1813,408,194 - 13,409,106 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01814,033,125 - 14,034,025 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1814,033,125 - 14,033,865 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11813,845,117 - 13,846,012 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01813,766,377 - 13,767,256 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01814,046,791 - 14,047,703 (+)NCBIUU_Cfam_GSD_1.0
Ccdc71l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244057623,101 - 5,927 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049398503,547 - 4,283 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049398503,101 - 4,265 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC71L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9106,544,340 - 106,545,053 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19106,540,924 - 106,545,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29117,341,913 - 117,343,126 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103226708
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12175,574,563 - 75,578,994 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2175,578,001 - 75,578,708 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604228,293,789 - 28,298,220 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc71l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473923,004,047 - 23,012,672 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473923,003,969 - 23,013,467 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063606329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_063606329   ⟹   XP_063462399
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26143,493,816 - 143,503,767 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063462399 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_063462399   ⟸   XM_063606329


Additional Information

Database Acc Id Source(s)
NCBI Gene CCDC71L ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-28 CCDC71L  coiled-coil domain containing 71 like    coiled-coil domain containing 71-like  Symbol and/or name change 5135510 APPROVED