MARCHF4 (membrane associated ring-CH-type finger 4) - Rat Genome Database

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Gene: MARCHF4 (membrane associated ring-CH-type finger 4) Pan paniscus
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Symbol: MARCHF4
Name: membrane associated ring-CH-type finger 4
RGD ID: 12034510
Description: ENCODES a protein that exhibits ubiquitin-protein transferase activity (inferred); zinc ion binding (inferred); INVOLVED IN protein ubiquitination (inferred); ASSOCIATED WITH frontotemporal dementia (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN endomembrane system (inferred); Golgi stack (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase MARCH4; E3 ubiquitin-protein ligase MARCHF4; MARCH4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213118,884,516 - 118,998,758 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B118,899,480 - 119,013,727 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B103,517,175 - 103,632,197 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B222,121,032 - 222,235,291 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B222,121,032 - 222,235,548 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARCHF4Bonobofrontotemporal dementia  ISOMARCHF4 (Homo sapiens)8554872ClinVar Annotator: match by term: Frontotemporal dementiaClinVarPMID:29476165
MARCHF4BonoboNeurodevelopmental Disorders  ISOMARCHF4 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARCHF4Bonoboprotein ubiquitination involved_inIEAUniPathway:UPA00143150520179 UniProtGO_REF:0000041
MARCHF4Bonoboprotein ubiquitination involved_inIEAInterPro:IPR046356150520179 InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARCHF4Bonoboendomembrane system located_inIEAUniProtKB-SubCell:SL-0147150520179 UniProtGO_REF:0000044
MARCHF4BonoboGolgi stack located_inIEAPANTHER:PTN002917709150520179 TreeGrafterGO_REF:0000118
MARCHF4BonoboGolgi stack located_inIEAUniProtKB:Q9P2E8 and ensembl:ENSP00000273067150520179 EnsemblGO_REF:0000107
MARCHF4Bonobomembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
MARCHF4Bonobotrans-Golgi network located_inIEAPANTHER:PTN002917709150520179 TreeGrafterGO_REF:0000118
MARCHF4Bonobotrans-Golgi network located_inIEAUniProtKB:Q9P2E8 and ensembl:ENSP00000273067150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MARCHF4Bonoboubiquitin-protein transferase activity enablesIEAPANTHER:PTN002917709150520179 TreeGrafterGO_REF:0000118
MARCHF4Bonoboubiquitin-protein transferase activity enablesIEAInterPro:IPR046356150520179 InterProGO_REF:0000002
MARCHF4Bonoboubiquitin-protein transferase activity enablesIEAUniProtKB:Q9P2E8 and ensembl:ENSP00000273067150520179 EnsemblGO_REF:0000107
MARCHF4Bonobozinc ion binding enablesIEAInterPro:IPR011016150520179 InterProGO_REF:0000002

PMID:22301074   PMID:30032202  



MARCHF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213118,884,516 - 118,998,758 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B118,899,480 - 119,013,727 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B103,517,175 - 103,632,197 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B222,121,032 - 222,235,291 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B222,121,032 - 222,235,548 (-)Ensemblpanpan1.1panPan2
MARCHF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382216,257,865 - 216,372,483 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2216,257,865 - 216,372,483 (-)EnsemblGRCh38hg38GRCh38
GRCh372217,122,588 - 217,237,206 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362216,830,834 - 216,944,995 (-)NCBINCBI36Build 36hg18NCBI36
Build 342216,948,094 - 217,062,256NCBI
Celera2210,889,243 - 211,003,395 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2208,976,394 - 209,090,552 (-)NCBIHuRef
CHM1_12217,128,106 - 217,242,266 (-)NCBICHM1_1
T2T-CHM13v2.02216,740,406 - 216,854,601 (-)NCBIT2T-CHM13v2.0
Marchf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39172,466,271 - 72,576,454 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl172,466,271 - 72,576,089 (-)EnsemblGRCm39 Ensembl
GRCm38172,427,112 - 72,537,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl172,427,112 - 72,536,930 (-)EnsemblGRCm38mm10GRCm38
MGSCv37172,473,686 - 72,583,138 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36172,360,322 - 72,470,499 (-)NCBIMGSCv36mm8
Celera172,999,270 - 73,104,429 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map136.54NCBI
Marchf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8981,527,703 - 81,647,448 (-)NCBIGRCr8
mRatBN7.2974,078,437 - 74,196,070 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl974,078,434 - 74,198,199 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0979,781,752 - 79,898,726 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl979,782,845 - 79,898,912 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0979,554,293 - 79,670,966 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4971,617,505 - 71,735,985 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera971,473,921 - 71,591,034 (-)NCBICelera
Cytogenetic Map9q33NCBI
Marchf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545316,820,344 - 16,933,152 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545316,820,344 - 16,933,106 (+)NCBIChiLan1.0ChiLan1.0
MARCHF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13723,218,664 - 23,330,115 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3723,220,458 - 23,330,077 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3724,047,570 - 24,161,054 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03723,245,433 - 23,359,713 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3723,245,431 - 23,357,446 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13723,130,632 - 23,244,121 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03723,083,496 - 23,196,876 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03723,101,072 - 23,215,243 (-)NCBIUU_Cfam_GSD_1.0
Marchf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303171,599,517 - 171,701,771 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936586925,192 - 1,029,578 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936586923,254 - 1,026,340 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MARCHF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15118,480,239 - 118,587,549 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115118,480,243 - 118,587,548 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215131,361,322 - 131,466,904 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MARCHF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110102,099,296 - 102,213,263 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10102,099,150 - 102,211,499 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604097,188,351 - 97,300,419 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Marchf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248238,748,490 - 8,864,330 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248238,748,487 - 8,864,304 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_003818586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000048114   ⟹   ENSPPAP00000025287
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B222,121,032 - 222,235,548 (-)Ensembl
RefSeq Acc Id: XM_003818586   ⟹   XP_003818634
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213118,884,516 - 118,998,758 (-)NCBI
NHGRI_mPanPan12B118,899,480 - 119,013,727 (-)NCBI
Mhudiblu_PPA_v02B103,517,175 - 103,632,197 (-)NCBI
PanPan1.12B222,121,032 - 222,235,291 (-)NCBI
Sequence:
Protein RefSeqs XP_003818634 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000025287.1
RefSeq Acc Id: XP_003818634   ⟸   XM_003818586
- UniProtKB: A0A2R9B6S4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000025287   ⟸   ENSPPAT00000048114
RING-CH-type



1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSPPAG00000035784 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048114.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro MARCHF4/9/11 UniProtKB/TrEMBL
  MARCHF4_RING_CH-C4HC3 UniProtKB/TrEMBL
  Znf_RING-CH UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report pps:100971233 UniProtKB/TrEMBL
NCBI Gene MARCH4 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCHF4 UniProtKB/TrEMBL
  PTHR46053 UniProtKB/TrEMBL
Pfam RINGv UniProtKB/TrEMBL
PROSITE ZF_RING_CH UniProtKB/TrEMBL
SMART RINGv UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A2R9B6S4 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-16 MARCHF4  membrane associated ring-CH-type finger 4  MARCH4  membrane associated ring-CH-type finger 4  Symbol and/or name change 5135510 APPROVED