DLX3 (distal-less homeobox 3) - Rat Genome Database

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Gene: DLX3 (distal-less homeobox 3) Pan paniscus
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Symbol: DLX3
Name: distal-less homeobox 3
RGD ID: 11994592
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); INVOLVED IN blood vessel development (ortholog); odontoblast differentiation (ortholog); odontogenesis of dentin-containing tooth (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 1B (ortholog); amelogenesis imperfecta type 4 (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein DLX-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,174,243 - 66,179,497 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,980,766 - 70,986,020 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,076,437 - 44,081,690 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,950,467 - 48,955,848 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,950,474 - 48,955,848 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DLX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,174,243 - 66,179,497 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,980,766 - 70,986,020 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,076,437 - 44,081,690 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,950,467 - 48,955,848 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,950,474 - 48,955,848 (-)Ensemblpanpan1.1panPan2
DLX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381749,990,005 - 49,995,224 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1749,990,005 - 49,995,224 (-)EnsemblGRCh38hg38GRCh38
GRCh371748,067,369 - 48,072,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,422,368 - 45,427,587 (-)NCBINCBI36Build 36hg18NCBI36
Build 341745,422,369 - 45,427,587NCBI
Celera1744,522,674 - 44,527,893 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,432,201 - 43,437,420 (-)NCBIHuRef
CHM1_11748,131,324 - 48,136,543 (-)NCBICHM1_1
T2T-CHM13v2.01750,853,145 - 50,858,364 (-)NCBIT2T-CHM13v2.0
Dlx3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,010,943 - 95,016,122 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1195,010,945 - 95,016,122 (+)EnsemblGRCm39 Ensembl
GRCm381195,120,117 - 95,125,296 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,120,119 - 95,125,296 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,981,431 - 94,986,607 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,927,281 - 94,941,375 (+)NCBIMGSCv36mm8
Celera11104,731,026 - 104,736,202 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
Dlx3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81080,561,335 - 80,566,730 (+)NCBIGRCr8
mRatBN7.21080,064,489 - 80,069,891 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1080,064,489 - 80,069,872 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1085,012,728 - 85,018,082 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01084,510,795 - 84,516,153 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01079,904,811 - 79,910,196 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,937,971 - 82,943,367 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,937,971 - 82,943,348 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01082,748,717 - 82,754,113 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41083,802,169 - 83,807,565 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11083,816,537 - 83,821,901 (+)NCBI
Celera1078,837,978 - 78,843,374 (+)NCBICelera
Cytogenetic Map10q26NCBI
Dlx3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545111,635,025 - 11,640,094 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545111,635,027 - 11,640,091 (+)NCBIChiLan1.0ChiLan1.0
DLX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,018,101 - 26,022,964 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,017,689 - 26,022,736 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,411,246 - 25,416,061 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0926,812,590 - 26,817,409 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl926,812,181 - 26,817,445 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1925,580,439 - 25,585,227 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0925,839,568 - 25,844,414 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0925,969,011 - 25,973,822 (-)NCBIUU_Cfam_GSD_1.0
Dlx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,444,024 - 25,449,328 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,625,862 - 11,631,131 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,625,862 - 11,630,035 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DLX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,177,903 - 26,183,157 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,177,896 - 26,183,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21226,192,842 - 26,198,116 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DLX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11643,339,733 - 43,345,599 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1643,340,576 - 43,344,095 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607714,056,290 - 14,061,725 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dlx3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,015,523 - 6,018,684 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,014,044 - 6,018,819 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000004019   ⟹   ENSPPAP00000000883
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1748,950,474 - 48,955,848 (-)Ensembl
RefSeq Acc Id: XM_003817470   ⟹   XP_003817518
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21966,174,243 - 66,179,497 (-)NCBI
NHGRI_mPanPan11770,980,766 - 70,986,020 (-)NCBI
Mhudiblu_PPA_v01744,076,437 - 44,081,690 (-)NCBI
PanPan1.11748,950,467 - 48,955,848 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003817518 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABM54369 (Get FASTA)   NCBI Sequence Viewer  
  ABM54370 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000000883
  ENSPPAP00000000883.1
RefSeq Acc Id: XP_003817518   ⟸   XM_003817470
- UniProtKB: A0A2R8Z7N5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000000883   ⟸   ENSPPAT00000004019

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000003644 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000004019.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Distal-less_Homeobox_TF UniProtKB/TrEMBL
  Distal-less_N UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
  HTH_motif UniProtKB/TrEMBL
KEGG Report pps:100994512 UniProtKB/TrEMBL
NCBI Gene DLX3 ENTREZGENE
PANTHER HOMEOBOX PROTEIN UniProtKB/TrEMBL
  HOMEOBOX PROTEIN DLX-3 UniProtKB/TrEMBL
Pfam DLL_N UniProtKB/TrEMBL
  Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
  HTHREPRESSR UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A2R8Z7N5 ENTREZGENE, UniProtKB/TrEMBL
  A1YGE4_PANPA UniProtKB/TrEMBL
  A1YGE5_PANPA UniProtKB/TrEMBL