TCERG1 (transcription elongation regulator 1) - Rat Genome Database

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Gene: TCERG1 (transcription elongation regulator 1) Pan paniscus
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Symbol: TCERG1
Name: transcription elongation regulator 1
RGD ID: 12025604
Description: ENCODES a protein that exhibits identical protein binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN mRNA processing (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24141,698,973 - 141,763,292 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15139,838,669 - 139,902,843 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05141,895,031 - 141,959,180 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15147,908,980 - 147,972,277 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5147,908,980 - 147,972,277 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TCERG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24141,698,973 - 141,763,292 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15139,838,669 - 139,902,843 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05141,895,031 - 141,959,180 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15147,908,980 - 147,972,277 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5147,908,980 - 147,972,277 (+)Ensemblpanpan1.1panPan2
TCERG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385146,447,330 - 146,511,961 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5146,447,311 - 146,511,961 (+)EnsemblGRCh38hg38GRCh38
GRCh375145,826,893 - 145,891,524 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365145,807,066 - 145,871,262 (+)NCBINCBI36Build 36hg18NCBI36
Build 345145,807,086 - 145,871,263NCBI
Celera5141,908,056 - 141,972,523 (+)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5140,973,807 - 141,037,975 (+)NCBIHuRef
CHM1_15145,259,570 - 145,323,747 (+)NCBICHM1_1
T2T-CHM13v2.05146,983,202 - 147,047,833 (+)NCBIT2T-CHM13v2.0
Tcerg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391842,644,369 - 42,708,850 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1842,644,552 - 42,708,858 (+)EnsemblGRCm39 Ensembl
GRCm381842,511,304 - 42,575,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1842,511,487 - 42,575,793 (+)EnsemblGRCm38mm10GRCm38
MGSCv371842,671,141 - 42,735,439 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361842,637,460 - 42,701,758 (+)NCBIMGSCv36mm8
Celera1843,879,237 - 43,945,169 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1822.66NCBI
Tcerg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81834,756,558 - 34,817,441 (+)NCBIGRCr8
mRatBN7.21834,505,708 - 34,566,470 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1834,505,751 - 34,566,470 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1834,609,904 - 34,670,616 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01835,328,219 - 35,388,929 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01834,705,128 - 34,765,838 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01836,796,290 - 36,889,966 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1836,829,062 - 36,889,966 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01836,491,800 - 36,552,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41835,716,853 - 35,778,041 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11835,752,130 - 35,813,071 (+)NCBI
Celera1834,100,586 - 34,161,245 (+)NCBICelera
Cytogenetic Map18p11NCBI
Tcerg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554157,597,557 - 7,663,207 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554157,597,557 - 7,665,215 (-)NCBIChiLan1.0ChiLan1.0
TCERG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1240,855,973 - 40,920,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl240,856,045 - 40,919,571 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha237,899,744 - 37,965,565 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0241,312,051 - 41,377,909 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl241,312,109 - 41,376,355 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1238,385,809 - 38,451,602 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0239,195,826 - 39,261,464 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0240,021,300 - 40,087,005 (+)NCBIUU_Cfam_GSD_1.0
Tcerg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213146,608,153 - 146,673,742 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365048,180,059 - 8,247,850 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365048,182,126 - 8,247,680 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCERG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2147,789,270 - 147,853,320 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12147,789,225 - 147,852,461 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22154,268,895 - 154,345,080 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TCERG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12349,026,214 - 49,089,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2349,026,250 - 49,090,063 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603428,700,070 - 28,764,005 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcerg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247745,922,477 - 5,994,415 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247745,925,737 - 5,991,861 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000043858   ⟹   ENSPPAP00000021059
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5147,908,980 - 147,972,277 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043878   ⟹   ENSPPAP00000021079
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5147,909,026 - 147,971,415 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043883   ⟹   ENSPPAP00000021084
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5147,909,026 - 147,968,730 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043898   ⟹   ENSPPAP00000021098
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5147,915,338 - 147,971,415 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043917   ⟹   ENSPPAP00000021117
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5147,915,338 - 147,971,415 (+)Ensembl
RefSeq Acc Id: XM_034960721   ⟹   XP_034816612
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,699,118 - 141,763,292 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,902,843 (+)NCBI
Mhudiblu_PPA_v05141,895,031 - 141,959,180 (+)NCBI
RefSeq Acc Id: XM_034960722   ⟹   XP_034816613
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,698,988 - 141,763,292 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,902,843 (+)NCBI
Mhudiblu_PPA_v05141,895,085 - 141,959,180 (+)NCBI
RefSeq Acc Id: XM_034960723   ⟹   XP_034816614
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,699,118 - 141,763,292 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,902,843 (+)NCBI
Mhudiblu_PPA_v05141,895,057 - 141,959,180 (+)NCBI
RefSeq Acc Id: XM_034960724   ⟹   XP_034816615
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,699,118 - 141,763,292 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,902,843 (+)NCBI
Mhudiblu_PPA_v05141,895,096 - 141,959,180 (+)NCBI
RefSeq Acc Id: XM_034960725   ⟹   XP_034816616
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,698,973 - 141,763,292 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,902,843 (+)NCBI
Mhudiblu_PPA_v05141,895,057 - 141,959,180 (+)NCBI
RefSeq Acc Id: XM_055112749   ⟹   XP_054968724
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,699,118 - 141,763,292 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,902,843 (+)NCBI
RefSeq Acc Id: XM_055112750   ⟹   XP_054968725
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,699,118 - 141,763,292 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,902,843 (+)NCBI
RefSeq Acc Id: XM_055112751   ⟹   XP_054968726
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,699,118 - 141,763,292 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,902,843 (+)NCBI
RefSeq Acc Id: XM_055112753   ⟹   XP_054968728
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,699,118 - 141,761,951 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,901,502 (+)NCBI
RefSeq Acc Id: XM_063604665   ⟹   XP_063460735
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,699,118 - 141,759,737 (+)NCBI
RefSeq Acc Id: XR_004671692
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,699,118 - 141,762,363 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,901,914 (+)NCBI
Mhudiblu_PPA_v05141,895,096 - 141,958,256 (+)NCBI
RefSeq Acc Id: XR_008625444
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24141,698,988 - 141,762,363 (+)NCBI
NHGRI_mPanPan15139,838,669 - 139,901,914 (+)NCBI
RefSeq Acc Id: XP_034816612   ⟸   XM_034960721
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B113 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034816614   ⟸   XM_034960723
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B113 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034816616   ⟸   XM_034960725
- Peptide Label: isoform X5
- UniProtKB: A0A2R9B113 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034816613   ⟸   XM_034960722
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B113 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034816615   ⟸   XM_034960724
- Peptide Label: isoform X4
- UniProtKB: A0A2R9AUZ0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000021059   ⟸   ENSPPAT00000043858
Ensembl Acc Id: ENSPPAP00000021079   ⟸   ENSPPAT00000043878
Ensembl Acc Id: ENSPPAP00000021084   ⟸   ENSPPAT00000043883
Ensembl Acc Id: ENSPPAP00000021098   ⟸   ENSPPAT00000043898
Ensembl Acc Id: ENSPPAP00000021117   ⟸   ENSPPAT00000043917
RefSeq Acc Id: XP_054968724   ⟸   XM_055112749
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054968725   ⟸   XM_055112750
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054968726   ⟸   XM_055112751
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054968728   ⟸   XM_055112753
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063460735   ⟸   XM_063604665
- Peptide Label: isoform X10
Protein Domains
FF   WW


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033605 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043858.1 UniProtKB/TrEMBL
  ENSPPAT00000043878.1 UniProtKB/TrEMBL
  ENSPPAT00000043883.1 UniProtKB/TrEMBL
  ENSPPAT00000043898.1 UniProtKB/TrEMBL
  ENSPPAT00000043917.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.440 UniProtKB/TrEMBL
  2.20.70.10 UniProtKB/TrEMBL
InterPro FF_domain UniProtKB/TrEMBL
  FF_domain_sf UniProtKB/TrEMBL
  TCRG1-like UniProtKB/TrEMBL
  WW_dom UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/TrEMBL
NCBI Gene TCERG1 ENTREZGENE
PANTHER PTHR15377 UniProtKB/TrEMBL
  TRANSCRIPTION ELONGATION REGULATOR 1 UniProtKB/TrEMBL
Pfam PF00397 UniProtKB/TrEMBL
  PF01846 UniProtKB/TrEMBL
PROSITE PS51676 UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/TrEMBL
SMART SM00441 UniProtKB/TrEMBL
  SM00456 UniProtKB/TrEMBL
Superfamily-SCOP SSF51045 UniProtKB/TrEMBL
  SSF81698 UniProtKB/TrEMBL
UniProt A0A2R9AUZ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AV70_PANPA UniProtKB/TrEMBL
  A0A2R9B0Z2_PANPA UniProtKB/TrEMBL
  A0A2R9B113 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B118_PANPA UniProtKB/TrEMBL