WDR72 (WD repeat domain 72) - Rat Genome Database

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Gene: WDR72 (WD repeat domain 72) Pan paniscus
Analyze
Symbol: WDR72
Name: WD repeat domain 72
RGD ID: 11970046
Description: INVOLVED IN ameloblast differentiation (ortholog); amelogenesis (ortholog); enamel mineralization (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta hypomaturation type 2A3 (ortholog); amelogenesis imperfecta type 1C (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 72
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21642,744,167 - 42,991,318 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11546,926,063 - 47,171,939 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01532,449,840 - 32,695,815 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11550,775,112 - 51,020,827 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1550,775,112 - 51,023,853 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WDR72
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21642,744,167 - 42,991,318 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11546,926,063 - 47,171,939 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01532,449,840 - 32,695,815 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11550,775,112 - 51,020,827 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1550,775,112 - 51,023,853 (-)Ensemblpanpan1.1panPan2
WDR72
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381553,513,741 - 53,762,878 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1553,513,741 - 53,762,878 (-)EnsemblGRCh38hg38GRCh38
GRCh371553,805,938 - 54,055,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361551,593,230 - 51,839,151 (-)NCBINCBI36Build 36hg18NCBI36
Celera1530,700,883 - 30,946,788 (-)NCBICelera
Cytogenetic Map15q21.3NCBI
HuRef1530,636,351 - 30,885,547 (-)NCBIHuRef
CHM1_11553,924,850 - 54,173,945 (-)NCBICHM1_1
T2T-CHM13v2.01551,323,311 - 51,572,387 (-)NCBIT2T-CHM13v2.0
Wdr72
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39974,017,608 - 74,190,485 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl974,017,638 - 74,190,590 (+)EnsemblGRCm39 Ensembl
GRCm38974,110,331 - 74,283,203 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl974,110,356 - 74,283,308 (+)EnsemblGRCm38mm10GRCm38
MGSCv37973,958,141 - 74,131,010 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36973,907,488 - 73,940,010 (+)NCBIMGSCv36mm8
Celera971,281,363 - 71,459,615 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map941.06NCBI
Wdr72
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8883,718,897 - 83,902,128 (+)NCBIGRCr8
mRatBN7.2874,838,338 - 75,020,938 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl874,838,318 - 75,018,229 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx880,376,542 - 80,534,949 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0878,646,922 - 78,805,352 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0876,483,953 - 76,642,306 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0880,965,734 - 81,125,710 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl880,965,255 - 81,039,246 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0880,586,841 - 80,744,090 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4878,891,358 - 79,050,751 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera874,673,385 - 74,831,075 (+)NCBICelera
Cytogenetic Map8q24NCBI
Wdr72
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554091,467,732 - 1,674,042 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554091,451,506 - 1,631,976 (+)NCBIChiLan1.0ChiLan1.0
WDR72
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13019,120,021 - 19,340,781 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3019,122,674 - 19,326,874 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3019,047,863 - 19,268,595 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03019,262,624 - 19,483,637 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3019,264,515 - 19,483,641 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13019,192,964 - 19,413,822 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03019,306,628 - 19,527,417 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03019,410,651 - 19,631,543 (-)NCBIUU_Cfam_GSD_1.0
Wdr72
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864097,385,709 - 97,568,361 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647115,233,840 - 15,416,415 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647115,233,828 - 15,416,415 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR72
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1117,946,048 - 118,160,286 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11117,946,022 - 118,161,827 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21130,651,290 - 130,866,858 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR72
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12629,670,775 - 29,909,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2629,699,645 - 29,904,754 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048111,338,115 - 111,571,856 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr72
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247317,205,335 - 7,367,112 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247317,186,570 - 7,365,900 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000064421   ⟹   ENSPPAP00000041495
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1550,775,112 - 50,994,397 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000064422   ⟹   ENSPPAP00000041496
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1550,779,042 - 50,802,404 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000064424   ⟹   ENSPPAP00000041498
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1550,784,348 - 51,023,853 (-)Ensembl
RefSeq Acc Id: XM_003827853   ⟹   XP_003827901
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21642,744,167 - 42,963,602 (-)NCBI
NHGRI_mPanPan11546,926,063 - 47,145,434 (-)NCBI
Mhudiblu_PPA_v01532,449,840 - 32,695,815 (-)NCBI
PanPan1.11550,775,112 - 51,020,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008953180   ⟹   XP_008951428
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21642,745,592 - 42,991,318 (-)NCBI
NHGRI_mPanPan11546,927,470 - 47,171,939 (-)NCBI
Mhudiblu_PPA_v01532,451,234 - 32,695,815 (-)NCBI
PanPan1.11550,777,526 - 51,020,827 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003827901 (Get FASTA)   NCBI Sequence Viewer  
  XP_008951428 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000041495.1
  ENSPPAP00000041496.1
  ENSPPAP00000041498.1
RefSeq Acc Id: XP_003827901   ⟸   XM_003827853
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CHR2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008951428   ⟸   XM_008953180
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CHR2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000041498   ⟸   ENSPPAT00000064424
Ensembl Acc Id: ENSPPAP00000041495   ⟸   ENSPPAT00000064421
Ensembl Acc Id: ENSPPAP00000041496   ⟸   ENSPPAT00000064422


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043364 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000064421.1 UniProtKB/TrEMBL
  ENSPPAT00000064422.1 UniProtKB/TrEMBL
  ENSPPAT00000064424.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR7/72 UniProtKB/TrEMBL
KEGG Report pps:100993072 UniProtKB/TrEMBL
NCBI Gene WDR72 ENTREZGENE
PANTHER RABCONNECTIN-3B, ISOFORM A UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 72 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A2R9CHR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CHR3_PANPA UniProtKB/TrEMBL
  A0A2R9CKH0_PANPA UniProtKB/TrEMBL