Advanced Search (OLGA)

Gene: SEMA3C (semaphorin 3C) Pan paniscus

Analyze

Symbol:

SEMA3C

Name:

semaphorin 3C

RGD ID:

12016627

Description:

ENCODES a protein that exhibits chemorepellent activity (inferred); semaphorin receptor binding (inferred); INVOLVED IN blood vessel remodeling (ortholog); dichotomous subdivision of terminal units involved in salivary gland branching (ortholog); heart development (ortholog); ASSOCIATED WITH epilepsy (ortholog); High Myopia (ortholog); Persistent Truncus Arteriosus (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

semaphorin-3C

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SEMA3C (semaphorin 3C)	NCBI	Ortholog
Mus musculus (house mouse):	Sema3c (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sema3c (semaphorin 3C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sema3c (semaphorin 3C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SEMA3C (semaphorin 3C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sema3c (semaphorin 3C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SEMA3C (semaphorin 3C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SEMA3C (semaphorin 3C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sema3c (semaphorin 3C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	98,593,805 - 98,771,389 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	146,858,443 - 147,035,246 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	72,706,615 - 72,884,163 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	86,369,036 - 86,545,580 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	86,368,753 - 86,545,580 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

High Myopia (ISO)

Persistent Truncus Arteriosus (ISO)

pleomorphic xanthoastrocytoma (ISO)

rheumatoid arthritis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IEA)

blood vessel remodeling (IEA,ISO)

cardiac endothelial to mesenchymal transition (IEA)

cardiac right ventricle morphogenesis (IEA)

cell differentiation (IEA)

dichotomous subdivision of terminal units involved in salivary gland branching (IEA,ISO)

heart development (IEA,ISO)

limb bud formation (IEA)

negative chemotaxis (IEA)

nervous system development (IEA)

neural crest cell migration (IEA,ISO)

neural tube development (IEA)

outflow tract morphogenesis (IEA)

outflow tract septum morphogenesis (IEA)

positive regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis (IEA)

positive regulation of cell migration (IEA)

post-embryonic development (IEA,ISO)

pulmonary myocardium development (IEA)

semaphorin-plexin signaling pathway (IEA)

somitogenesis (IEA)

Cellular Component

extracellular region (IEA)

extracellular space (IEA)

plasma membrane (IEA)

Molecular Function

chemorepellent activity (IEA)

protein binding (ISO)

semaphorin receptor binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SEMA3C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	98,593,805 - 98,771,389 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	146,858,443 - 147,035,246 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	72,706,615 - 72,884,163 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	86,369,036 - 86,545,580 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	86,368,753 - 86,545,580 (-)	Ensembl	panpan1.1		panPan2

SEMA3C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	80,742,538 - 80,922,389 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	80,742,538 - 80,922,359 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	80,371,854 - 80,551,705 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	80,209,790 - 80,386,603 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	80,016,505 - 80,193,318	NCBI
Celera	7	75,072,464 - 75,249,324 (-)	NCBI		Celera
Cytogenetic Map	7	q21.11	NCBI
HuRef	7	74,974,724 - 75,151,804 (-)	NCBI		HuRef
CHM1_1	7	80,302,304 - 80,479,089 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	81,993,843 - 82,173,749 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	79,703,271 - 79,880,104 (-)	NCBI

Sema3c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	17,779,814 - 17,935,266 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	17,779,279 - 17,935,266 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	17,574,816 - 17,730,268 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	17,574,281 - 17,730,268 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	17,080,634 - 17,236,086 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	17,086,640 - 17,242,092 (+)	NCBI		MGSCv36	mm8
Celera	5	14,560,250 - 14,706,435 (+)	NCBI		Celera
Cytogenetic Map	5	A3	NCBI
cM Map	5	7.99	NCBI

Sema3c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	18,538,452 - 18,702,453 (-)	NCBI		GRCr8
mRatBN7.2	4	17,583,212 - 17,747,234 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	17,583,212 - 17,746,534 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	22,712,061 - 22,873,424 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	18,529,563 - 18,690,775 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	16,909,994 - 17,071,367 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	14,318,276 - 14,490,438 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	14,318,274 - 14,490,446 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	14,315,785 - 14,464,552 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	4	14,293,370 - 14,301,988 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	13,739,659 - 13,914,636 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	13,742,156 - 13,940,776 (-)	NCBI
Celera	4	13,120,876 - 13,281,356 (-)	NCBI		Celera
Cytogenetic Map	4	q11	NCBI

Sema3c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	4,794,477 - 4,954,906 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955410	4,795,658 - 4,953,460 (+)	NCBI	ChiLan1.0	ChiLan1.0

SEMA3C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	20,457,683 - 20,748,008 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	20,459,925 - 20,635,276 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	20,127,137 - 20,308,722 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	20,902,897 - 21,081,564 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	20,902,900 - 21,079,854 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	20,529,290 - 20,710,735 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	20,081,763 - 20,263,578 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	20,737,406 - 20,919,731 (-)	NCBI		UU_Cfam_GSD_1.0

Sema3c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	62,334,007 - 62,493,720 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936810	903,304 - 1,063,024 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936810	903,306 - 1,063,024 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEMA3C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	99,251,715 - 99,433,224 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	99,114,649 - 99,432,683 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	109,599,201 - 109,733,310 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEMA3C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	67,974,074 - 68,154,383 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	67,974,317 - 68,154,439 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	35,792,898 - 35,971,861 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sema3c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	29,484,461 - 29,626,619 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624739	29,484,557 - 29,642,981 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003822744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063605953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000063842 ⟹ ENSPPAP00000040921

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	86,368,753 - 86,545,580 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000063848 ⟹ ENSPPAP00000040927

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	86,371,394 - 86,455,787 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000063849 ⟹ ENSPPAP00000040928

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	86,371,394 - 86,455,319 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000063853 ⟹ ENSPPAP00000040932

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	7	86,371,394 - 86,455,216 (-)	Ensembl

RefSeq Acc Id:

XM_003822744 ⟹ XP_003822792

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	98,593,805 - 98,771,389 (-)	NCBI
NHGRI_mPanPan1	7	146,858,443 - 147,035,246 (-)	NCBI
Mhudiblu_PPA_v0	7	72,706,615 - 72,884,163 (-)	NCBI
PanPan1.1	7	86,369,036 - 86,545,580 (-)	NCBI

Sequence:

show sequence

GGACTGCGAAAGGAGCAGGGTTGCGGAGCTAGGGCTCCAGCCTGCGGCCGCGCATTCTTGCCTC
TGGCCAGCCGCGGGCTCTAAGGGTCGGCCCCGCCCGGCCCGCCCCCGCGGCTCCCTGCCAGGCT
CTCGCGNNNNNNNNNNNNNNNNNNNNCGGGGCAGCCGGAGCCGCGCGCCGCGGCGCTGTAATCG
GACACCAAGAGCGCTCGCCCCCGGCCTCCGGCCACTTTCCATTCACTCCGAGGTGCTTGATTGA
GCGACGCGGAGAAGAGCTCCGGGTGCCGCGGCACTGCAGCGCTGAGATTCCTTTACAAAGAAAC
TCAGAGGACCGGGAAGAAAGAATTTCACCTTTGCGACGTGCTAGAAAATAAGGTCGTCTGGGAA
AAGGACTGGAGACACAAGCGGATCCAACCCCGGTAGCAAACTGATGACTTTTCCGCGCTGATTT
CTTTCAACCTCGGTATTTTCCCTTGGATATTAACTTGCATATCTGAAGAAATGGCATTCCGGAC
AATTTGCGTGTTGATTGGAGTATTTATTTGTTCTATCTGTGTAAAAGGATCTTCCCAGCCCCAA
GCAAGAGTTTATTTAACATTTGATGAACTTCGAGAAACCAAGACCTCTGAATACTTCAGCCTTT
CCCACCATCCTTTAGACTACAGGATTTTATTAATGGATGAAGATCAGGACCGGATATATGTGGG
AAGCAAAGATCACATTCTTTCCCTGAATATTAACAATATAAGTCAAGAAGCTTTGAGTGTTTTC
TGGCCAGCATCTACAATCAAAGTTGAAGAATGCAAAATGGCTGGCAAAGATCCCACACACGGCT
GTGGGAACTTTGTCCGTGTAATTCAGACTTTCAATCGCACACATTTGTATGTCTGTGGGAGTGG
CGCTTTCAGTCCTGTCTGTACTTACTTGAACAGAGGGAGGAGATCAGAGGACCAAGTTTTCATG
ATTGACTCCAAGTGTGAATCTGGAAAAGGACGCTGCTCTTTCAACCCCAACGTGAACACGGTGT
CTGTTATGATCAATGAGGAGCTTTTCTCTGGAATGTATATAGATTTCATGGGGACAGATGCTGC
TATTTTTCGAAGTTTAACCAAGAGAAATGCGGTCAGAACTGATCAACATAATTCCAAATGGCTA
AGTGAACCTATGTTTGTAGATGCACATGTCATCCCAGATGGTACTGATCCAAATGATGCTAAGG
TGTACTTCTTCTTCAAAGAAAAACTGACTGACAATAACAGGAGCACGAAACAGATTCATTCCAT
GATTGCTCGAATATGTCCTAATGACACTGGTGGACTGCGTAGCCTTGTCAACAAGTGGACCACT
TTCTTAAAGGCGAGGCTGGTGTGCTCGGTAACAGATGAAGACGGCCCAGAAACACACTTTGATG
AATTAGAGGATGTGTTTCTGCTGGAAACTGATAACCCGAGGACAACACTAGTGTATGGCATTTT
TACAACATCAAGCTCAGTTTTCAAAGGATCAGCCGTGTGTGTGTATCATTTATCTGATATACAG
ACTGTGTTTAATGGGCCTTTTGCCCACAAAGAAGGGCCCAATCATCAGCTGATTTCCTATCAGG
GCAGAATTCCATATCCTCGCCCTGGAACTTGTCCAGGAGGAGCATTCACACCCAATATGCGAAC
CACCAAGGAGTTCCCAGATGATGTTGTCACTTTTATTCGGAACCATCCTCTCATGTACAATTCC
ATCTACCCAATCCACAAAAGGCCTTTGATTGTTCGTATTGGCACTGACTACAAGTATACAAAGA
TAGCTGTGGATCGAGTGAACGCTGCTGATGGGAGATACCATGTCCTGTTTCTTGGAACAGATCG
GGGTACTGTGCAAAAAGTGGTTGTTCTTCCTACTAACAACTCTGTCAGTGGCGAGCTCATTCTG
GAGGAGCTGGAAGTCTTTAAGAATCATGCTCCTATAACAACAATGAAAATTTCATCTAAAAAGC
AACAGTTGTATGTGAGTTCCAATGAAGGGGTTTCCCAAGTATCTCTGCACCGCTGCCACATCTA
TGGTACAGCCTGTGCTGACTGCTGCCTGGCGCGGGACCCTTATTGCGCCTGGGATGGCCATTCC
TGTTCCAGATTCTACCCAACTGGGAAACGGAGGAGCCGAAGACAAGATGTGAGACATGGAAACC
CACTGACTCAATGCAGAGGATTTAATCTAAAAGCATACAGAAATGCAGCTGAAATTGTCCAGTA
TGGAGTAAAAAATAACACCACTTTTCTGGAGTGTGCCCCCAAGTCTCCGCAGGCATCTATCAAG
TGGCTGTTACAGAAAGACAAAGACAGGAGGAAAGAGGTTAAGCTGAATGAACGAATAATAGCCA
CTTCACAGGGACTCCTGATCCGCTCTGTTCAGGGTTCTGACCAAGGACTTTATCACTGCATTGC
TACAGAAAATAGTTTCAAGCAGACCATAGCCAAGATCAACTTCAAAGTTTTAGATTCAGAAATG
GTGGCTGTTGTGACAGACAAATGGTCCCCATGGACCTGGGCCAGCTCTGTGAGGGCTTTACCCT
TCCACCCGAAGGACATCATGGGGGCATTCAGCCACTCAGAAATGCAGATGATTAACCAATACTG
CAAAGACACTCGGCAGCAACATCAGCAGGGAGATGAATCACAGAAAATGAGAGGGGACTATGGC
AAGTTAAAGGCCCTCATCAATAGTCGGAAAAGTAGAAACAGGAGGAATCAGTTGCCAGAGTCAT
AATATTTTCTTATGTGGGTCTTATGCTTCCATTAACAAATGCTCTGTCTTCAATGATCAAATTT
TGAGCAAAGAAACTTGTGCTTTACCAAGGGGAATTACTGAAAAAGGTGATTACTCCTGAAGTGA
GTTTTACACGAACTGAAATGAGCATGCATTTTCTTGTATGATAGTGACTAGCACTAGACATGTC
ATGGTCCTCATGGTGCATATAAATATTTAACTTAACCCAGATTTTATTTATATCTTTATTCACC
TTTTCTTCAAAATCGATATGGTGGCTGCAAAACTAGAATTGTTGCATCCCTCAATTGAATGAGG
GCCATATCCCTGTGGTATTCCTTTCCTGCTTTGGGGCTTTAGAATTCTAATTGTCAGTGATTTT
GTATATGAAAACAAGTTGCAAATTCACAGCTTTTACGTAGTAAAAGTCATAAATGCATATGACA
GAATGGCTATCAAAAGAAATAGAAAAGGAAGACGGCATTTAAAGTTGTATAAAAACATGAGTTA
CTCATAAAGAGAAAATGATGAGTTTTTATGGTTCCAATGAAATATGTTGGGTTTTTTTTTAAGA
TGGTAAAAATAATCAGTTACTGGTATCTGTCACTGACCTTTGTTTCCTTATTCAGGAAGATAAA
AATCAGTAACCTACCCCATGAAGATATTTGGTGGGAGTTATATCAGTGAAGCAGTTCGGTTTAT
ATTCTTATGTTATCACCTTCCAAACAAAAGCACTTACTTTTTTTGGAAGTTATTTAATTTATTT
TAGACTCAAAGAATATAATCTTGCACTACTCAGTTATTACTGTTTGTTCTCTTATTTCCTAGTC
TGTGTGGCAAATTAAACAATATAAGAAGGAAAAATTTGAAGTATTAGACTTCTAATTAAGGGGT
GAAATCATCAAAAAGAAAAATCAAAGTAGAAACTACTAATTTTTTAAGAGGAATTTATAACAAA
TATGTCTAGTTTTCAACTTCAGTACTCAAATTCAATGATTCTTCCTTTTATTAAAACCAGTCTC
AGATATCATACTGATTTTTAAGTCAACACTATATATTTTATGATCTTTTCAGTGTGATGGCAAG
GTGCTTGTTATGTCTAGAAAGTAAGAAAACAATATGAGGAGACATTCTTTCTTTCAAAAGGTAA
TGGTACATACGTTCACTGGTCTCTAAGTGTAAATGTAGTAAGTTTTGTGATGAATAAAATAATT
ATCTCCTAATTGTATGTTTGAATAATTTTATTAGAATAATTTCATACTGAAATTATTTTCTCCA
AATAAAAATTAGATGGAAAAATGTGAAAAAAATTATTCATGTTCTCATATATATTTTAAAAACA
CTACTTTTGCTTTTTTATTTACCTTTTAAGACATTTTCATGCTTCCAGGTAAAAACAGATATTG
TACCATGTACCTAATCCAAATATCGTATAAACATTTTATTTATAGTTAATAATCTATGATGAAG
GTAATTAAAGTAGATTATGGCCTTTTTAAGTATTGCAGTCTAAAACTTCAAAAACTAAAATCAT
TGTCAAAATGAATATGATTATTAATCAGAATATCAGAATATGATTCACTATTTAAACTATGATA
AATTATGATAATATATGAGGAGGCCTCGCTATAGCAAAAATAGTTAAAATGCATGACATAATAC
CAAACTTCATTTTTAAAAAAATCTGTTGTTCCAAATGTGTATAATTTTAAAGTAATTTCTAAAG
CAGTTTATTATAATGGTTTGCCTGCTTAAAAGGTATAATTAAACTTCTTTTCTCTTCTACACTG
ACACACAGAAATGTGTCAATGTAAAGCCAAAACCATCTTCTGTGTTTATGGCCAGTCTATTCTC
AAAGTTAAAAGTAAAATTGTTTCAGAGTCACAGTTCCCTTTATTTCACATAAGCCCAAACCGAT
AGACAGTAACGGTGTTTAGTTTTATACTATATTTGTGCTATTTAATTCTATTTCCACAATTATT
AAATTGTGTACACTTTCATTACTTTTAAAAATGTAGAAATTCTTCATGAACATAACTCTGCTGA
ATGTAAAAGAAAATTTTTTTTCAAAAATGCTGTTAATGTATACTACTGGTGGTTGATTGGTTTT
ATTTTATGTAGTTTGACAATTCAGTGACTTAATATCTATTCCATTTGTATTGTACATAAAATTT
TCTAGAAATGCACTTTTTTCCAAAGTGTAAGTTTGTGAATAGATTTTAGCATGATGAAACTGTC
ATAATGGTGAATGTTCAATCTGTGTAAGAAAACAAACTAAATGTAGTTGTCACACTAAAATTTA
ATTGGATATTGATGAAATCATTGGCCTGGCAAAATAAAACATGTTGAATTCCCCAA

hide sequence

RefSeq Acc Id:

XM_063605953 ⟹ XP_063462023

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	6	98,593,805 - 98,735,034 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003822792	(Get FASTA)	NCBI Sequence Viewer
	XP_063462023	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000040921
	ENSPPAP00000040921.1
	ENSPPAP00000040927.1
	ENSPPAP00000040928.1
	ENSPPAP00000040932.1

RefSeq Acc Id:	XP_003822792 ⟸ XM_003822744
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CG16 (UniProtKB/TrEMBL), A0A2R9CQG3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAFRTICVLIGVFICSICVKGSSQPQARVYLTFDELRETKTSEYFSLSHHPLDYRILLMDEDQD RIYVGSKDHILSLNINNISQEALSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQTFNRTHLY VCGSGAFSPVCTYLNRGRRSEDQVFMIDSKCESGKGRCSFNPNVNTVSVMINEELFSGMYIDFM GTDAAIFRSLTKRNAVRTDQHNSKWLSEPMFVDAHVIPDGTDPNDAKVYFFFKEKLTDNNRSTK QIHSMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDEDGPETHFDELEDVFLLETDNPRTTL VYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLISYQGRIPYPRPGTCPGGAFT PNMRTTKEFPDDVVTFIRNHPLMYNSIYPIHKRPLIVRIGTDYKYTKIAVDRVNAADGRYHVLF LGTDRGTVQKVVVLPTNNSVSGELILEELEVFKNHAPITTMKISSKKQQLYVSSNEGVSQVSLH RCHIYGTACADCCLARDPYCAWDGHSCSRFYPTGKRRSRRQDVRHGNPLTQCRGFNLKAYRNAA EIVQYGVKNNTTFLECAPKSPQASIKWLLQKDKDRRKEVKLNERIIATSQGLLIRSVQGSDQGL YHCIATENSFKQTIAKINFKVLDSEMVAVVTDKWSPWTWASSVRALPFHPKDIMGAFSHSEMQM INQYCKDTRQQHQQGDESQKMRGDYGKLKALINSRKSRNRRNQLPES hide sequence

Ensembl Acc Id:

ENSPPAP00000040921 ⟸ ENSPPAT00000063842

Ensembl Acc Id:

ENSPPAP00000040927 ⟸ ENSPPAT00000063848

Ensembl Acc Id:

ENSPPAP00000040928 ⟸ ENSPPAT00000063849

Ensembl Acc Id:

ENSPPAP00000040932 ⟸ ENSPPAT00000063853

RefSeq Acc Id:	XP_063462023 ⟸ XM_063605953
- Peptide Label:	isoform X1

Protein Domains

Ig-like Sema

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000043056	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000063842.1	UniProtKB/TrEMBL
	ENSPPAT00000063848.1	UniProtKB/TrEMBL
	ENSPPAT00000063849.1	UniProtKB/TrEMBL
	ENSPPAT00000063853.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	ligand-binding face of the semaphorins, domain 2	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	PSI	UniProtKB/TrEMBL
	Semap_dom	UniProtKB/TrEMBL
	Semap_dom_sf	UniProtKB/TrEMBL
	Semaphorin	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
KEGG Report	pps:100984137	UniProtKB/TrEMBL
NCBI Gene	SEMA3C	ENTREZGENE
PANTHER	PTHR11036	UniProtKB/TrEMBL
	SEMAPHORIN-3C	UniProtKB/TrEMBL
Pfam	I-set	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	SEMA	UniProtKB/TrEMBL
SMART	PSI	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	Plexin repeat	UniProtKB/TrEMBL
	SSF101912	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A2R9CG16	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9CIR5_PANPA	UniProtKB/TrEMBL
	A0A2R9CQG1_PANPA	UniProtKB/TrEMBL
	A0A2R9CQG3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD