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Gene: NHEJ1 (non-homologous end joining factor 1) Pan paniscus

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Symbol:

NHEJ1

Name:

non-homologous end joining factor 1

RGD ID:

12004974

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA end binding (inferred); DNA polymerase binding (inferred); INVOLVED IN B cell differentiation (inferred); DNA repair (inferred); double-strand break repair (inferred); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH adenosine deaminase deficiency (ortholog); alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); FOUND IN nucleus (ortholog); site of double-strand break (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

non-homologous end-joining factor 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	121,706,164 - 121,794,017 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	121,707,845 - 121,806,459 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	106,326,596 - 106,419,928 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	224,926,183 - 225,012,551 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	224,926,183 - 225,008,788 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenosine deaminase deficiency (ISO)

alacrima, achalasia, and impaired intellectual development syndrome (ISO)

cerebrotendinous xanthomatosis (ISO)

choroid disease (ISO)

genetic disease (ISO)

Microphthalmia/Coloboma 13 (ISO)

myofibrillar myopathy 1 (ISO)

Neurodevelopmental Disorders (ISO)

paroxysmal nonkinesigenic dyskinesia 1 (ISO)

polydactyly (ISO)

severe combined immunodeficiency (ISO)

Severe Combined Immunodeficiency with Microcephaly, Growth Retardation, and Sensitivity to Ionizing Radiation (ISO)

syndactyly type 1 (ISO)

syndromic microphthalmia 9 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell differentiation (IEA)

DNA repair (IEA)

double-strand break repair (IEA)

double-strand break repair via nonhomologous end joining (IEA)

immunoglobulin V(D)J recombination (IEA)

response to ionizing radiation (IEA)

T cell differentiation (IEA)

telomere maintenance (IEA)

Cellular Component

DNA ligase IV complex (IEA)

DNA-dependent protein kinase-DNA ligase 4 complex (IEA)

fibrillar center (IEA)

nonhomologous end joining complex (IEA)

nucleoplasm (IEA)

nucleus (IEA,ISO)

site of double-strand break (IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA end binding (IEA)

DNA polymerase binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

non-homologous end joining pathway of double-strand break repair (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

NHEJ1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	121,706,164 - 121,794,017 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	121,707,845 - 121,806,459 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	106,326,596 - 106,419,928 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	224,926,183 - 225,012,551 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	224,926,183 - 225,008,788 (-)	Ensembl	panpan1.1		panPan2

NHEJ1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	219,069,357 - 219,160,815 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	219,069,355 - 219,160,869 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	219,934,079 - 220,025,537 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	219,648,292 - 219,733,767 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	213,709,738 - 213,795,304 (-)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	211,793,894 - 211,879,149 (-)	NCBI		HuRef
CHM1_1	2	219,947,414 - 220,032,919 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	219,557,705 - 219,649,239 (-)	NCBI		T2T-CHM13v2.0

Nhej1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	75,006,505 - 75,101,870 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	75,006,298 - 75,101,844 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	74,967,346 - 75,125,226 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	74,967,139 - 75,125,200 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	75,013,920 - 75,093,227 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	74,900,346 - 74,988,763 (-)	NCBI		MGSCv36	mm8
Celera	1	75,522,343 - 75,615,823 (-)	NCBI		Celera
Cytogenetic Map	1	C4	NCBI
cM Map	1	38.56	NCBI

Nhej1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	83,974,995 - 84,071,161 (-)	NCBI		GRCr8
mRatBN7.2	9	76,526,322 - 76,622,488 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	76,526,324 - 76,622,444 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	84,970,826 - 85,066,627 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,099,730 - 90,195,531 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	88,485,932 - 88,581,731 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	82,230,230 - 82,327,923 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,230,232 - 82,327,534 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	81,999,491 - 82,097,184 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	74,309,152 - 74,408,397 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	74,456,135 - 74,555,379 (-)	NCBI
Celera	9	74,096,462 - 74,192,613 (-)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

Nhej1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	14,281,069 - 14,363,876 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	14,278,773 - 14,362,167 (+)	NCBI	ChiLan1.0	ChiLan1.0

NHEJ1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	25,637,214 - 25,719,241 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	25,637,601 - 25,715,372 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	26,463,707 - 26,546,065 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	25,652,649 - 25,735,139 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	25,651,942 - 25,730,865 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	25,557,221 - 25,639,564 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	25,492,303 - 25,574,670 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	25,513,157 - 25,595,616 (-)	NCBI		UU_Cfam_GSD_1.0

Nhej1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	175,151,965 - 175,235,788 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	1,495,446 - 1,578,590 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	1,494,783 - 1,578,587 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NHEJ1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	121,100,628 - 121,194,042 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	121,100,624 - 121,190,086 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

NHEJ1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	104,981,313 - 105,071,828 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	104,982,380 - 105,068,999 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	94,328,589 - 94,420,113 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nhej1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	5,864,003 - 5,946,583 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	5,859,157 - 5,944,573 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003818637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003818638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008971983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008971984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008971985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063595563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063595564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063595565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000063295 ⟹ ENSPPAP00000040379

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	224,926,183 - 225,008,788 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000063298 ⟹ ENSPPAP00000040382

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	224,945,582 - 225,008,788 (-)	Ensembl

RefSeq Acc Id:

XM_003818637 ⟹ XP_003818685

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,706,164 - 121,791,969 (-)	NCBI
NHGRI_mPanPan1	2B	121,707,845 - 121,806,459 (-)	NCBI
Mhudiblu_PPA_v0	2B	106,333,275 - 106,418,603 (-)	NCBI
PanPan1.1	2B	224,926,183 - 225,011,225 (-)	NCBI

Sequence:

show sequence

ATAGGCCCCGCCCCTGTATCCCAAGACCCTGCCTCCTCTTGCGGTGGGGGGAAAGCGGCCTCTT
ACTCTAGGCCTTTCGGTTTGCGCGAGCGGGCAGGAAAGCGTGCGTGCGGCTAAGAGGGTGGGCG
CTCTCGCGGCCGCTGACGATGGAAGAACTGGAGCAAGGCCTGTTGATGCAGCCATGGGCGTGGC
TACAGCTTGCAGAGAACTCCCTCTTGGCCAAGGTTTTTATCACCAAGCAGGGCTATGCCTTGTT
GGTTTCAGATCTTCAACAGGTGTGGCATGAACAGGTGGACACTAGTGTGGTCAGCCAGCGAGCC
AAGGAGCTGAACAAGCGGCTCACTGCTCCTCCTGCAGCTTTCCTCTGTCATTTGGATAATCTCC
TTCGCCCATTGTTGAAGGACGCTGCTCACCCTAGCGAAGCTACCTTCTCCTGTGATTGTGTGGC
AGATGCACTGATTCTACGGGTGCGAAGTGAGCTCTCTGGCCTCCCCTTCTATTGGAATTTCCAC
TGCATCCTAGCTAATCCTTCCCTGGTCTCCCAACATTTGATTCGTCCTCTGATGGGCATGAGTC
TGGCATTACAGTGCCAAGTGAGGGAGCTAGCAACGTTACTTCATATGAAAGACCTAGAGATCCA
AGACTACCAGGAGAGTGGGGCTACGCTGATTCGAGATCGATTGAAGACAGAACCATTTGAAGAA
AATTCCTTCTTGGAACAATTTATGATAGAGAAACTGCCAGAGGCATGCAGCATTGGTGATGGAA
AGCCCTTTGTCATGAATCTGCAGAATCTGTATATGGCAGTCACCAAACAAGAGGTCCAAGTGGG
ACAGAAGCATCAAGGCACTGGAGATCCTCATACCTCAAACAGTGCTTCCCTGCAAGGAATCGAT
AGCCAATGTGTAAACCAGCCAGAACAACTGGTCTCCTCAGCCCCAACCCTCTCAGCACCTGAGA
AAGAGTCCACGGGTACTTCAGGCCCTCTGCAGAGACCTCAGCTGTCAAAGGTCAAGAGGAAGAA
GCCAAGAGGTCTCTTCAGTTAATCTGTTGTGGCCTCAGCTGCTGAGGATGGACTTGGAGAATAG
CTTCCAAGCTTCACCTTGAAAGAAGCTTACGTGGCAGCAATATTTCTAAAATAGTGATACAGTC
AGAGGCCTCCTGTAAGGGCGAGAGAACTGAAGTTCATGTTGACAGGCCCACAGGGAATTGGCCT
TCCCTGTTCAAGTGGAAGCCAGTCTCTGAGAATCCCGTGCTCTCCTCTCTTTTGGTGGAGGTTC
TGTAGGTTCAGGTTTCTACCATGGACTTTAGGTATATAGGGCAAGTCAGCAAGAAAGCACCACA
CACTCAGGAAGCCTTGTCTACCTTTCCCTAGCGTCTCTAGCCAGCCAGCCCCAGATACTCCTCA
GAGACCCACTTCTCTCTTTTGCATGGAATAAAAAGGACTCACAGTCCCTGCTTTTGGGATTACT
TATGCTGTGGAACTCATAACCCAATTCACTTCCTTCACTGGGTCCCACCCCATTGTTGTCTCTG
GATGAAGTCTAGCCATCACTCCGGTCCTTCAGATTCTTCATAAACTTTTCTGCAGTTGCCAGAG
CTAAGTCTCCATTTGGAAACTTCGATCTCAAGAACTCTCTTGATGGTGGGCACAAGACAGATAG
ATGATTGCTGCTTTCCTTTGCCAAACTTGGATGCATTTTTCTCTTTGTTTCCAAAGTATAGGCA
ACAGGTTAAACTACCACGTGGGGTAGTTTATCGATCCTCCCGCCTCATCCTTCTGCATAACTGG
GACTAAAGGCACACACCACCACACCTAGCTAATTTTTGTATTTTTTTGTGTGTGGAGACAAGGC
TTTGCCATGTTGCCCAGGCTGGTCTTGAACTCCTGGACTCTAGTGATCTGCCCACCTCAACCTC
CCCAAGTGCTGGGATTACAGGCATGAGCTACCACGCCTATCCCATTTCTGGTTTATTTACTTTT
GATGGTTAAATGCCTCCTTATTCAAATATCCTGTATATATACTGGTGTTTCTGTCCTGATGTCA
AGTCTCGAGAGAAGATGATCAAACAATAATAAAATAATTATAATAAGAACAACAATAA

hide sequence

RefSeq Acc Id:

XM_003818638 ⟹ XP_003818686

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,706,164 - 121,791,177 (-)	NCBI
NHGRI_mPanPan1	2B	121,707,845 - 121,806,141 (-)	NCBI
Mhudiblu_PPA_v0	2B	106,326,596 - 106,418,286 (-)	NCBI
PanPan1.1	2B	224,926,186 - 225,010,909 (-)	NCBI

Sequence:

show sequence

CTGGCTGCTGCCCGGCGTGGATGGTAGGGCTCGAGTGAAGATGGAAGAACTGGAGCAAGGCCTG
TTGATGCAGCCATGGGCGTGGCTACAGCTTGCAGAGAACTCCCTCTTGGCCAAGGTTTTTATCA
CCAAGCAGGGCTATGCCTTGTTGGTTTCAGATCTTCAACAGGTGTGGCATGAACAGGTGGACAC
TAGTGTGGTCAGCCAGCGAGCCAAGGAGCTGAACAAGCGGCTCACTGCTCCTCCTGCAGCTTTC
CTCTGTCATTTGGATAATCTCCTTCGCCCATTGTTGAAGGACGCTGCTCACCCTAGCGAAGCTA
CCTTCTCCTGTGATTGTGTGGCAGATGCACTGATTCTACGGGTGCGAAGTGAGCTCTCTGGCCT
CCCCTTCTATTGGAATTTCCACTGCATCCTAGCTAATCCTTCCCTGGTCTCCCAACATTTGATT
CGTCCTCTGATGGGCATGAGTCTGGCATTACAGTGCCAAGTGAGGGAGCTAGCAACGTTACTTC
ATATGAAAGACCTAGAGATCCAAGACTACCAGGAGAGTGGGGCTACGCTGATTCGAGATCGATT
GAAGACAGAACCATTTGAAGAAAATTCCTTCTTGGAACAATTTATGATAGAGAAACTGCCAGAG
GCATGCAGCATTGGTGATGGAAAGCCCTTTGTCATGAATCTGCAGAATCTGTATATGGCAGTCA
CCAAACAAGAGGTCCAAGTGGGACAGAAGCATCAAGGCACTGGAGATCCTCATACCTCAAACAG
TGCTTCCCTGCAAGGAATCGATAGCCAATGTGTAAACCAGCCAGAACAACTGGTCTCCTCAGCC
CCAACCCTCTCAGCACCTGAGAAAGAGTCCACGGGTACTTCAGGCCCTCTGCAGAGACCTCAGC
TGTCAAAGGTCAAGAGGAAGAAGCCAAGAGGTCTCTTCAGTTAATCTGTTGTGGCCTCAGCTGC
TGAGGATGGACTTGGAGAATAGCTTCCAAGCTTCACCTTGAAAGAAGCTTACGTGGCAGCAATA
TTTCTAAAATAGTGATACAGTCAGAGGCCTCCTGTAAGGGCGAGAGAACTGAAGTTCATGTTGA
CAGGCCCACAGGGAATTGGCCTTCCCTGTTCAAGTGGAAGCCAGTCTCTGAGAATCCCGTGCTC
TCCTCTCTTTTGGTGGAGGTTCTGTAGGTTCAGGTTTCTACCATGGACTTTAGGTATATAGGGC
AAGTCAGCAAGAAAGCACCACACACTCAGGAAGCCTTGTCTACCTTTCCCTAGCGTCTCTAGCC
AGCCAGCCCCAGATACTCCTCAGAGACCCACTTCTCTCTTTTGCATGGAATAAAAAGGACTCAC
AGTCCCTGCTTTTGGGATTACTTATGCTGTGGAACTCATAACCCAATTCACTTCCTTCACTGGG
TCCCACCCCATTGTTGTCTCTGGATGAAGTCTAGCCATCACTCCGGTCCTTCAGATTCTTCATA
AACTTTTCTGCAGTTGCCAGAGCTAAGTCTCCATTTGGAAACTTCGATCTCAAGAACTCTCTTG
ATGGTGGGCACAAGACAGATAGATGATTGCTGCTTTCCTTTGCCAAACTTGGATGCATTTTTCT
CTTTGTTTCCAAAGTATAGGCAACAGGTTAAACTACCACGTGGGGTAGTTTATCGATCCTCCCG
CCTCATCCTTCTGCATAACTGGGACTAAAGGCACACACCACCACACCTAGCTAATTTTTGTATT
TTTTTGTGTGTGGAGACAAGGCTTTGCCATGTTGCCCAGGCTGGTCTTGAACTCCTGGACTCTA
GTGATCTGCCCACCTCAACCTCCCCAAGTGCTGGGATTACAGGCATGAGCTACCACGCCTATCC
CATTTCTGGTTTATTTACTTTTGATGGTTAAATGCCTCCTTATTCAAATATCCTGTATATATAC
TGGTGTTTCTGTCCTGATGTCAAGTCTCGAGAGAAGATGATCAAACAATAATAAAATAATTATA
ATAAGAACAACAA

hide sequence

RefSeq Acc Id:

XM_063595563 ⟹ XP_063451633

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,706,164 - 121,791,163 (-)	NCBI

RefSeq Acc Id:

XM_063595564 ⟹ XP_063451634

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,706,164 - 121,790,638 (-)	NCBI

RefSeq Acc Id:

XM_063595565 ⟹ XP_063451635

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	121,706,164 - 121,794,017 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003818685	(Get FASTA)	NCBI Sequence Viewer
	XP_003818686	(Get FASTA)	NCBI Sequence Viewer
	XP_063451633	(Get FASTA)	NCBI Sequence Viewer
	XP_063451634	(Get FASTA)	NCBI Sequence Viewer
	XP_063451635	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000040379.1
	ENSPPAP00000040382.1

RefSeq Acc Id:	XP_003818685 ⟸ XM_003818637
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CEQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEELEQGLLMQPWAWLQLAENSLLAKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKR LTAPPAAFLCHLDNLLRPLLKDAAHPSEATFSCDCVADALILRVRSELSGLPFYWNFHCILANP SLVSQHLIRPLMGMSLALQCQVRELATLLHMKDLEIQDYQESGATLIRDRLKTEPFEENSFLEQ FMIEKLPEACSIGDGKPFVMNLQNLYMAVTKQEVQVGQKHQGTGDPHTSNSASLQGIDSQCVNQ PEQLVSSAPTLSAPEKESTGTSGPLQRPQLSKVKRKKPRGLFS hide sequence

RefSeq Acc Id:	XP_003818686 ⟸ XM_003818638
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CEQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEELEQGLLMQPWAWLQLAENSLLAKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKR LTAPPAAFLCHLDNLLRPLLKDAAHPSEATFSCDCVADALILRVRSELSGLPFYWNFHCILANP SLVSQHLIRPLMGMSLALQCQVRELATLLHMKDLEIQDYQESGATLIRDRLKTEPFEENSFLEQ FMIEKLPEACSIGDGKPFVMNLQNLYMAVTKQEVQVGQKHQGTGDPHTSNSASLQGIDSQCVNQ PEQLVSSAPTLSAPEKESTGTSGPLQRPQLSKVKRKKPRGLFS hide sequence

Ensembl Acc Id:

ENSPPAP00000040382 ⟸ ENSPPAT00000063298

Ensembl Acc Id:

ENSPPAP00000040379 ⟸ ENSPPAT00000063295

RefSeq Acc Id:	XP_063451635 ⟸ XM_063595565
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CEQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063451633 ⟸ XM_063595563
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063451634 ⟸ XM_063595564
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9CEQ8 (UniProtKB/TrEMBL)

Protein Domains

XLF-like coiled-coil region XLF-like N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000042844	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000063295.1	UniProtKB/TrEMBL
	ENSPPAT00000063298.1	UniProtKB/TrEMBL
Gene3D-CATH	2.170.210.10	UniProtKB/TrEMBL
	Helix hairpin bin	UniProtKB/TrEMBL
InterPro	NHEJ_factor	UniProtKB/TrEMBL
	XLF-like_CC	UniProtKB/TrEMBL
	XLF_fam	UniProtKB/TrEMBL
	XRCC4-like_N_sf	UniProtKB/TrEMBL
KEGG Report	pps:100992313	UniProtKB/TrEMBL
NCBI Gene	NHEJ1	ENTREZGENE
PANTHER	NON-HOMOLOGOUS END-JOINING FACTOR 1	UniProtKB/TrEMBL
	NON-HOMOLOGOUS END-JOINING FACTOR 1	UniProtKB/TrEMBL
Pfam	XLF	UniProtKB/TrEMBL
	XLF_CC	UniProtKB/TrEMBL
UniProt	A0A2R9CEQ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9CPI1_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIA

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIA

Imported Disease Annotations - OMIM

RGD Manual Annotations