PRPF39 (pre-mRNA processing factor 39)

Advanced Search (OLGA)

Gene: PRPF39 (pre-mRNA processing factor 39) Pan paniscus

Analyze

Symbol:

PRPF39

Name:

pre-mRNA processing factor 39

RGD ID:

12008166

Description:

ENCODES a protein that exhibits pre-mRNA 5'-splice site binding (inferred); INVOLVED IN mRNA 5'-splice site recognition (inferred); mRNA processing (inferred); RNA processing (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Fanconi anemia (ortholog); FOUND IN commitment complex (inferred); nucleus (inferred); U1 snRNP (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

pre-mRNA-processing factor 39; PRP39 pre-mRNA processing factor 39 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	46,256,678 - 46,288,112 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	45,473,188 - 45,504,622 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	25,700,636 - 25,732,012 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	44,027,452 - 44,059,865 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	44,027,452 - 44,059,865 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

Fanconi anemia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA 5'-splice site recognition (IEA)

mRNA processing (IEA)

RNA processing (IEA)

RNA splicing (IEA)

Cellular Component

commitment complex (IEA)

nucleus (IEA)

U1 snRNP (IEA)

U2-type prespliceosome (IEA)

Molecular Function

pre-mRNA 5'-splice site binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PRPF39
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	46,256,678 - 46,288,112 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	45,473,188 - 45,504,622 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	25,700,636 - 25,732,012 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	44,027,452 - 44,059,865 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	44,027,452 - 44,059,865 (+)	Ensembl	panpan1.1		panPan2

PRPF39
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	45,084,116 - 45,116,282 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	45,084,107 - 45,116,282 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	45,553,319 - 45,585,485 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	44,623,052 - 44,654,554 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	44,623,073 - 44,654,552	NCBI
Celera	14	25,414,556 - 25,446,057 (+)	NCBI		Celera
Cytogenetic Map	14	q21.2	NCBI
HuRef	14	25,663,974 - 25,695,536 (+)	NCBI		HuRef
CHM1_1	14	45,491,468 - 45,522,951 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	39,276,128 - 39,308,293 (+)	NCBI		T2T-CHM13v2.0

Prpf39
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	65,083,094 - 65,110,160 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	65,083,107 - 65,110,160 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	65,036,334 - 65,063,386 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	65,036,333 - 65,063,386 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	66,137,321 - 66,164,373 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	65,972,667 - 65,981,991 (+)	NCBI		MGSCv36	mm8
Celera	12	66,166,020 - 66,193,073 (+)	NCBI		Celera
Cytogenetic Map	12	C1	NCBI
cM Map	12	27.21	NCBI

Prpf39
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	88,825,227 - 88,851,342 (+)	NCBI		GRCr8
mRatBN7.2	6	83,088,981 - 83,113,826 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	83,088,986 - 83,113,825 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	83,448,548 - 83,473,385 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	83,747,910 - 83,772,747 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	83,189,628 - 83,214,483 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	86,785,793 - 86,810,806 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	86,785,771 - 86,810,316 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	96,274,772 - 96,299,877 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	86,385,975 - 86,412,072 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	86,395,686 - 86,413,568 (+)	NCBI
Celera	6	81,656,963 - 81,681,773 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

Prpf39
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	16,824,638 - 16,845,778 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	16,824,638 - 16,845,778 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRPF39
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	22,510,816 - 22,549,481 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	22,511,329 - 22,549,226 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	22,329,071 - 22,367,476 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	22,670,271 - 22,708,705 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	22,670,294 - 22,708,701 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	22,332,687 - 22,371,098 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	22,399,191 - 22,437,601 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	22,735,047 - 22,773,473 (+)	NCBI		UU_Cfam_GSD_1.0

Prpf39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	54,494,288 - 54,526,534 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936583	4,161,945 - 4,194,699 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936583	4,162,381 - 4,194,615 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRPF39
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	175,285,270 - 175,317,298 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	175,285,219 - 175,317,245 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	195,153,563 - 195,185,567 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRPF39
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	22,204,010 - 22,235,740 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	22,216,451 - 22,239,051 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666116	306,474 - 338,254 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prpf39
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	23,409,610 - 23,450,772 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	23,409,610 - 23,450,286 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003831756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008957129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008957130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034937501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034937503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055097553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063596067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063596068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000031580 ⟹ ENSPPAP00000008940

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	14	44,027,452 - 44,059,865 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000031589 ⟹ ENSPPAP00000008949

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	14	44,027,467 - 44,059,865 (+)	Ensembl

RefSeq Acc Id:

XM_003831756 ⟹ XP_003831804

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	46,256,678 - 46,288,112 (+)	NCBI
NHGRI_mPanPan1	14	45,473,188 - 45,504,622 (+)	NCBI
Mhudiblu_PPA_v0	14	25,700,636 - 25,732,012 (+)	NCBI
PanPan1.1	14	44,027,452 - 44,059,865 (+)	NCBI

Sequence:

show sequence

ACTGACGCATGCGCATCGTGCCCTGGACCAGGCGGCCGTGGCGCGGGTGGCGGCTGCTGTGGTG
GCTGTGGGGACGGAGGCGGTGAAGTGCCATCTTCGGCTAGGTCGTCACAGGCTTCGGCTCATGG
CATCAAGTGGCATCCATCATAAGATCGTTAACTGAAGACAATATGCAAAATTCTCACATGGATG
AATACAGAAATTCTAGTAATGGCAGCACAGGCAACAGTTCAGAGGTAGTGGTAGAACATCCTAC
TGATTTCAGTACTGAGATTATGAACGTTACAGAAATGGAACAGTCACCTGATGACTCTCCCAAT
GTGAATGCATCTACAGAAGAAACTGAAATGGCAAGTGCTGTGGACCTTCCAGTGACGCTGACAG
AAACAGAAGCAAATTTCCCTCCAGAATATGAAAAATTTTGGAAAACTGTAGAAAATAATCCTCA
GGATTTTACAGGCTGGGTATATTTGCTTCAATATGTAGAACAGGAGAATCACTTGATGGCTGCC
