ZNF250 (zinc finger protein 250) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: ZNF250 (zinc finger protein 250) Pan paniscus
Analyze
Symbol: ZNF250
Name: zinc finger protein 250
RGD ID: 11975331
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH Recombinant Chromosome 8 Syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27162,349,677 - 162,410,141 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,919,997 - 137,941,088 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08141,628,421 - 141,683,924 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18144,643,023 - 144,663,226 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8144,643,662 - 144,652,461 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF250
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27162,349,677 - 162,410,141 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,919,997 - 137,941,088 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08141,628,421 - 141,683,924 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18144,643,023 - 144,663,226 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8144,643,662 - 144,652,461 (-)Ensemblpanpan1.1panPan2
ZNF250
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,876,955 - 144,902,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,876,497 - 144,902,168 (-)EnsemblGRCh38hg38GRCh38
GRCh378146,102,340 - 146,127,562 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368146,075,775 - 146,097,616 (-)NCBINCBI36Build 36hg18NCBI36
Build 348146,077,336 - 146,097,632NCBI
Celera8142,278,872 - 142,303,378 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8141,218,182 - 141,242,687 (-)NCBIHuRef
CHM1_18146,140,622 - 146,165,124 (-)NCBICHM1_1
T2T-CHM13v2.08146,050,748 - 146,075,971 (-)NCBIT2T-CHM13v2.0
Zfp647
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,794,570 - 76,809,907 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,794,571 - 76,809,648 (-)EnsemblGRCm39 Ensembl
GRCm381576,910,370 - 76,925,693 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,910,371 - 76,925,448 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,740,800 - 76,755,878 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,737,626 - 76,752,703 (-)NCBIMGSCv36mm8
Celera1578,405,400 - 78,420,478 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.28NCBI
Zfp647
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,512,866 - 110,527,680 (-)NCBIGRCr8
mRatBN7.27108,632,248 - 108,649,264 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,632,250 - 108,637,433 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07117,973,657 - 117,989,094 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7118,513,684 - 118,518,193 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,974,278 - 117,978,787 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07118,505,725 - 118,521,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,960,731 - 114,965,240 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,994,943 - 114,999,471 (-)NCBI
Celera7104,981,102 - 104,996,288 (-)NCBICelera
Cytogenetic Map7q34NCBI
ZNF250
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11338,130,240 - 38,149,509 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1338,131,000 - 38,145,563 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1338,090,962 - 38,111,064 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,604,057 - 38,624,155 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,604,065 - 38,624,651 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11338,295,497 - 38,315,582 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,404,364 - 38,424,443 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,879,711 - 38,899,832 (-)NCBIUU_Cfam_GSD_1.0
Znf250
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530386,659 - 107,102 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364707,517,581 - 7,532,933 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100621388
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl466,932 - 84,170 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl487,577 - 109,180 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1462,884 - 108,827 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,330 - 138,531 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF250
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18139,080,027 - 139,106,332 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8139,080,043 - 139,106,262 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666039734,705 - 761,290 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf250
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,047,092 - 12,060,276 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,040,515 - 12,060,959 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034966962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034966970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055116173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063606512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004673148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004673149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004673150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004673151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000052175   ⟹   ENSPPAP00000029326
