Znf250 (zinc finger protein 250) - Rat Genome Database

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Gene: Znf250 (zinc finger protein 250) Ictidomys tridecemlineatus
Analyze
Symbol: Znf250
Name: zinc finger protein 250
RGD ID: 12656193
Description: ENCODES a protein that exhibits identical protein binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530386,659 - 107,102 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364707,517,581 - 7,532,933 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Znf250
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530386,659 - 107,102 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364707,517,581 - 7,532,933 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF250
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388144,876,955 - 144,902,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8144,876,497 - 144,902,168 (-)EnsemblGRCh38hg38GRCh38
GRCh378146,102,340 - 146,127,562 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368146,075,775 - 146,097,616 (-)NCBINCBI36Build 36hg18NCBI36
Build 348146,077,336 - 146,097,632NCBI
Celera8142,278,872 - 142,303,378 (-)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8141,218,182 - 141,242,687 (-)NCBIHuRef
CHM1_18146,140,622 - 146,165,124 (-)NCBICHM1_1
T2T-CHM13v2.08146,050,748 - 146,075,971 (-)NCBIT2T-CHM13v2.0
Zfp647
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,794,570 - 76,809,907 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,794,571 - 76,809,648 (-)EnsemblGRCm39 Ensembl
GRCm381576,910,370 - 76,925,693 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1576,910,371 - 76,925,448 (-)EnsemblGRCm38mm10GRCm38
MGSCv371576,740,800 - 76,755,878 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361576,737,626 - 76,752,703 (-)NCBIMGSCv36mm8
Celera1578,405,400 - 78,420,478 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.28NCBI
Zfp647
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,512,866 - 110,527,680 (-)NCBIGRCr8
mRatBN7.27108,632,248 - 108,649,264 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,632,250 - 108,637,433 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07117,973,657 - 117,989,094 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7118,513,684 - 118,518,193 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,974,278 - 117,978,787 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07118,505,725 - 118,521,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,960,731 - 114,965,240 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17114,994,943 - 114,999,471 (-)NCBI
Celera7104,981,102 - 104,996,288 (-)NCBICelera
Cytogenetic Map7q34NCBI
ZNF250
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27162,349,677 - 162,410,141 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18137,919,997 - 137,941,088 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08141,628,421 - 141,683,924 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18144,643,023 - 144,663,226 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8144,643,662 - 144,652,461 (-)Ensemblpanpan1.1panPan2
ZNF250
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11338,130,240 - 38,149,509 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1338,131,000 - 38,145,563 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1338,090,962 - 38,111,064 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01338,604,057 - 38,624,155 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1338,604,065 - 38,624,651 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11338,295,497 - 38,315,582 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01338,404,364 - 38,424,443 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01338,879,711 - 38,899,832 (-)NCBIUU_Cfam_GSD_1.0
LOC100621388
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl466,932 - 84,170 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl487,577 - 109,180 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1462,884 - 108,827 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,330 - 138,531 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF250
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18139,080,027 - 139,106,332 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8139,080,043 - 139,106,262 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666039734,705 - 761,290 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf250
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473512,047,092 - 12,060,276 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473512,040,515 - 12,060,959 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013356773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013356773   ⟹   XP_013212227
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530386,659 - 107,102 (+)NCBI
SpeTri2.0NW_0049364707,517,581 - 7,532,933 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013212227 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013212227   ⟸   XM_013356773
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Znf250 ENTREZGENE