AGGAAGGCATTTGACAGATTTTTCATACACTATCCTTATTGCTATGGTTACTGGAAAAAGTATG
CAGACCTTGAAAAGCGGCACGACAACATTAAACCATCAGATGAGGTTTATCGGCGGGGGCTTCA
GGCAATACCTCTTAGTGTTGACCTTTGGATACATTATATAAACTTCTTAAAAGAAACATTGGAC
CCTGGTGATCCTGAGACAAACAATACAATAAGAGGAACTTTTGAGCATGCTGTTCTAGCTGCAG
GAACAGATTTCCGTTCTGACAGACTGTGGGAAATGTATATAAACTGGGAAAATGAGCAGGGAAA
CCTGAGAGAAGTTACAGCTATATATGATCGTATTCTTGGTATTCCAACACAGCTGTATAGTCAT
CATTTTCAGAGATTTAAAGAACATGTACAGAATAATTTGCCTAGAGATCTTTTAACTGGTGAAC
AGTTTATTCAGTTGCGAAGGGAATTAGCTTCTGTAAATGGTCATAGTGGTGATGATGGTCCTCC
TGGTGATGATCTACCATCGGGAATTGAAGACATAACCGATCCTGCAAAGCTAATTACAGAAATA
GAAAACATGAGACATAGAATCATTGAGATTCATCAAGAAATGTTTAATTATAATGAGCATGAAG
TTAGTAAAAGGTGGACATTTGAAGAAGGTATTAAAAGACCTTACTTTCATGTGAAACCTTTGGA
AAAGGCACAACTAAAAAACTGGAAAGAATACTTAGAATTTGAAATTGAAAATGGGACTCATGAA
CGAGTTGTGGTTCTCTTTGAAAGATGTGTCATATCATGTGCCCTCTATGAGGAGTTTTGGATTA
AGTATGCCAAGTACATGGAAAACCATAGCATTGAAGGAGTGAGGCATGTCTTCAGCAGAGCTTG
TACTATACATCTCCCAAAGAAACCCATGGTGCATATGCTTTGGGCAGCTTTTGAGGAACAGCAG
GGTAATATTAATGAAGCCAGGAATATCTTGAGAACATTTGAAGAATGTGTTCTAGGATTGGCAA
TGGTTCGTTTACGAAGAGTAAGTTTAGAACGACGGCATGGAAATCTGGAAGAAGCTGAACATTT
GCTTCAGGATGCCATTAAGAATGCCAAATCAAATAATGAATCTTCATTTTATGCTGTCAAACTA
GCCCGGCATCTTTTCAAAATACAGAAAAACCTTCCAAAATCAAGAAAGGTGCTTTTGGAAGCAA
TCGAAAGAGACAAAGAGAACACAAAGTTATACCTCAATTTACTTGAAATGGAATATAGTGGTGA
CCTCAAACAAAATGAAGAAAATATCCTAAATTGTTTTGACAAAGCTGTACATGGTTCATTACCT
ATTAAAATGAGAATTACATTTTCTCAGAGAAAAGTGGAATTTCTTGAAGATTTTGGTTCCGATG
TTAATAAGCTTCTGAATGCTTATGATGAACATCAAACACTCCTGAAAGAACAGGATTCTTTAAA
AAGGAAAGCAGAAAATGGATCAGAAGAACCAGAGGAAAAGAAAGCACATACAGAAGATACAACT
TCATCATCTACACAGATGATTGATGGTGATTTACAGGCAAACCAAGCTGTATATAATTATAGTG
CATGGTATCAATACAATTATCAGAATCCTTGGAATTATGGACAATATTATCCTCCCCCTCCAAC
CTGATGGGAAAAATGTAAATTTCAAATGCAGTGTGTGAAAAGTATGAAATTATTATTTTTTTTA
ATGAGGGATGTAAACAGTATAAGCTTGTTGTATTTGATAACCTGTCTTCCTTGTTTCTGTGTAA
CATGATTTGTTTAGTAATAGGGGGAAAATGTCAATTAGTAGCTTACCACAGATACTGTTTCCTA
CCATTTATAAAATTTACTTTTTATTGAAAAACTATTTTTTGATTTTTGCATTAAGTGGTCTAGA
ATTCTTTTGCAATGCATTTGCAACAGAATTTTGTAGCCTTAAGGGGTAGGAAGAAAAACCTGAC
TGCAAATCATGTCAGTGTAGTACAAAATTCTGAAAACACATAAGGGCTGGTTATTTACCTCCTT
TTTTTTTTTAAAAAAAAAGGACTTTTAACCTTTGCTGACAAGGTTTTGTCTGTTTCAGTTATAC
TTGTGAATTGTGATCTAACTGCAGAAAGGATACACTATTAAAATACTTTGCCTTGGAATAGATT
ATAAATGAGAAAATGGAATGTTTGCATCCCTTTAAAAATGAAAATCATATCAAAAGTATGTTGT
TTCAGGAGACTTTGTATTTAGAATATTCATGTAAAACTTGTGAACAAGCTTTCATTTTGATCAA
ACTGATCTTCATTTTTGTAATAAAACGGAAGACTCATCCAGTAA

hide sequence

RefSeq Acc Id:

XM_008957129 ⟹ XP_008955377

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	46,268,661 - 46,288,112 (+)	NCBI
NHGRI_mPanPan1	14	45,485,171 - 45,504,622 (+)	NCBI
Mhudiblu_PPA_v0	14	25,712,571 - 25,732,012 (+)	NCBI
PanPan1.1	14	44,040,523 - 44,059,865 (+)	NCBI

Sequence:

show sequence

TATTGCTATGGTTACTGGAAAAAGTATGCAGACCTTGAAAAGCGGCACGACAACATTAAACCAT
CAGATGAGGTGCGTTAAACCTCTACAGTTTGTCAAGCTTTGCAGTGCAAGCCTCTGTATTACAC
TGCAGCTTAACAAACGCTGTCATTGATGCTCTAATGGGTCTGTGCCCTATGGTCTGTAACCCAA
AGCCTGCCCACACAACCCGGTCAGAATGCAGGGACTGCTGCGCTTTGAAGATCAAGACTCTGCA
CGTGGGGATCAGAACATTGCCATGTTCTATCCAACCTCCACCCAAATGGTTTATCGGCGGGGGC
TTCAGGCAATACCTCTTAGTGTTGACCTTTGGATACATTATATAAACTTCTTAAAAGAAACATT
GGACCCTGGTGATCCTGAGACAAACAATACAATAAGAGGAACTTTTGAGCATGCTGTTCTAGCT
GCAGGAACAGATTTCCGTTCTGACAGACTGTGGGAAATGTATATAAACTGGGAAAATGAGCAGG
GAAACCTGAGAGAAGTTACAGCTATATATGATCGTATTCTTGGTATTCCAACACAGCTGTATAG
TCATCATTTTCAGAGATTTAAAGAACATGTACAGAATAATTTGCCTAGAGATCTTTTAACTGGT
GAACAGTTTATTCAGTTGCGAAGGGAATTAGCTTCTGTAAATGGTCATAGTGGTGATGATGGTC
CTCCTGGTGATGATCTACCATCGGGAATTGAAGACATAACCGATCCTGCAAAGCTAATTACAGA
AATAGAAAACATGAGACATAGAATCATTGAGATTCATCAAGAAATGTTTAATTATAATGAGCAT
GAAGTTAGTAAAAGGTGGACATTTGAAGAAGGTATTAAAAGACCTTACTTTCATGTGAAACCTT
TGGAAAAGGCACAACTAAAAAACTGGAAAGAATACTTAGAATTTGAAATTGAAAATGGGACTCA
TGAACGAGTTGTGGTTCTCTTTGAAAGATGTGTCATATCATGTGCCCTCTATGAGGAGTTTTGG
ATTAAGTATGCCAAGTACATGGAAAACCATAGCATTGAAGGAGTGAGGCATGTCTTCAGCAGAG
CTTGTACTATACATCTCCCAAAGAAACCCATGGTGCATATGCTTTGGGCAGCTTTTGAGGAACA
GCAGGGTAATATTAATGAAGCCAGGAATATCTTGAGAACATTTGAAGAATGTGTTCTAGGATTG
GCAATGGTTCGTTTACGAAGAGTAAGTTTAGAACGACGGCATGGAAATCTGGAAGAAGCTGAAC
ATTTGCTTCAGGATGCCATTAAGAATGCCAAATCAAATAATGAATCTTCATTTTATGCTGTCAA
ACTAGCCCGGCATCTTTTCAAAATACAGAAAAACCTTCCAAAATCAAGAAAGGTGCTTTTGGAA
GCAATCGAAAGAGACAAAGAGAACACAAAGTTATACCTCAATTTACTTGAAATGGAATATAGTG
GTGACCTCAAACAAAATGAAGAAAATATCCTAAATTGTTTTGACAAAGCTGTACATGGTTCATT
ACCTATTAAAATGAGAATTACATTTTCTCAGAGAAAAGTGGAATTTCTTGAAGATTTTGGTTCC
GATGTTAATAAGCTTCTGAATGCTTATGATGAACATCAAACACTCCTGAAAGAACAGGATTCTT
TAAAAAGGAAAGCAGAAAATGGATCAGAAGAACCAGAGGAAAAGAAAGCACATACAGAAGATAC
AACTTCATCATCTACACAGATGATTGATGGTGATTTACAGGCAAACCAAGCTGTATATAATTAT
AGTGCATGGTATCAATACAATTATCAGAATCCTTGGAATTATGGACAATATTATCCTCCCCCTC
CAACCTGATGGGAAAAATGTAAATTTCAAATGCAGTGTGTGAAAAGTATGAAATTATTATTTTT
TTTAATGAGGGATGTAAACAGTATAAGCTTGTTGTATTTGATAACCTGTCTTCCTTGTTTCTGT
GTAACATGATTTGTTTAGTAATAGGGGGAAAATGTCAATTAGTAGCTTACCACAGATACTGTTT
CCTACCATTTATAAAATTTACTTTTTATTGAAAAACTATTTTTTGATTTTTGCATTAAGTGGTC
TAGAATTCTTTTGCAATGCATTTGCAACAGAATTTTGTAGCCTTAAGGGGTAGGAAGAAAAACC
TGACTGCAAATCATGTCAGTGTAGTACAAAATTCTGAAAACACATAAGGGCTGGTTATTTACCT
CCTTTTTTTTTTTAAAAAAAAAGGACTTTTAACCTTTGCTGACAAGGTTTTGTCTGTTTCAGTT
ATACTTGTGAATTGTGATCTAACTGCAGAAAGGATACACTATTAAAATACTTTGCCTTGGAATA
GATTATAAATGAGAAAATGGAATGTTTGCATCCCTTTAAAAATGAAAATCATATCAAAAGTATG
TTGTTTCAGGAGACTTTGTATTTAGAATATTCATGTAAAACTTGTGAACAAGCTTTCATTTTGA
TCAAACTGATCTTCATTTTTGTAATAAAACGGAAGACTCATCCAGTAA

hide sequence

RefSeq Acc Id:

XM_008957130 ⟹ XP_008955378

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	46,268,663 - 46,288,112 (+)	NCBI
NHGRI_mPanPan1	14	45,485,173 - 45,504,622 (+)	NCBI
Mhudiblu_PPA_v0	14	25,712,569 - 25,732,012 (+)	NCBI
PanPan1.1	14	44,040,495 - 44,059,865 (+)	NCBI

Sequence:

show sequence

ATTTGACAGATTTTTCATACACTATCCTTATTGCTATGGTTACTGGAAAAAGTATGCAGACCTT
GAAAAGCGGCACGACAACATTAAACCATCAGATGAGACGCTGTCATTGATGCTCTAATGGGTCT
GTGCCCTATGGTCTGTAACCCAAAGCCTGCCCACACAACCCGGTCAGAATGCAGGGACTGCTGC
GCTTTGAAGATCAAGACTCTGCACGTGGGGATCAGAACATTGCCATGTTCTATCCAACCTCCAC
CCAAATGGTTTATCGGCGGGGGCTTCAGGCAATACCTCTTAGTGTTGACCTTTGGATACATTAT
ATAAACTTCTTAAAAGAAACATTGGACCCTGGTGATCCTGAGACAAACAATACAATAAGAGGAA
CTTTTGAGCATGCTGTTCTAGCTGCAGGAACAGATTTCCGTTCTGACAGACTGTGGGAAATGTA
TATAAACTGGGAAAATGAGCAGGGAAACCTGAGAGAAGTTACAGCTATATATGATCGTATTCTT
GGTATTCCAACACAGCTGTATAGTCATCATTTTCAGAGATTTAAAGAACATGTACAGAATAATT
TGCCTAGAGATCTTTTAACTGGTGAACAGTTTATTCAGTTGCGAAGGGAATTAGCTTCTGTAAA
TGGTCATAGTGGTGATGATGGTCCTCCTGGTGATGATCTACCATCGGGAATTGAAGACATAACC
GATCCTGCAAAGCTAATTACAGAAATAGAAAACATGAGACATAGAATCATTGAGATTCATCAAG
AAATGTTTAATTATAATGAGCATGAAGTTAGTAAAAGGTGGACATTTGAAGAAGGTATTAAAAG
ACCTTACTTTCATGTGAAACCTTTGGAAAAGGCACAACTAAAAAACTGGAAAGAATACTTAGAA
TTTGAAATTGAAAATGGGACTCATGAACGAGTTGTGGTTCTCTTTGAAAGATGTGTCATATCAT
GTGCCCTCTATGAGGAGTTTTGGATTAAGTATGCCAAGTACATGGAAAACCATAGCATTGAAGG
AGTGAGGCATGTCTTCAGCAGAGCTTGTACTATACATCTCCCAAAGAAACCCATGGTGCATATG
CTTTGGGCAGCTTTTGAGGAACAGCAGGGTAATATTAATGAAGCCAGGAATATCTTGAGAACAT
TTGAAGAATGTGTTCTAGGATTGGCAATGGTTCGTTTACGAAGAGTAAGTTTAGAACGACGGCA
TGGAAATCTGGAAGAAGCTGAACATTTGCTTCAGGATGCCATTAAGAATGCCAAATCAAATAAT
GAATCTTCATTTTATGCTGTCAAACTAGCCCGGCATCTTTTCAAAATACAGAAAAACCTTCCAA
AATCAAGAAAGGTGCTTTTGGAAGCAATCGAAAGAGACAAAGAGAACACAAAGTTATACCTCAA
TTTACTTGAAATGGAATATAGTGGTGACCTCAAACAAAATGAAGAAAATATCCTAAATTGTTTT
GACAAAGCTGTACATGGTTCATTACCTATTAAAATGAGAATTACATTTTCTCAGAGAAAAGTGG
AATTTCTTGAAGATTTTGGTTCCGATGTTAATAAGCTTCTGAATGCTTATGATGAACATCAAAC
ACTCCTGAAAGAACAGGATTCTTTAAAAAGGAAAGCAGAAAATGGATCAGAAGAACCAGAGGAA
AAGAAAGCACATACAGAAGATACAACTTCATCATCTACACAGATGATTGATGGTGATTTACAGG
CAAACCAAGCTGTATATAATTATAGTGCATGGTATCAATACAATTATCAGAATCCTTGGAATTA
TGGACAATATTATCCTCCCCCTCCAACCTGATGGGAAAAATGTAAATTTCAAATGCAGTGTGTG
AAAAGTATGAAATTATTATTTTTTTTAATGAGGGATGTAAACAGTATAAGCTTGTTGTATTTGA
TAACCTGTCTTCCTTGTTTCTGTGTAACATGATTTGTTTAGTAATAGGGGGAAAATGTCAATTA
GTAGCTTACCACAGATACTGTTTCCTACCATTTATAAAATTTACTTTTTATTGAAAAACTATTT
TTTGATTTTTGCATTAAGTGGTCTAGAATTCTTTTGCAATGCATTTGCAACAGAATTTTGTAGC
CTTAAGGGGTAGGAAGAAAAACCTGACTGCAAATCATGTCAGTGTAGTACAAAATTCTGAAAAC
ACATAAGGGCTGGTTATTTACCTCCTTTTTTTTTTTAAAAAAAAAGGACTTTTAACCTTTGCTG
ACAAGGTTTTGTCTGTTTCAGTTATACTTGTGAATTGTGATCTAACTGCAGAAAGGATACACTA
TTAAAATACTTTGCCTTGGAATAGATTATAAATGAGAAAATGGAATGTTTGCATCCCTTTAAAA
ATGAAAATCATATCAAAAGTATGTTGTTTCAGGAGACTTTGTATTTAGAATATTCATGTAAAAC
TTGTGAACAAGCTTTCATTTTGATCAAACTGATCTTCATTTTTGTAATAAAACGGAAGACTCAT
CCAGTAA

hide sequence

RefSeq Acc Id:

XM_034937503 ⟹ XP_034793394

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	46,268,661 - 46,288,112 (+)	NCBI
NHGRI_mPanPan1	14	45,485,171 - 45,504,622 (+)	NCBI
Mhudiblu_PPA_v0	14	25,712,571 - 25,732,012 (+)	NCBI

RefSeq Acc Id:

XM_055097553 ⟹ XP_054953528

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	46,256,718 - 46,288,112 (+)	NCBI
NHGRI_mPanPan1	14	45,473,228 - 45,504,622 (+)	NCBI

RefSeq Acc Id:

XM_063596067 ⟹ XP_063452137

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	46,268,103 - 46,288,112 (+)	NCBI

RefSeq Acc Id:

XM_063596068 ⟹ XP_063452138

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	15	46,268,664 - 46,288,112 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003831804	(Get FASTA)	NCBI Sequence Viewer
	XP_008955377	(Get FASTA)	NCBI Sequence Viewer
	XP_008955378	(Get FASTA)	NCBI Sequence Viewer
	XP_034793394	(Get FASTA)	NCBI Sequence Viewer
	XP_054953528	(Get FASTA)	NCBI Sequence Viewer
	XP_063452137	(Get FASTA)	NCBI Sequence Viewer
	XP_063452138	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000008940
	ENSPPAP00000008940.1
	ENSPPAP00000008949.1

RefSeq Acc Id:	XP_003831804 ⟸ XM_003831756
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZVF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQNSHMDEYRNSSNGSTGNSSEVVVEHPTDFSTEIMNVTEMEQSPDDSPNVNASTEETEMASAV DLPVTLTETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDRFFIHYPYC YGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTF EHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLP RDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKLITEIENMRHRIIEIHQEM FNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCA LYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTFE ECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKS RKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEF LEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQAN QAVYNYSAWYQYNYQNPWNYGQYYPPPPT hide sequence

RefSeq Acc Id:

XP_008955377 ⟸ XM_008957129

- Peptide Label:

isoform X3

- Sequence:

show sequence

MQGLLRFEDQDSARGDQNIAMFYPTSTQMVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETN
NTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKE
HVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKLITEIENMRHRI
IEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFE
RCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEAR
NILRTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKI
QKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITF
SQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMI
DGDLQANQAVYNYSAWYQYNYQNPWNYGQYYPPPPT

hide sequence

RefSeq Acc Id:

XP_008955378 ⟸ XM_008957130

- Peptide Label:

isoform X3

- Sequence:

show sequence

MQGLLRFEDQDSARGDQNIAMFYPTSTQMVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETN
NTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKE
HVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKLITEIENMRHRI
IEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFE
RCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEAR
NILRTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKI
QKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITF
SQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMI
DGDLQANQAVYNYSAWYQYNYQNPWNYGQYYPPPPT

hide sequence

RefSeq Acc Id:	XP_034793394 ⟸ XM_034937503
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSPPAP00000008949 ⟸ ENSPPAT00000031589

Ensembl Acc Id:

ENSPPAP00000008940 ⟸ ENSPPAT00000031580

RefSeq Acc Id:	XP_054953528 ⟸ XM_055097553
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063452137 ⟸ XM_063596067
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063452138 ⟸ XM_063596068
- Peptide Label:	isoform X3

Protein Domains

Suppressor of forked

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000027707	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000031580.1	UniProtKB/TrEMBL
	ENSPPAT00000031589.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	HAT	UniProtKB/TrEMBL
	Suf	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
KEGG Report	pps:100989581	UniProtKB/TrEMBL
NCBI Gene	PRPF39	ENTREZGENE
PANTHER	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	UniProtKB/TrEMBL
	PRE-MRNA-PROCESSING FACTOR 39	UniProtKB/TrEMBL
Pfam	Suf	UniProtKB/TrEMBL
SMART	HAT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0A2R8ZVF2	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZVG1_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar