GLRA4 (glycine receptor alpha 4) - Rat Genome Database

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Gene: GLRA4 (glycine receptor alpha 4) Pan paniscus
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Symbol: GLRA4
Name: glycine receptor alpha 4 (Ensembl:glycine receptor alpha 4 (pseudogene))
RGD ID: 11945250
Description: ENCODES a protein that exhibits chloride channel activity (inferred); extracellularly glycine-gated chloride channel activity (inferred); glycine binding (inferred); INVOLVED IN chloride transmembrane transport (inferred); chloride transport (inferred); excitatory postsynaptic potential (inferred); FOUND IN glycinergic synapse (ortholog); postsynaptic specialization membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycine receptor alpha 4 (pseudogene); glycine receptor subunit alpha-4; LOC100996103
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X103,317,432 - 103,340,251 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X103,319,883 - 103,343,856 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X92,933,694 - 92,957,714 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X103,316,810 - 103,338,910 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX103,317,486 - 103,338,910 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GLRA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X103,317,432 - 103,340,251 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X103,319,883 - 103,343,856 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X92,933,694 - 92,957,714 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X103,316,810 - 103,338,910 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX103,317,486 - 103,338,910 (-)Ensemblpanpan1.1panPan2
GLRA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X103,705,494 - 103,728,495 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX103,707,224 - 103,728,203 (-)EnsemblGRCh38hg38GRCh38
GRCh37X102,960,422 - 102,983,423 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X102,848,928 - 102,866,560 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX103,401,274 - 103,422,554 (-)NCBICelera
Cytogenetic MapXq22.2NCBI
HuRefX92,619,349 - 92,640,430 (-)NCBIHuRef
CHM1_1X102,855,289 - 102,876,568 (-)NCBICHM1_1
T2T-CHM13v2.0X102,152,460 - 102,175,469 (-)NCBIT2T-CHM13v2.0
Glra4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X135,655,107 - 135,680,935 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX135,658,423 - 135,680,890 (-)EnsemblGRCm39 Ensembl
GRCm38X136,754,515 - 136,780,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX136,757,674 - 136,780,141 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X133,292,213 - 133,314,260 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X132,104,060 - 132,122,275 (-)NCBIMGSCv36mm8
CeleraX120,041,251 - 120,061,763 (-)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX59.1NCBI
Glra4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X104,899,449 - 104,923,328 (-)NCBIGRCr8
mRatBN7.2X100,110,517 - 100,131,042 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX100,110,517 - 100,131,042 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX102,240,701 - 102,261,223 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X105,739,380 - 105,759,902 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X103,308,550 - 103,329,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X107,416,019 - 107,447,253 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX107,422,357 - 107,442,878 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X107,306,116 - 107,326,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X124,410,009 - 124,430,532 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX100,945,585 - 100,966,108 (-)NCBICelera
Cytogenetic MapXq32NCBI
Glra4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955548712,257 - 736,327 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955548712,257 - 736,279 (-)NCBIChiLan1.0ChiLan1.0
GLRA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X77,115,962 - 77,142,381 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX77,119,072 - 77,194,726 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX63,345,343 - 63,371,619 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X78,735,140 - 78,761,415 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX78,737,813 - 78,761,133 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X76,212,496 - 76,238,770 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X77,899,243 - 77,925,515 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X77,666,343 - 77,692,622 (-)NCBIUU_Cfam_GSD_1.0
LOC101969868
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X77,035,389 - 77,060,252 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493649910,597,673 - 10,622,868 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLRA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX84,584,907 - 84,612,860 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X84,584,907 - 84,612,860 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X98,373,709 - 98,401,678 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103232415
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X91,593,838 - 91,619,885 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX91,597,324 - 91,618,542 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606516,461,522 - 16,483,355 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glra4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624954205,888 - 229,894 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000057522   ⟹   ENSPPAP00000034639
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX103,317,486 - 103,338,490 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000057532   ⟹   ENSPPAP00000034649
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX103,323,813 - 103,338,910 (-)Ensembl
RefSeq Acc Id: XM_008973051   ⟹   XP_008971299
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X103,317,432 - 103,340,251 (-)NCBI
NHGRI_mPanPan1X103,319,883 - 103,343,856 (-)NCBI
Mhudiblu_PPA_v0X92,933,694 - 92,957,714 (-)NCBI
PanPan1.1X103,316,810 - 103,338,910 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008971299 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000034639
  ENSPPAP00000034639.1
  ENSPPAP00000034649.1
RefSeq Acc Id: XP_008971299   ⟸   XM_008973051
- UniProtKB: A0A2R9C893 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000034639   ⟸   ENSPPAT00000057522
Ensembl Acc Id: ENSPPAP00000034649   ⟸   ENSPPAT00000057532

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040159 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057522.1 UniProtKB/TrEMBL
  ENSPPAT00000057532.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro GABAA/Glycine_rcpt UniProtKB/TrEMBL
  Glycine_rcpt_A UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
NCBI Gene GLRA4 ENTREZGENE
PANTHER GLYCINE RECEPTOR SUBUNIT ALPHA-4 UniProtKB/TrEMBL
  PTHR18945 UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PRINTS GABAARECEPTR UniProtKB/TrEMBL
  GLYRALPHA UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/TrEMBL
  SSF90112 UniProtKB/TrEMBL
UniProt A0A2R9C893 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C8A2_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-04 GLRA4  glycine receptor alpha 4  LOC100996103  glycine receptor alpha 4 (pseudogene)  Symbol and/or name change 5135510 APPROVED
2020-07-01 LOC100996103  glycine receptor alpha 4 (pseudogene)  GLRA4  glycine receptor alpha 4 (pseudogene)  Symbol and/or name change 5135510 APPROVED
2019-11-05 GLRA4  glycine receptor alpha 4 (pseudogene)  GLRA4  glycine receptor alpha 4  Symbol and/or name change 5135510 APPROVED