CTDSPL2 (CTD small phosphatase like 2) - Rat Genome Database

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Gene: CTDSPL2 (CTD small phosphatase like 2) Pan paniscus
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Symbol: CTDSPL2
Name: CTD small phosphatase like 2
RGD ID: 11927090
Description: ENCODES a protein that exhibits phosphatase activity (inferred); phosphoprotein phosphatase activity (inferred); protein serine/threonine phosphatase activity (inferred); INVOLVED IN negative regulation of BMP signaling pathway (ortholog); positive regulation of protein export from nucleus (ortholog); protein dephosphorylation (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CTD small phosphatase-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,674,389 - 33,774,598 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,837,417 - 37,940,172 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01523,384,416 - 23,483,508 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11541,554,276 - 41,654,736 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1541,554,276 - 41,654,736 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CTDSPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,674,389 - 33,774,598 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,837,417 - 37,940,172 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01523,384,416 - 23,483,508 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11541,554,276 - 41,654,736 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1541,554,276 - 41,654,736 (+)Ensemblpanpan1.1panPan2
CTDSPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381544,427,629 - 44,529,038 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1544,427,622 - 44,529,038 (+)EnsemblGRCh38hg38GRCh38
GRCh371544,719,827 - 44,821,236 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361542,506,871 - 42,606,722 (+)NCBINCBI36Build 36hg18NCBI36
Celera1521,609,344 - 21,709,186 (+)NCBICelera
Cytogenetic Map15q15.3-q21.1NCBI
HuRef1521,542,511 - 21,642,657 (+)NCBIHuRef
CHM1_11544,837,772 - 44,937,540 (+)NCBICHM1_1
T2T-CHM13v2.01542,234,989 - 42,336,704 (+)NCBIT2T-CHM13v2.0
Ctdspl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,785,879 - 121,845,807 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,786,482 - 121,844,123 (+)EnsemblGRCm39 Ensembl
GRCm382121,955,398 - 122,015,326 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,956,001 - 122,013,642 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,782,189 - 121,839,322 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,647,894 - 121,705,027 (+)NCBIMGSCv36mm8
Celera2123,105,063 - 123,161,640 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.46NCBI
Ctdspl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83129,365,709 - 129,424,232 (+)NCBIGRCr8
mRatBN7.23108,915,263 - 108,970,620 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,915,280 - 108,967,227 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3112,589,499 - 112,641,835 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03121,185,039 - 121,237,372 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03118,845,411 - 118,897,746 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03113,906,803 - 113,957,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,918,629 - 113,960,101 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03120,445,979 - 120,498,692 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,742,714 - 108,796,435 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13108,648,286 - 108,702,007 (+)NCBI
Celera3107,814,236 - 107,864,724 (+)NCBICelera
Cytogenetic Map3q35NCBI
Ctdspl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,970,492 - 11,046,179 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,970,487 - 11,046,179 (+)NCBIChiLan1.0ChiLan1.0
CTDSPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13011,109,571 - 11,194,985 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3011,109,664 - 11,193,534 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3011,166,102 - 11,254,634 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03011,245,681 - 11,334,277 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3011,245,772 - 11,334,259 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13011,152,895 - 11,241,371 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03011,276,652 - 11,363,904 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03011,395,449 - 11,483,617 (+)NCBIUU_Cfam_GSD_1.0
Ctdspl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,577,496 - 89,657,911 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364717,425,590 - 7,503,980 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364717,425,543 - 7,502,299 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTDSPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,028,887 - 127,125,392 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,029,445 - 127,125,747 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21141,621,919 - 141,627,665 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CTDSPL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12638,516,044 - 38,626,963 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2638,519,094 - 38,627,099 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048102,416,240 - 102,525,619 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctdspl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480411,703,529 - 11,781,542 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000056840   ⟹   ENSPPAP00000033959
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1541,554,276 - 41,654,736 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000056843   ⟹   ENSPPAP00000033962
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1541,585,264 - 41,649,868 (+)Ensembl
RefSeq Acc Id: XM_003811378   ⟹   XP_003811426
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21633,674,389 - 33,774,598 (+)NCBI
NHGRI_mPanPan11537,837,417 - 37,937,307 (+)NCBI
Mhudiblu_PPA_v01523,384,608 - 23,483,508 (+)NCBI
PanPan1.11541,554,276 - 41,654,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008963796   ⟹   XP_008962044
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21633,674,389 - 33,774,598 (+)NCBI
NHGRI_mPanPan11537,837,417 - 37,940,172 (+)NCBI
Mhudiblu_PPA_v01523,384,418 - 23,483,508 (+)NCBI
PanPan1.11541,554,281 - 41,654,736 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055098377   ⟹   XP_054954352
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21633,674,389 - 33,774,598 (+)NCBI
NHGRI_mPanPan11537,837,417 - 37,940,172 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003811426 (Get FASTA)   NCBI Sequence Viewer  
  XP_008962044 (Get FASTA)   NCBI Sequence Viewer  
  XP_054954352 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033959
  ENSPPAP00000033959.1
  ENSPPAP00000033962.1
RefSeq Acc Id: XP_003811426   ⟸   XM_003811378
- UniProtKB: A0A2R9C5Y3 (UniProtKB/TrEMBL),   A0A2R9BWA0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008962044   ⟸   XM_008963796
- UniProtKB: A0A2R9C5Y3 (UniProtKB/TrEMBL),   A0A2R9BWA0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000033962   ⟸   ENSPPAT00000056843
Ensembl Acc Id: ENSPPAP00000033959   ⟸   ENSPPAT00000056840
RefSeq Acc Id: XP_054954352   ⟸   XM_055098377
- UniProtKB: A0A2R9C5Y3 (UniProtKB/TrEMBL)
Protein Domains
FCP1 homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039837 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056840.1 UniProtKB/TrEMBL
  ENSPPAT00000056843.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
InterPro Dullard_phosphatase UniProtKB/TrEMBL
  FCP1_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  TIM50 UniProtKB/TrEMBL
KEGG Report pps:100982368 UniProtKB/TrEMBL
NCBI Gene CTDSPL2 ENTREZGENE
PANTHER CTD SMALL PHOSPHATASE-LIKE PROTEIN 2 UniProtKB/TrEMBL
  DULLARD PROTEIN PHOSPHATASE UniProtKB/TrEMBL
Pfam NIF UniProtKB/TrEMBL
PROSITE FCP1 UniProtKB/TrEMBL
SMART CPDc UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
UniProt A0A2R9BWA0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C5Y3 ENTREZGENE, UniProtKB/TrEMBL