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Gene: SS18 (SS18 subunit of BAF chromatin remodeling complex) Pan paniscus

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Symbol:

SS18

Name:

SS18 subunit of BAF chromatin remodeling complex

RGD ID:

12030912

Description:

ENCODES a protein that exhibits transcription coactivator activity (inferred); INVOLVED IN cell morphogenesis (ortholog); cytoskeleton organization (ortholog); ephrin receptor signaling pathway (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); synovial sarcoma (ortholog); FOUND IN microtubule cytoskeleton (inferred); npBAF complex (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SS18, nBAF chromatin remodeling complex subunit

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	43,446,715 - 43,521,783 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	29,139,311 - 29,214,224 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	19,274,395 - 19,349,311 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	22,883,522 - 22,958,308 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	22,883,522 - 22,957,996 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 18q deletion syndrome (ISO)

intellectual disability (ISO)

synovial sarcoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell morphogenesis (IEA,ISO)

cytoskeleton organization (IEA,ISO)

ephrin receptor signaling pathway (IEA,ISO)

intracellular signal transduction (IEA,ISO)

microtubule cytoskeleton organization (IEA,ISO)

neuronal stem cell population maintenance (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA)

response to xenobiotic stimulus (IEA,ISO)

Cellular Component

microtubule cytoskeleton (IEA)

npBAF complex (IEA)

nucleoplasm (IEA)

nucleus (IEA)

SWI/SNF complex (IEA)

Molecular Function

protein binding (ISO)

transcription coactivator activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SS18
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	43,446,715 - 43,521,783 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	29,139,311 - 29,214,224 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	19,274,395 - 19,349,311 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	22,883,522 - 22,958,308 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	22,883,522 - 22,957,996 (-)	Ensembl	panpan1.1		panPan2

SS18
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	26,016,253 - 26,091,219 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	26,016,253 - 26,091,217 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	23,596,217 - 23,671,183 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	21,850,215 - 21,924,609 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	21,850,216 - 21,924,609	NCBI
Celera	18	20,410,686 - 20,485,111 (-)	NCBI		Celera
Cytogenetic Map	18	q11.2	NCBI
HuRef	18	20,453,679 - 20,528,047 (-)	NCBI		HuRef
CHM1_1	18	23,523,494 - 23,597,904 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	26,210,888 - 26,285,993 (-)	NCBI		T2T-CHM13v2.0

Ss18
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	14,758,686 - 14,817,476 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	14,757,255 - 14,815,971 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	14,625,629 - 14,684,419 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	14,624,198 - 14,682,914 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	14,784,138 - 14,841,423 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	14,768,647 - 14,825,932 (-)	NCBI		MGSCv36	mm8
Celera	18	14,853,257 - 14,910,817 (-)	NCBI		Celera
Cytogenetic Map	18	A1	NCBI
cM Map	18	8.14	NCBI

Ss18
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	6,047,619 - 6,169,151 (-)	NCBI		GRCr8
mRatBN7.2	18	5,773,042 - 5,835,696 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	5,773,042 - 5,835,333 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	5,994,995 - 6,057,418 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	6,782,610 - 6,845,031 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	6,049,308 - 6,111,354 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	6,020,267 - 6,083,055 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	6,020,267 - 6,083,033 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	5,987,818 - 6,050,291 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	5,870,874 - 5,934,171 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	5,870,873 - 5,947,864 (-)	NCBI
Celera	18	5,806,184 - 5,868,385 (-)	NCBI		Celera
Cytogenetic Map	18	p13	NCBI

Ss18
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	14,140,261 - 14,210,467 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	14,140,261 - 14,210,467 (-)	NCBI	ChiLan1.0	ChiLan1.0

SS18
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	62,490,901 - 62,571,607 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	62,475,290 - 62,570,234 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	61,924,505 - 62,005,264 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	62,540,509 - 62,621,336 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	62,525,187 - 62,621,339 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	62,212,288 - 62,292,973 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	62,225,483 - 62,306,491 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	62,528,538 - 62,609,282 (+)	NCBI		UU_Cfam_GSD_1.0

