POU2F3 (POU class 2 homeobox 3) - Rat Genome Database

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Gene: POU2F3 (POU class 2 homeobox 3) Pan paniscus
Analyze
Symbol: POU2F3
Name: POU class 2 homeobox 3
RGD ID: 11979323
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN epidermis development (ortholog); keratinocyte differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN cytosol (inferred); nuclear body (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: POU domain, class 2, transcription factor 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29120,942,149 - 121,023,683 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111122,045,852 - 122,127,394 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011115,075,399 - 115,156,307 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111119,001,408 - 119,082,531 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11119,001,408 - 119,082,531 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
POU2F3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29120,942,149 - 121,023,683 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111122,045,852 - 122,127,394 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011115,075,399 - 115,156,307 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111119,001,408 - 119,082,531 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11119,001,408 - 119,082,531 (+)Ensemblpanpan1.1panPan2
POU2F3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811120,236,638 - 120,319,945 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11120,236,640 - 120,319,945 (+)EnsemblGRCh38hg38GRCh38
GRCh3711120,107,347 - 120,190,654 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611119,616,161 - 119,695,863 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411119,616,255 - 119,695,863NCBI
Celera11117,269,155 - 117,349,355 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11116,046,921 - 116,130,682 (+)NCBIHuRef
CHM1_111119,994,786 - 120,078,108 (+)NCBICHM1_1
T2T-CHM13v2.011120,259,430 - 120,342,742 (+)NCBIT2T-CHM13v2.0
Pou2f3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39943,035,222 - 43,117,052 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl943,035,234 - 43,121,666 (-)EnsemblGRCm39 Ensembl
GRCm38943,123,927 - 43,205,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl943,123,939 - 43,210,369 (-)EnsemblGRCm38mm10GRCm38
MGSCv37942,932,022 - 43,013,838 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36942,878,382 - 42,956,750 (-)NCBIMGSCv36mm8
Celera940,376,891 - 40,458,828 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map924.21NCBI
Pou2f3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8852,392,363 - 52,474,756 (-)NCBIGRCr8
mRatBN7.2843,495,408 - 43,577,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl843,495,527 - 43,577,795 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx848,993,613 - 49,075,642 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0847,272,296 - 47,354,315 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0845,139,913 - 45,221,936 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0847,412,063 - 47,495,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl847,410,220 - 47,494,982 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0845,882,653 - 45,963,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4846,125,421 - 46,208,205 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1846,134,365 - 46,153,258 (-)NCBI
Celera843,085,942 - 43,168,201 (-)NCBICelera
Cytogenetic Map8q22NCBI
Pou2f3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541221,260,993 - 21,342,584 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541221,261,389 - 21,339,602 (+)NCBIChiLan1.0ChiLan1.0
POU2F3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1513,693,686 - 13,761,295 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl513,688,959 - 13,761,847 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha513,740,696 - 13,816,327 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0513,632,045 - 13,707,270 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl513,632,917 - 13,707,369 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1513,769,442 - 13,844,872 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0513,673,451 - 13,748,849 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0513,712,877 - 13,788,059 (-)NCBIUU_Cfam_GSD_1.0
Pou2f3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947102,176,340 - 102,257,848 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365425,104,169 - 5,177,839 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365425,097,837 - 5,177,968 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POU2F3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl947,376,750 - 47,460,165 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1947,376,852 - 47,458,265 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2952,601,487 - 52,617,890 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POU2F3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11111,643,414 - 111,728,967 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604314,332,540 - 14,354,684 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pou2f3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478415,597,240 - 15,674,996 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478415,597,097 - 15,675,975 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003819985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000050513   ⟹   ENSPPAP00000027671
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11119,001,408 - 119,082,531 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000050521   ⟹   ENSPPAP00000027679
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11119,003,942 - 119,080,985 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000050523   ⟹   ENSPPAP00000027681
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11119,004,224 - 119,080,985 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000050527   ⟹   ENSPPAP00000027685
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11119,060,593 - 119,080,985 (+)Ensembl
RefSeq Acc Id: XM_003819985   ⟹   XP_003820033
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29120,942,149 - 121,023,683 (+)NCBI
NHGRI_mPanPan111122,045,852 - 122,127,394 (+)NCBI
Mhudiblu_PPA_v011115,075,399 - 115,156,307 (+)NCBI
PanPan1.111119,001,408 - 119,082,531 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003820033 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000027671
  ENSPPAP00000027671.1
  ENSPPAP00000027679.1
  ENSPPAP00000027681.1
  ENSPPAP00000027685.1
RefSeq Acc Id: XP_003820033   ⟸   XM_003819985
- UniProtKB: A0A2R9BHB5 (UniProtKB/TrEMBL),   A0A2R9BHC5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000027681   ⟸   ENSPPAT00000050523
Ensembl Acc Id: ENSPPAP00000027679   ⟸   ENSPPAT00000050521
Ensembl Acc Id: ENSPPAP00000027685   ⟸   ENSPPAT00000050527
Ensembl Acc Id: ENSPPAP00000027671   ⟸   ENSPPAT00000050513
Protein Domains
Homeobox   POU-specific


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036880 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050513.1 UniProtKB/TrEMBL
  ENSPPAT00000050521.1 UniProtKB/TrEMBL
  ENSPPAT00000050523.1 UniProtKB/TrEMBL
  ENSPPAT00000050527.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Lambda_DNA-bd_dom_sf UniProtKB/TrEMBL
  POU UniProtKB/TrEMBL
  POU_dom UniProtKB/TrEMBL
  POU_domain_TF UniProtKB/TrEMBL
  TF_octamer UniProtKB/TrEMBL
KEGG Report pps:100983554 UniProtKB/TrEMBL
NCBI Gene POU2F3 ENTREZGENE
PANTHER POU DOMAIN UniProtKB/TrEMBL
  POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 3 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
  Pou UniProtKB/TrEMBL
PRINTS OCTAMER UniProtKB/TrEMBL
  POUDOMAIN UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  POU_1 UniProtKB/TrEMBL
  POU_2 UniProtKB/TrEMBL
  POU_3 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
  POU UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
  SSF47413 UniProtKB/TrEMBL
UniProt A0A2R9BDI9_PANPA UniProtKB/TrEMBL
  A0A2R9BHB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BHC5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BM17_PANPA UniProtKB/TrEMBL