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8144,643,662 - 144,652,461 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000052181   ⟹   ENSPPAP00000029332
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8144,643,981 - 144,652,461 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000052186   ⟹   ENSPPAP00000029337
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8144,647,585 - 144,652,461 (-)Ensembl
RefSeq Acc Id: XM_034966962   ⟹   XP_034822853
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,388,976 - 162,409,944 (-)NCBI
NHGRI_mPanPan18137,919,997 - 137,940,977 (-)NCBI
Mhudiblu_PPA_v08141,662,728 - 141,683,924 (-)NCBI
RefSeq Acc Id: XM_034966964   ⟹   XP_034822855
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,388,976 - 162,409,227 (-)NCBI
NHGRI_mPanPan18137,919,997 - 137,940,483 (-)NCBI
Mhudiblu_PPA_v08141,662,728 - 141,683,218 (-)NCBI
RefSeq Acc Id: XM_034966965   ⟹   XP_034822856
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,388,976 - 162,410,080 (-)NCBI
NHGRI_mPanPan18137,919,997 - 137,941,088 (-)NCBI
Mhudiblu_PPA_v08141,662,728 - 141,683,922 (-)NCBI
RefSeq Acc Id: XM_034966967   ⟹   XP_034822858
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,388,976 - 162,409,276 (-)NCBI
NHGRI_mPanPan18137,919,997 - 137,940,490 (-)NCBI
Mhudiblu_PPA_v08141,662,728 - 141,683,224 (-)NCBI
RefSeq Acc Id: XM_034966968   ⟹   XP_034822859
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,388,976 - 162,409,276 (-)NCBI
NHGRI_mPanPan18137,919,997 - 137,940,483 (-)NCBI
Mhudiblu_PPA_v08141,662,728 - 141,683,219 (-)NCBI
RefSeq Acc Id: XM_034966969   ⟹   XP_034822860
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,388,976 - 162,409,226 (-)NCBI
NHGRI_mPanPan18137,919,997 - 137,940,484 (-)NCBI
Mhudiblu_PPA_v08141,662,728 - 141,683,219 (-)NCBI
RefSeq Acc Id: XM_034966970   ⟹   XP_034822861
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,388,976 - 162,410,141 (-)NCBI
NHGRI_mPanPan18137,919,997 - 137,941,088 (-)NCBI
Mhudiblu_PPA_v08141,662,728 - 141,683,923 (-)NCBI
RefSeq Acc Id: XM_055116173   ⟹   XP_054972148
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,388,976 - 162,409,226 (-)NCBI
NHGRI_mPanPan18137,919,997 - 137,940,488 (-)NCBI
RefSeq Acc Id: XM_063606512   ⟹   XP_063462582
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,388,976 - 162,409,226 (-)NCBI
RefSeq Acc Id: XR_010112847
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,349,677 - 162,409,276 (-)NCBI
RefSeq Acc Id: XR_010112848
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,349,677 - 162,409,276 (-)NCBI
RefSeq Acc Id: XR_010112849
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,349,677 - 162,409,276 (-)NCBI
RefSeq Acc Id: XR_010112850
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,349,677 - 162,409,276 (-)NCBI
RefSeq Acc Id: XR_010112851
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,349,677 - 162,409,276 (-)NCBI
RefSeq Acc Id: XR_010112852
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,349,677 - 162,409,276 (-)NCBI
RefSeq Acc Id: XR_010112853
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,349,677 - 162,409,276 (-)NCBI
RefSeq Acc Id: XR_010112854
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,349,677 - 162,409,276 (-)NCBI
RefSeq Acc Id: XR_010112855
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,349,677 - 162,409,276 (-)NCBI
RefSeq Acc Id: XR_010112856
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27162,349,677 - 162,409,276 (-)NCBI
RefSeq Acc Id: XP_034822853   ⟸   XM_034966962
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034822861   ⟸   XM_034966970
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034822856   ⟸   XM_034966965
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034822858   ⟸   XM_034966967
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034822859   ⟸   XM_034966968
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034822860   ⟸   XM_034966969
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034822855   ⟸   XM_034966964
- Peptide Label: isoform X2
Ensembl Acc Id: ENSPPAP00000029326   ⟸   ENSPPAT00000052175
Ensembl Acc Id: ENSPPAP00000029337   ⟸   ENSPPAT00000052186
Ensembl Acc Id: ENSPPAP00000029332   ⟸   ENSPPAT00000052181
RefSeq Acc Id: XP_054972148   ⟸   XM_055116173
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063462582   ⟸   XM_063606512
- Peptide Label: isoform X3
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037648 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052175.1 UniProtKB/TrEMBL
  ENSPPAT00000052181.1 UniProtKB/TrEMBL
  ENSPPAT00000052186.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF250 ENTREZGENE
PANTHER GASTRULA ZINC FINGER PROTEIN XLCGF57.1-LIKE-RELATED UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 33A UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9BLQ2_PANPA UniProtKB/TrEMBL
  A0A2R9BLQ6_PANPA UniProtKB/TrEMBL
  A0A2R9BRW6_PANPA UniProtKB/TrEMBL