TMED7 (transmembrane p24 trafficking protein 7) - Rat Genome Database

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Gene: TMED7 (transmembrane p24 trafficking protein 7) Pan paniscus
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Symbol: TMED7
Name: transmembrane p24 trafficking protein 7
RGD ID: 12002245
Description: INVOLVED IN protein transport (inferred); ASSOCIATED WITH autistic disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); endoplasmic reticulum-Golgi intermediate compartment (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane emp24 domain-containing protein 7; transmembrane emp24 protein transport domain containing 7
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24110,860,757 - 110,874,641 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15109,014,418 - 109,028,202 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05110,970,162 - 110,983,414 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15116,766,470 - 116,779,513 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5116,766,470 - 116,779,513 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMED7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24110,860,757 - 110,874,641 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15109,014,418 - 109,028,202 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05110,970,162 - 110,983,414 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15116,766,470 - 116,779,513 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5116,766,470 - 116,779,513 (-)Ensemblpanpan1.1panPan2
TMED7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385115,613,210 - 115,626,036 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5115,613,210 - 115,632,992 (-)EnsemblGRCh38hg38GRCh38
GRCh375114,948,907 - 114,961,733 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365114,977,102 - 114,989,595 (-)NCBINCBI36Build 36hg18NCBI36
Build 345114,977,101 - 114,989,595NCBI
Celera5110,898,179 - 110,911,150 (-)NCBICelera
Cytogenetic Map5q22.3NCBI
HuRef5110,130,510 - 110,143,485 (-)NCBIHuRef
CHM1_15114,381,532 - 114,394,506 (-)NCBICHM1_1
T2T-CHM13v2.05116,125,992 - 116,138,818 (-)NCBIT2T-CHM13v2.0
Tmed7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391846,718,995 - 46,730,602 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1846,693,302 - 46,730,602 (-)EnsemblGRCm39 Ensembl
GRCm381846,585,928 - 46,597,535 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1846,560,235 - 46,597,535 (-)EnsemblGRCm38mm10GRCm38
MGSCv371846,745,582 - 46,757,189 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361846,710,988 - 46,722,852 (-)NCBIMGSCv36mm8
Celera1847,945,556 - 47,957,160 (-)NCBICelera
Cytogenetic Map18CNCBI
cM Map1824.65NCBI
Tmed7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81841,505,167 - 41,512,243 (-)NCBIGRCr8
mRatBN7.21839,318,564 - 39,325,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1839,297,351 - 39,325,640 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1841,351,781 - 41,358,857 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01842,054,024 - 42,061,100 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01839,847,145 - 39,854,221 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01840,579,182 - 40,586,260 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1840,579,182 - 40,586,260 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01840,233,821 - 40,240,942 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41840,800,887 - 40,808,002 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11840,838,427 - 40,838,519 (+)NCBI
Celera1837,570,612 - 37,577,688 (-)NCBICelera
Cytogenetic Map18q11NCBI
TMED7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1115,342,265 - 5,356,828 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl115,342,265 - 5,356,828 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha115,492,917 - 5,507,480 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0115,334,331 - 5,348,924 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl115,334,331 - 5,349,013 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1115,289,646 - 5,304,207 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0115,358,822 - 5,373,386 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0115,612,704 - 5,627,313 (-)NCBIUU_Cfam_GSD_1.0
Tmed7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213128,079,197 - 128,090,975 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936742745,336 - 791,883 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936742779,964 - 791,738 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMED7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2119,788,483 - 119,804,463 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12119,794,608 - 119,804,406 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22124,682,078 - 124,691,898 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMED7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12318,864,021 - 18,875,089 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2318,866,758 - 18,874,975 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603459,522,754 - 59,534,106 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008952065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000033798   ⟹   ENSPPAP00000011143
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5116,766,470 - 116,779,513 (-)Ensembl
RefSeq Acc Id: XM_008952065   ⟹   XP_008950313
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24110,860,757 - 110,874,641 (-)NCBI
NHGRI_mPanPan15109,014,418 - 109,028,202 (-)NCBI
Mhudiblu_PPA_v05110,970,162 - 110,983,414 (-)NCBI
PanPan1.15116,766,470 - 116,779,513 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008950313 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000011143
  ENSPPAP00000011143.1
RefSeq Acc Id: XP_008950313   ⟸   XM_008952065
- UniProtKB: A0A2R9A1N0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000011143   ⟸   ENSPPAT00000033798
Protein Domains
GOLD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028777 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033798.1 UniProtKB/TrEMBL
Gene3D-CATH GOLD domain UniProtKB/TrEMBL
InterPro Emp24-like UniProtKB/TrEMBL
  GOLD_dom UniProtKB/TrEMBL
  GOLD_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100987289 UniProtKB/TrEMBL
NCBI Gene TMED7 ENTREZGENE
PANTHER PTHR22811 UniProtKB/TrEMBL
  PTHR22811:SF117 UniProtKB/TrEMBL
Pfam EMP24_GP25L UniProtKB/TrEMBL
PROSITE GOLD UniProtKB/TrEMBL
SMART EMP24_GP25L UniProtKB/TrEMBL
Superfamily-SCOP SSF101576 UniProtKB/TrEMBL
UniProt A0A2R9A1N0 ENTREZGENE, UniProtKB/TrEMBL