FMC1 (formation of mitochondrial complex V assembly factor 1 homolog) - Rat Genome Database

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Gene: FMC1 (formation of mitochondrial complex V assembly factor 1 homolog) Pan paniscus
Analyze
Symbol: FMC1
Name: formation of mitochondrial complex V assembly factor 1 homolog
RGD ID: 11921267
Description: INVOLVED IN apoptotic mitochondrial changes (ortholog); dopaminergic neuron differentiation (ortholog); mitochondrial proton-transporting ATP synthase complex assembly (ortholog); ASSOCIATED WITH Parkinson's Disease, Mitochondrial (ortholog); pleomorphic xanthoastrocytoma (ortholog); RASopathy (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UPF0562 protein C7orf55 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26176,143,873 - 176,149,116 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1728,153,686 - 28,161,435 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07131,289,119 - 131,295,330 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17143,773,794 - 143,778,431 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FMC1Bonobopleomorphic xanthoastrocytoma  ISORGD:16069508554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
FMC1BonoboRASopathy  ISORGD:16069508554872ClinVar Annotator: match by term: RASopathyClinVarPMID:12414817|PMID:16611712|PMID:28492532
FMC1BonoboUsher syndrome  ISORGD:16069508554872ClinVar Annotator: match by term: Usher syndromeClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FMC1BonoboParkinson's Disease, Mitochondrial  ISORGD:16069509068941CTD Direct Evidence: marker/mechanismCTDPMID:29371327
FMC1Bonobosecondary Parkinson disease  ISORGD:16069509068941CTD Direct Evidence: marker/mechanismCTDPMID:29371327


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FMC1Bonoboapoptotic mitochondrial changes acts_upstream_of_or_withinISORGD:13217949068941 PMID:38693257MGIPMID:38693257
FMC1Bonobodopaminergic neuron differentiation acts_upstream_of_or_withinISORGD:13217949068941 PMID:38693257MGIPMID:38693257
FMC1Bonobomitochondrial proton-transporting ATP synthase complex assembly involved_inISORGD:16069509068941 PMID:28719601UniProtPMID:28719601
FMC1Bonobomitochondrion organization acts_upstream_of_or_withinISORGD:13217949068941 PMID:38693257MGIPMID:38693257
FMC1Bonobomotor behavior acts_upstream_of_or_withinISORGD:13217949068941 PMID:38693257MGIPMID:38693257
FMC1Bonobonegative regulation of lipid catabolic process acts_upstream_of_or_withinISORGD:13217949068941 PMID:25912136MGIPMID:25912136
FMC1Bonoboregulation of type B pancreatic cell proliferation acts_upstream_of_or_withinISORGD:13217949068941 PMID:25912136MGIPMID:25912136
FMC1Bonoboresponse to toxic substance acts_upstream_of_or_withinISORGD:13217949068941 PMID:38693257MGIPMID:38693257

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FMC1Bonobomitochondrion located_inISORGD:16069509068941 PMID:28719601UniProtPMID:28719601
FMC1Bonobomitochondrion located_inISORGD:16069509068941 PMID:34800366FlyBasePMID:34800366

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FMC1Bonoboprotein binding enablesISOUniProtKB:Q8N5M19068941 PMID:28719601UniProtPMID:28719601

PMID:30032202  



FMC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26176,143,873 - 176,149,116 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1728,153,686 - 28,161,435 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07131,289,119 - 131,295,330 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17143,773,794 - 143,778,431 (+)NCBIpanpan1.1PanPan1.1panPan2
FMC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387139,340,472 - 139,346,328 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7139,339,457 - 139,346,328 (+)EnsemblGRCh38hg38GRCh38
GRCh377139,025,218 - 139,031,074 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367138,676,615 - 138,681,605 (+)NCBINCBI36Build 36hg18NCBI36
Celera7133,764,065 - 133,768,709 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7133,335,079 - 133,340,948 (+)NCBIHuRef
CHM1_17138,958,933 - 138,964,811 (+)NCBICHM1_1
T2T-CHM13v2.07140,653,753 - 140,659,609 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27138,369,767 - 138,375,635 (+)NCBI
Fmc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,511,796 - 38,516,384 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,510,437 - 38,516,384 (+)EnsemblGRCm39 Ensembl
GRCm38638,534,861 - 38,539,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,533,502 - 38,539,449 (+)EnsemblGRCm38mm10GRCm38
MGSCv37638,484,861 - 38,489,449 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36638,464,469 - 38,469,057 (+)NCBIMGSCv36mm8
Celera638,515,810 - 38,520,398 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map617.84NCBI
Fmc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8468,241,009 - 68,249,045 (+)NCBIGRCr8
mRatBN7.2467,274,104 - 67,282,140 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl467,274,104 - 67,282,140 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx472,215,566 - 72,223,586 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0468,136,667 - 68,144,687 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0466,534,515 - 66,542,606 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0466,276,835 - 66,284,868 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl466,276,835 - 66,284,868 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0466,088,284 - 66,096,317 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4466,107,930 - 66,115,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera462,291,732 - 62,299,820 (+)NCBICelera
Cytogenetic Map4q23NCBI
Fmc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554943,722,519 - 3,728,622 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554943,722,359 - 3,730,217 (-)NCBIChiLan1.0ChiLan1.0
FMC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,413,358 - 9,418,791 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl169,413,359 - 9,418,791 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1610,255,427 - 10,260,859 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,332,934 - 9,338,367 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,328,706 - 9,337,749 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1169,283,433 - 9,288,867 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,127,378 - 9,132,811 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,198,532 - 9,203,965 (-)NCBIUU_Cfam_GSD_1.0
FMC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1810,346,032 - 10,350,339 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11810,346,029 - 10,350,372 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21810,742,530 - 10,746,881 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FMC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121108,087,824 - 108,092,337 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21108,087,781 - 108,092,384 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660724,913,729 - 4,918,730 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fmc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476519,768,212 - 19,771,138 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476519,767,361 - 19,784,527 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Acc Id: XM_008965971   ⟹   XP_008964219
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26176,143,876 - 176,148,585 (+)NCBI
NHGRI_mPanPan1728,153,687 - 28,158,839 (+)NCBI
Mhudiblu_PPA_v07131,289,119 - 131,293,721 (+)NCBI
PanPan1.17143,773,794 - 143,778,431 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034965081   ⟹   XP_034820972
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26176,143,874 - 176,149,116 (+)NCBI
NHGRI_mPanPan1728,153,686 - 28,161,433 (+)NCBI
Mhudiblu_PPA_v07131,289,119 - 131,295,330 (+)NCBI
RefSeq Acc Id: XM_034965082   ⟹   XP_034820973
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26176,143,873 - 176,149,116 (+)NCBI
NHGRI_mPanPan1728,153,686 - 28,161,435 (+)NCBI
Mhudiblu_PPA_v07131,289,119 - 131,295,330 (+)NCBI
Protein RefSeqs XP_008964219 (Get FASTA)   NCBI Sequence Viewer  
  XP_034820972 (Get FASTA)   NCBI Sequence Viewer  
  XP_034820973 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_008964219   ⟸   XM_008965971
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034820972   ⟸   XM_034965081
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034820973   ⟸   XM_034965082
- Peptide Label: isoform X3



Database
Acc Id
Source(s)
NCBI Gene FMC1 ENTREZGENE