Ss18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	58,531,583 - 58,616,139 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936550	5,211,049 - 5,284,433 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936550	5,199,298 - 5,284,505 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SS18
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	110,710,569 - 110,790,379 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	110,711,438 - 110,789,805 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	103,673,476 - 103,752,025 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SS18
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	54,477,339 - 54,548,920 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	54,477,959 - 54,546,814 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	29,213,194 - 29,285,029 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ss18
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624770	6,256,120 - 6,339,257 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624770	6,256,397 - 6,338,047 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003830274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003830275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003830276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034943390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055102750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000051897 ⟹ ENSPPAP00000029049

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	18	22,883,522 - 22,957,996 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000051904 ⟹ ENSPPAP00000029056

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	18	22,884,608 - 22,957,996 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000051915 ⟹ ENSPPAP00000029067

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	18	22,946,222 - 22,957,663 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000051916 ⟹ ENSPPAP00000029068

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	18	22,947,471 - 22,957,663 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000051918 ⟹ ENSPPAP00000029070

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	18	22,949,570 - 22,957,663 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000051919 ⟹ ENSPPAP00000029071

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	18	22,951,210 - 22,957,663 (-)	Ensembl

RefSeq Acc Id:

XM_003830274 ⟹ XP_003830322

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	17	43,446,715 - 43,521,219 (-)	NCBI
NHGRI_mPanPan1	18	29,139,311 - 29,213,688 (-)	NCBI
Mhudiblu_PPA_v0	18	19,275,476 - 19,348,791 (-)	NCBI
PanPan1.1	18	22,883,522 - 22,957,751 (-)	NCBI

Sequence:

show sequence

GGTTCAGCCCGAGAGGCCGGCGTCTCTCCCCCAGTTTGCCGTTCACCCGGAGCGCCCGGGACTT
GCCGATAGTGGTGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAGGCAAGG
GGGAGATCACTCCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTAT
AATGGACTCTCAGAATAAAGGAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACA
AACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAAAATATGCAGTCTCTTTTACCAGCAC
CACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCC
ACGCTCTCACAACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAG
AACCAGATGAACGGCCAGATGCCTGGGCCTAACCATATGCCTATGCAGGGACCTGGACCCAATC
AACTCAATATGACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGAGGTTA
CAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGA
CAACCAATGGGAAACTATGGTCCCAGACCAAATATGAATATGCAGCCAAACCAAGGTCCAATGA
TGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCACAGGGAGGCGGACAGCATTACCAAGG
ACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGA
CAGATTCCTCCCTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACT
ATTACGGGGACCAATACAGTCATGGTGGACAAGGTCCTCCAGAAGGCATGAACCAGCAATATTA
CCCTGATGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCACAACAG
GGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCT
ACGGTCCTTCACAGGGTGGTCCAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCA
GTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCCCAGCAGAGGCCTTATGGA
TATGACCAGGGACAGTATGGAAATTACCAGCAGTGAAAAAGTACTTACATTCCAGTAGCCAGTA
TCTATTAGCAGCCATATTGTCACCTCAGCACTGTGGACACCTCCCTGTGAAGAGATCCTTCCAT
TCCATCTAGTTTTTGGAAAAACCTTGTGGATAAGTGGCTGTTTCATCAGTAAGCAGCCTTTGTG
GTTTAGTTATAAAAGGCTTTAGTAGCTCAAAAATACTCTTGATTTCACATTTCTACTCTAGATG
GCAACATTGGACAGAAAATGCAATGACATAACCAATTCGTAATGATTTTGGAACTGTGTTTCAA
ATGGACTGTTACAGACTGAAAGGTGTGAACAGCTTTGTATGTTTATGAAGGGTAAGGGAATTTA
ATACTTTTCCACAGATTTTTTTGTAAGGGGAAGAGGGAAATGTACACTTTTTACAGCAGCAATA
TTTTGTATATTATGTTTATTTCATGTGAATATGCAAGGCGGTACACTACGCACTGGACAGCATC
AGAAATCCTCTGTTAATGTGGACTGGAGCATGGTAGATGCTTGATTGTTTTGGTCTCAAAATGG
TGTGCTATAAAGATAAAGGTGAGGGGAAGACAAAGCACACCATATGTCCACTGTTCTGTTCTCA
TAGAGGAAATTCAAATCCCTTTTATCTATTAGATAATCAAGGGCACTGTGATACAGTTTTGAGT
AAAAAGACATTTTTTAAAAGCCTTCCAGTTTTGTGGATTAAACCTTTTTATAAAGATCATTTAT
AATACTGTTTTAAAATGTGAGGCAATAAGAATTACTTTGTGTTGGATCTGAGGAGGCTTTGGTA
AAACAGTTTCATCTAAATGAAAGTGGTAATCCTCTTCTAAAATAGCAATAACTGAAAATGAAAG
TGTTAATTTTACCTTGTTTGAGTTATCAGGGAACTTAGTAAGTAATATCAAAGCATTTTATAAA
TGATATCAAAGAAGAGTCAACATTGATCCAGTCATTTTATTTTGTAACATTGAGGGATAATTGG
TTATTAAACTGAATAGTTCAGGAGACTTGACAAACCTTTGTTTCAACTTTCTTATCTGGAAATA
ATATCATTTATAAAGGGACACTTTTATGTTTTTCCCTTTTTTATGTTGGTTAATATAACACAAA
GAGATATTTAGGAAAATGCTTATTGATGAGGTTTATTCTATCTGTTTTTAAAGCACAGAGGTTG
CATTCTAGATAACCTTGTTTATTAGCATGGCATATTTTAATCATTATTTGAGACTGTCCTGTGC
CTGATTATTTTAGCTAAATTCAGGGAGATTGCGTGGGGCAGGAAAGCATGCATTGAAAAATTTC
TAACCACGGTTATTTAAGCATAATCTGAAAACATCTAGCCCAAAGGTAAGTTGCTATTTTCATC
ACAGTTGCCTATGCCCAGGGAATAAGATGTATTCTTTATAATTGAATTGGTTTTTCCCACGTCT
AACTGGAAACAAAACAGAAGGGGCGTCATAAATTTGAATAAGCAGAACATACTGTTCTCAACAT
ACTGTAATCAAAAGGAGGAATTTCAGTGGGTCTCTGTGTGTGTATGAGAGAGAGAGTGTGTGTT
TGTGTGTTTCAAGGTCAGAACAGGTTTTTTTGTTTTTGTTTTTTGTTCTTTGTTTTTTTTTTTT
GAGATGGAGTCTTGCTCTTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTGCAA
CCTCCGCCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTACTGAGTAGCTGGGATGACAGGC
ACCCGCCACCACACCCAGCTAATTTTTGTACTTTTAGTAGAGACGAGGTTTCGCCATGTTGGCC
AGGCTGATCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTTCCAAAGTGCTGGGAT
TACAGGCGTGAGCCACCGTGCCTGGCCAGAATAGGTTTTTTCTTTCAACTTGATCAGTAGAAAA
TGGACATCAAGTTTGAACAGATAAATCATGGACAGCCTTATTGTGATTGAAATGCTTGTAGGTT
CTGTGCCAATTTTCCACCACTGTGTACTTTGTTGCTATTTAAAACTGTATCAACTCTAACGGAA
GAATAAATTATTTGTGATTTTAA

hide sequence

RefSeq Acc Id:

XM_003830275 ⟹ XP_003830323

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	17	43,446,715 - 43,521,220 (-)	NCBI
NHGRI_mPanPan1	18	29,139,311 - 29,213,771 (-)	NCBI
Mhudiblu_PPA_v0	18	19,274,395 - 19,348,794 (-)	NCBI
PanPan1.1	18	22,883,522 - 22,957,996 (-)	NCBI

Sequence:

show sequence

TTTCCTGAATCGCTGAAGCGGAGGGAGGACTAGGGCGCGACTCTACCATTAGCGCAAAGGGCCA
GGGGGTGCCCATAAGGAGAGCTCGGGGGATGCGAGGACGGTCAAGAAAGTTCGGCCAGGGCTAG
GGGTCCCCCAGAGTGCGCAGAAGCGAGACATCCCTGGGCCAGAGTGCCTCCTTCAGGCCTGCCC
CGCCGCCCGTCCGCTTGGCCCCGGAGCATCCCCCCTCCCCGCATTCCCGAGGTGGTTCAGCCCG
AGAGGCCGGCGTCTCTCCCCCAGTTTGCCGTTCACCCGGAGCGCCCGGGACTTGCCGATAGTGG
TGACGGCGGCAACATGTCTGTGGCTTTCGCGGCCCCGAGGCAGCGAGGCAAGGGGGAGATCACT
CCCGCTGCGATTCAGAAGATGTTGGATGACAATAACCATCTTATTCAGTGTATAATGGACTCTC
AGAATAAAGGAAAGACCTCAGAGTGTTCTCAGTATCAGCAGATGTTGCACACAAACTTGGTATA
CCTTGCTACAATAGCAGATTCTAATCAAAATATGCAGTCTCTTTTACCAGCACCACCCACACAG
AATATGCCTATGGGTCCTGGAGGGATGAATCAGAGCGGCCCTCCCCCACCTCCACGCTCTCACA
ACATGCCTTCAGATGGAATGGTAGGTGGGGGTCCTCCTGCACCGCACATGCAGAACCAGATGAA
CGGCCAGATGCCTGGGCCTAACCATATGCCTATGCAGGGACCTGGACCCAATCAACTCAATATG
ACAAACAGTTCCATGAATATGCCTTCAAGTAGCCATGGATCCATGGGAGGTTACAACCATTCTG
TGCCATCATCACAGAGCATGCCAGTACAGAATCAGATGACAATGAGTCAGGGACAACCAATGGG
AAACTATGGTCCCAGACCAAATATGAATATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAG
CCTCCTTCTCAGCAATACAATATGCCACAGGGAGGCGGACAGCATTACCAAGGACAGCAGCCAC
CTATGGGAATGATGGGTCAAGTTAACCAAGGCAATCATATGATGGGTCAGAGACAGATTCCTCC
CTATAGACCTCCTCAACAGGGCCCACCACAGCAGTACTCAGGCCAGGAAGACTATTACGGGGAC
CAATACAGTCATGGTGGACAAGGTCCTCCAGAAGGCATGAACCAGCAATATTACCCTGATGGTC
ATAATGATTACGGTTATCAGCAACCGTCGTATCCTGAACAAGGCTACGATAGGCCTTATGAGGA
TTCCTCACAACATTACTACGAAGGAGGAAATTCACAGTATGGCCAACAGCAAGATGCATACCAG
GGACCACCTCCACAACAGGGATATCCACCCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACC
CAGGACAGCAGCAGGGCTACGGTCCTTCACAGGGTGGTCCAGGTCCTCAGTATCCTAACTACCC
ACAGGGACAAGGTCAGCAGTATGGAGGATATAGACCAACACAGCCTGGACCACCACAGCCACCC
CAGCAGAGGCCTTATGGATATGACCAGGGACAGTATGGAAATTACCAGCAGTGAAAAAGTACTT
ACATTCCAGTAGCCAGTATCTATTAGCAGCCATATTGTCACCTCAGCACTGTGGACACCTCCCT
GTGAAGAGATCCTTCCATTCCATCTAGTTTTTGGAAAAACCTTGTGGATAAGTGGCTGTTTCAT
CAGTAAGCAGCCTTTGTGGTTTAGTTATAAAAGGCTTTAGTAGCTCAAAAATACTCTTGATTTC
ACATTTCTACTCTAGATGGCAACATTGGACAGAAAATGCAATGACATAACCAATTCGTAATGAT
TTTGGAACTGTGTTTCAAATGGACTGTTACAGACTGAAAGGTGTGAACAGCTTTGTATGTTTAT
GAAGGGTAAGGGAATTTAATACTTTTCCACAGATTTTTTTGTAAGGGGAAGAGGGAAATGTACA
CTTTTTACAGCAGCAATATTTTGTATATTATGTTTATTTCATGTGAATATGCAAGGCGGTACAC
TACGCACTGGACAGCATCAGAAATCCTCTGTTAATGTGGACTGGAGCATGGTAGATGCTTGATT
GTTTTGGTCTCAAAATGGTGTGCTATAAAGATAAAGGTGAGGGGAAGACAAAGCACACCATATG
TCCACTGTTCTGTTCTCATAGAGGAAATTCAAATCCCTTTTATCTATTAGATAATCAAGGGCAC
TGTGATACAGTTTTGAGTAAAAAGACATTTTTTAAAAGCCTTCCAGTTTTGTGGATTAAACCTT
TTTATAAAGATCATTTATAATACTGTTTTAAAATGTGAGGCAATAAGAATTACTTTGTGTTGGA
TCTGAGGAGGCTTTGGTAAAACAGTTTCATCTAAATGAAAGTGGTAATCCTCTTCTAAAATAGC
AATAACTGAAAATGAAAGTGTTAATTTTACCTTGTTTGAGTTATCAGGGAACTTAGTAAGTAAT
ATCAAAGCATTTTATAAATGATATCAAAGAAGAGTCAACATTGATCCAGTCATTTTATTTTGTA
ACATTGAGGGATAATTGGTTATTAAACTGAATAGTTCAGGAGACTTGACAAACCTTTGTTTCAA
CTTTCTTATCTGGAAATAATATCATTTATAAAGGGACACTTTTATGTTTTTCCCTTTTTTATGT
TGGTTAATATAACACAAAGAGATATTTAGGAAAATGCTTATTGATGAGGTTTATTCTATCTGTT
TTTAAAGCACAGAGGTTGCATTCTAGATAACCTTGTTTATTAGCATGGCATATTTTAATCATTA
TTTGAGACTGTCCTGTGCCTGATTATTTTAGCTAAATTCAGGGAGATTGCGTGGGGCAGGAAAG
CATGCATTGAAAAATTTCTAACCACGGTTATTTAAGCATAATCTGAAAACATCTAGCCCAAAGG
TAAGTTGCTATTTTCATCACAGTTGCCTATGCCCAGGGAATAAGATGTATTCTTTATAATTGAA
TTGGTTTTTCCCACGTCTAACTGGAAACAAAACAGAAGGGGCGTCATAAATTTGAATAAGCAGA
ACATACTGTTCTCAACATACTGTAATCAAAAGGAGGAATTTCAGTGGGTCTCTGTGTGTGTATG
AGAGAGAGAGTGTGTGTTTGTGTGTTTCAAGGTCAGAACAGGTTTTTTTGTTTTTGTTTTTTGT
TCTTTGTTTTTTTTTTTTGAGATGGAGTCTTGCTCTTGTCGCCCAGGCTGGAGTGCAGTGGCGC
AATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTACTGA
GTAGCTGGGATGACAGGCACCCGCCACCACACCCAGCTAATTTTTGTACTTTTAGTAGAGACGA
GGTTTCGCCATGTTGGCCAGGCTGATCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGC
CTTCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCAGAATAGGTTTTTTCTTTC
AACTTGATCAGTAGAAAATGGACATCAAGTTTGAACAGATAAATCATGGACAGCCTTATTGTGA
TTGAAATGCTTGTAGGTTCTGTGCCAATTTTCCACCACTGTGTACTTTGTTGCTATTTAAAACT
GTATCAACTCTAACGGAAGAATAAATTATTTGTGATTTTAA

hide sequence

RefSeq Acc Id:

XM_003830276 ⟹ XP_003830324

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	17	43,446,715 - 43,521,783 (-)	NCBI
NHGRI_mPanPan1	18	29,139,311 - 29,214,224 (-)	NCBI
Mhudiblu_PPA_v0	18	19,274,395 - 19,349,311 (-)	NCBI
PanPan1.1	18	22,884,608 - 22,958,308 (-)	NCBI

Sequence:

show sequence

CACCTCTGCCCTATCTCGGCAGATGCTCCACGGATTTGCACGAACTCCCGAGTCTTGACCTTCC
TCCCCTCTCCGGGCTGCCGGGACAACTCGGGGCGGCCACTTCTTGCCAGGAGGCATGTTGGATG
ACAATAACCATCTTATTCAGTGTATAATGGACTCTCAGAATAAAGGAAAGACCTCAGAGTGTTC
TCAGTATCAGCAGATGTTGCACACAAACTTGGTATACCTTGCTACAATAGCAGATTCTAATCAA
AATATGCAGTCTCTTTTACCAGCACCACCCACACAGAATATGCCTATGGGTCCTGGAGGGATGA
ATCAGAGCGGCCCTCCCCCACCTCCACGCTCTCACAACATGCCTTCAGATGGAATGGTAGGTGG
GGGTCCTCCTGCACCGCACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAACCATATG
CCTATGCAGGGACCTGGACCCAATCAACTCAATATGACAAACAGTTCCATGAATATGCCTTCAA
GTAGCCATGGATCCATGGGAGGTTACAACCATTCTGTGCCATCATCACAGAGCATGCCAGTACA
GAATCAGATGACAATGAGTCAGGGACAACCAATGGGAAACTATGGTCCCAGACCAAATATGAAT
ATGCAGCCAAACCAAGGTCCAATGATGCATCAGCAGCCTCCTTCTCAGCAATACAATATGCCAC
AGGGAGGCGGACAGCATTACCAAGGACAGCAGCCACCTATGGGAATGATGGGTCAAGTTAACCA
AGGCAATCATATGATGGGTCAGAGACAGATTCCTCCCTATAGACCTCCTCAACAGGGCCCACCA
CAGCAGTACTCAGGCCAGGAAGACTATTACGGGGACCAATACAGTCATGGTGGACAAGGTCCTC
CAGAAGGCATGAACCAGCAATATTACCCTGATGGTCATAATGATTACGGTTATCAGCAACCGTC
GTATCCTGAACAAGGCTACGATAGGCCTTATGAGGATTCCTCACAACATTACTACGAAGGAGGA
AATTCACAGTATGGCCAACAGCAAGATGCATACCAGGGACCACCTCCACAACAGGGATATCCAC
CCCAGCAGCAGCAGTACCCAGGGCAGCAAGGTTACCCAGGACAGCAGCAGGGCTACGGTCCTTC
ACAGGGTGGTCCAGGTCCTCAGTATCCTAACTACCCACAGGGACAAGGTCAGCAGTATGGAGGA
TATAGACCAACACAGCCTGGACCACCACAGCCACCCCAGCAGAGGCCTTATGGATATGACCAGG
GACAGTATGGAAATTACCAGCAGTGAAAAAGTACTTACATTCCAGTAGCCAGTATCTATTAGCA
GCCATATTGTCACCTCAGCACTGTGGACACCTCCCTGTGAAGAGATCCTTCCATTCCATCTAGT
TTTTGGAAAAACCTTGTGGATAAGTGGCTGTTTCATCAGTAAGCAGCCTTTGTGGTTTAGTTAT
AAAAGGCTTTAGTAGCTCAAAAATACTCTTGATTTCACATTTCTACTCTAGATGGCAACATTGG
ACAGAAAATGCAATGACATAACCAATTCGTAATGATTTTGGAACTGTGTTTCAAATGGACTGTT
ACAGACTGAAAGGTGTGAACAGCTTTGTATGTTTATGAAGGGTAAGGGAATTTAATACTTTTCC
ACAGATTTTTTTGTAAGGGGAAGAGGGAAATGTACACTTTTTACAGCAGCAATATTTTGTATAT
TATGTTTATTTCATGTGAATATGCAAGGCGGTACACTACGCACTGGACAGCATCAGAAATCCTC
TGTTAATGTGGACTGGAGCATGGTAGATGCTTGATTGTTTTGGTCTCAAAATGGTGTGCTATAA
AGATAAAGGTGAGGGGAAGACAAAGCACACCATATGTCCACTGTTCTGTTCTCATAGAGGAAAT
TCAAATCCCTTTTATCTATTAGATAATCAAGGGCACTGTGATACAGTTTTGAGTAAAAAGACAT
TTTTTAAAAGCCTTCCAGTTTTGTGGATTAAACCTTTTTATAAAGATCATTTATAATACTGTTT
TAAAATGTGAGGCAATAAGAATTACTTTGTGTTGGATCTGAGGAGGCTTTGGTAAAACAGTTTC
ATCTAAATGAAAGTGGTAATCCTCTTCTAAAATAGCAATAACTGAAAATGAAAGTGTTAATTTT
ACCTTGTTTGAGTTATCAGGGAACTTAGTAAGTAATATCAAAGCATTTTATAAATGATATCAAA
GAAGAGTCAACATTGATCCAGTCATTTTATTTTGTAACATTGAGGGATAATTGGTTATTAAACT
GAATAGTTCAGGAGA

hide sequence

RefSeq Acc Id:

XM_055102750 ⟹ XP_054958725

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	17	43,446,715 - 43,517,869 (-)	NCBI
NHGRI_mPanPan1	18	29,139,311 - 29,210,423 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003830322	(Get FASTA)	NCBI Sequence Viewer
	XP_003830323	(Get FASTA)	NCBI Sequence Viewer
	XP_003830324	(Get FASTA)	NCBI Sequence Viewer
	XP_054958725	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000029049.1
	ENSPPAP00000029056.1
	ENSPPAP00000029067.1
	ENSPPAP00000029068.1
	ENSPPAP00000029070.1
	ENSPPAP00000029071.1

RefSeq Acc Id:	XP_003830323 ⟸ XM_003830275
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BHB4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATI ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMP GPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGP RPNMNMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPP QQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQH YYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQG QQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ hide sequence

RefSeq Acc Id:

XP_003830324 ⟸ XM_003830276

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGP
GGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMN
MPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQY
NMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGG
QGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQ
GYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYG
YDQGQYGNYQQ

hide sequence

RefSeq Acc Id:	XP_003830322 ⟸ XM_003830274
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9BR14 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATI ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMP GPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGP RPNMNMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPP QQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQ YPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGN YQQ hide sequence

Ensembl Acc Id:

ENSPPAP00000029049 ⟸ ENSPPAT00000051897

Ensembl Acc Id:

ENSPPAP00000029056 ⟸ ENSPPAT00000051904

Ensembl Acc Id:

ENSPPAP00000029070 ⟸ ENSPPAT00000051918

Ensembl Acc Id:

ENSPPAP00000029068 ⟸ ENSPPAT00000051916

Ensembl Acc Id:

ENSPPAP00000029067 ⟸ ENSPPAT00000051915

Ensembl Acc Id:

ENSPPAP00000029071 ⟸ ENSPPAT00000051919

RefSeq Acc Id:	XP_054958725 ⟸ XM_055102750
- Peptide Label:	isoform X4

Protein Domains

SS18 N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000037543	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000051897.1	UniProtKB/TrEMBL
	ENSPPAT00000051904.1	UniProtKB/TrEMBL
	ENSPPAT00000051915.1	UniProtKB/TrEMBL
	ENSPPAT00000051916.1	UniProtKB/TrEMBL
	ENSPPAT00000051918.1	UniProtKB/TrEMBL
	ENSPPAT00000051919.1	UniProtKB/TrEMBL
InterPro	SS18_N	UniProtKB/TrEMBL
KEGG Report	pps:100973397	UniProtKB/TrEMBL
NCBI Gene	SS18	ENTREZGENE
PANTHER	PROTEIN SSXT	UniProtKB/TrEMBL
	PTHR23107	UniProtKB/TrEMBL
Pfam	SSXT	UniProtKB/TrEMBL
UniProt	A0A2R9BHB4	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BHD8_PANPA	UniProtKB/TrEMBL
	A0A2R9BIC0_PANPA	UniProtKB/TrEMBL
	A0A2R9BKY5_PANPA	UniProtKB/TrEMBL
	A0A2R9BR14	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BR29_PANPA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-01-29	SS18	SS18 subunit of BAF chromatin remodeling complex		SS18, nBAF chromatin remodeling complex subunit	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD